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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053358 ID=TCONS_00053358|Name=TCONS_00053358|organism=Clytia hemisphaerica|type=transcript|length=844bp
ATGGATTGTGTACCAATCCTCACGGATGATCAGCGCAAAGCTATCGTTAG
CTTATATTTGACCATCGCTGTTTTGGGTACCGTCTTAAATGTGCTTTCAT
TACATTGCCAATGGAAAACGCGTCGAACCCGTGAATTCAATAATTCTGCT
CAGTTGATGGCAAGTTTAAGCGTATGTGATTTTATCAATTGCATATTTGT
CGTGCCCGTCTTTTGTGCTGGATACCACTGGAACGTACATTTGGACTGCG
CCGCTCTTAAAGCACAGGCTGTCTTCAACAATTGGAATGCGCTTTATTCA
TCTTGTCTTATTTTGATGATTACTTTCAATCGGTACTTGAAAATTGCCAA
GTATGCAAGATATGATCGTATAATGTCACGCAGACGTAATCTAATCATTA
ACGTGGCAGCAATTTCGACGTCGTTGTTTATCTCCTTAATAGCGGTAGTG
AATGTGAATTCAATGCTTCTGGTAACCACCGTATTAGTTGTTTTTACCGT
ATTCTCAATACCAACCCTCTATGCTCTCCTCTACAAAAGTATGCGGGCTA
ACCAGCAAGTGACACCAGCCTGTCAGCGCCGTCTTCGTAACAACAAAGTG
CTCAAGAATTTGCTCCTTTTGACCACTTGTTATTTGATTTGTAACCTCCC
AGTAATGTGCCTTGTTATGTATGCTTTGATCTCCAAGAAAAAGATGATTT
ACTTCGAAGCAAGAGTTACGCACGCTATCGTGTGTTTATCCTCTGTGTTA
AACCCTGTCATTTATGTTTTGAGAGATCCAGTTTACCGTCGAACTCTCTC
CACTTTGTTGCATTTAAATCGTGTTGTGGCTCAGCGACCATAGC Run BLAST on NCBI protein sequence of TCONS_00053358-protein >TCONS_00053358-protein ID=TCONS_00053358-protein|Name=TCONS_00053358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MDCVPILTDDQRKAIVSLYLTIAVLGTVLNVLSLHCQWKTRRTREFNNSA
QLMASLSVCDFINCIFVVPVFCAGYHWNVHLDCAALKAQAVFNNWNALYS
SCLILMITFNRYLKIAKYARYDRIMSRRRNLIINVAAISTSLFISLIAVV
NVNSMLLVTTVLVVFTVFSIPTLYALLYKSMRANQQVTPACQRRLRNNKV
LKNLLLLTTCYLICNLPVMCLVMYALISKKKMIYFEARVTHAIVCLSSVL
NPVIYVLRDPVYRRTLSTLLHLNRVVAQRP Run BLAST on NCBI transcript from alignment at scaffold_228:151868..152711 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053358 ID=TCONS_00053358|Name=TCONS_00053358|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_228:151868..152711 (Clytia hemisphaerica)
GCTATGGTCGCTGAGCCACAACACGATTTAAATGCAACAAAGTGGAGAGA
GTTCGACGGTAAACTGGATCTCTCAAAACATAAATGACAGGGTTTAACAC
AGAGGATAAACACACGATAGCGTGCGTAACTCTTGCTTCGAAGTAAATCA
TCTTTTTCTTGGAGATCAAAGCATACATAACAAGGCACATTACTGGGAGG
TTACAAATCAAATAACAAGTGGTCAAAAGGAGCAAATTCTTGAGCACTTT
GTTGTTACGAAGACGGCGCTGACAGGCTGGTGTCACTTGCTGGTTAGCCC
GCATACTTTTGTAGAGGAGAGCATAGAGGGTTGGTATTGAGAATACGGTA
AAAACAACTAATACGGTGGTTACCAGAAGCATTGAATTCACATTCACTAC
CGCTATTAAGGAGATAAACAACGACGTCGAAATTGCTGCCACGTTAATGA
TTAGATTACGTCTGCGTGACATTATACGATCATATCTTGCATACTTGGCA
ATTTTCAAGTACCGATTGAAAGTAATCATCAAAATAAGACAAGATGAATA
AAGCGCATTCCAATTGTTGAAGACAGCCTGTGCTTTAAGAGCGGCGCAGT
CCAAATGTACGTTCCAGTGGTATCCAGCACAAAAGACGGGCACGACAAAT
ATGCAATTGATAAAATCACATACGCTTAAACTTGCCATCAACTGAGCAGA
ATTATTGAATTCACGGGTTCGACGCGTTTTCCATTGGCAATGTAATGAAA
GCACATTTAAGACGGTACCCAAAACAGCGATGGTCAAATATAAGCTAACG
ATAGCTTTGCGCTGATCATCCGTGAGGATTGGTACACAATCCAT Coding sequence (CDS) from alignment at scaffold_228:151868..152711 >TCONS_00053358 ID=TCONS_00053358|Name=TCONS_00053358|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_228:151868..152711 (Clytia hemisphaerica)
CTATGGTCGCTGAGCCACAACACGATTTAAATGCAACAAAGTGGAGAGAG
TTCGACGGTAAACTGGATCTCTCAAAACATAAATGACAGGGTTTAACACA
GAGGATAAACACACGATAGCGTGCGTAACTCTTGCTTCGAAGTAAATCAT
CTTTTTCTTGGAGATCAAAGCATACATAACAAGGCACATTACTGGGAGGT
TACAAATCAAATAACAAGTGGTCAAAAGGAGCAAATTCTTGAGCACTTTG
TTGTTACGAAGACGGCGCTGACAGGCTGGTGTCACTTGCTGGTTAGCCCG
CATACTTTTGTAGAGGAGAGCATAGAGGGTTGGTATTGAGAATACGGTAA
AAACAACTAATACGGTGGTTACCAGAAGCATTGAATTCACATTCACTACC
GCTATTAAGGAGATAAACAACGACGTCGAAATTGCTGCCACGTTAATGAT
TAGATTACGTCTGCGTGACATTATACGATCATATCTTGCATACTTGGCAA
TTTTCAAGTACCGATTGAAAGTAATCATCAAAATAAGACAAGATGAATAA
AGCGCATTCCAATTGTTGAAGACAGCCTGTGCTTTAAGAGCGGCGCAGTC
CAAATGTACGTTCCAGTGGTATCCAGCACAAAAGACGGGCACGACAAATA
TGCAATTGATAAAATCACATACGCTTAAACTTGCCATCAACTGAGCAGAA
TTATTGAATTCACGGGTTCGACGCGTTTTCCATTGGCAATGTAATGAAAG
CACATTTAAGACGGTACCCAAAACAGCGATGGTCAAATATAAGCTAACGA
TAGCTTTGCGCTGATCATCCGTGAGGATTGGTACACAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053358-exon-scaffold_228-1491911889:151868..152711 | TCONS_00053358-exon-scaffold_228-1491911889:151868..152711 | Clytia hemisphaerica | exon |
| TCONS_00053358-exon-scaffold_228-1510915933:151868..152711 | TCONS_00053358-exon-scaffold_228-1510915933:151868..152711 | Clytia hemisphaerica | exon |
| TCONS_00053358-exon-scaffold_228-1575043694:151868..152711 | TCONS_00053358-exon-scaffold_228-1575043694:151868..152711 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:151868..152711 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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