TCONS_00053112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053112
Unique NameTCONS_00053112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053112 ID=TCONS_00053112|Name=TCONS_00053112|organism=Clytia hemisphaerica|type=transcript|length=553bp
CAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGGGCT
TCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGacATAATTTTCATCA
CCTGTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAACCAA
ATTATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTATGG
AGTAGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAATGG
AGGCGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTCACA
TGAacTTTATTGTTGAGCATTGTTCATTGATGGAAAAGATGGTGTTAAAA
GCAGACCTGGTATCATGGAACAAAGAGTATAATTTTAGtttaaaaatcta
aagaatTGACATGACAATGTAAGAAGAATACATTATtgcaatgttttcat
ttttaatggtttttacTGGTTGAGTGTGTGTCACGCAGGTACTCTTGGGT
TCCTAATAAACGAGGGGtcggaaaatatttcaaaaattaataaacgggca
GAC
Run BLAST on NCBI

protein sequence of TCONS_00053112-protein

>TCONS_00053112-protein ID=TCONS_00053112-protein|Name=TCONS_00053112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
QSELINLKWRHEIAPGLHHRASKLTRFSDIIFITCLSIIQLSISYQIVNQ
IIMLVQKKWWVLTLHYGVDVVVYNDLRLGNHKMEARFIIRCFQQNPEHFT
Run BLAST on NCBI

transcript from alignment at scaffold_226:192758..196220+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053112 ID=TCONS_00053112|Name=TCONS_00053112|organism=Clytia hemisphaerica|type=transcript|length=3463bp|location=Sequence derived from alignment at scaffold_226:192758..196220+ (Clytia hemisphaerica)
CAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGGGCT TCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGGTAAATCTTCTGTCA GCAGTGCTAATATTATCATAAACGAAAGGTTAAATAATCGGACTACTGTT ATGGCAAGTTTTGAATTACCGTTCTCTTCGATGCAACAGATTAAAACCTT ACTTTTGGAACTCGAGTTAATCATTAATGACGTCATTGCACGTATTATAA TCAAACTCATTCTTCCAGTATGATTTTAAAACCTCAGACCCATAAAAAGA TGAATCATAGATATTTCCAATAATGATCAATAGCTGCAATCAActgtttt caaaagataaaaaacattaCAGTAATCTACTATAAACCTATAATGAACTC AAAATCCTAAAATTCTTTGATCTTGTTGAAACACTCAATATTATGTTCAT ATACCGCTACCTGAATAGATACCTTCCTTCTGACTGTCTTTCTACTTTTA CCTTTTCTGTAATTCCTCATGACATTGNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTT ATTAGGTTGCACCATTTGTAATTAGGTTTCTAAACTTGGTGTCCCTTCCT TcgggtaaatatatgttttgaattgaattgaattgaattgaactGTAAAA ATTCTTACCCAACCCAACACAACAAGTATAGAAGATATTTGAATACTGCT TCTTGGATGGTAAGTTTATTAGCTTGGTTTACCTTTGCAAATAAATCTAT CCTAATAAATCCCTGAACAAAATTTGGGCGTGTTCTCGAGAGCCGCTTTT TTCCGAACATTTTATCGCCCTTTCCAGACGGTTGTAATCGATATAGCTAA TCGATAATTAATTGAGGAGGTATATCCATTAGAATCGATCGACGTCTAAA AAATCATGAATATCGATTATTAGCTATCGATGATATCGATCAGATATCAA TCATATTGATCATATCAATTAGATATCGGTTCCATCGATCAGCTATGGAG TATATCGATTGGCTATCAATTTCTAATCGCTATTATCGATTATATCTCGT ATAATCGATTATCGATTAAAATTCTATAAGCTAGGGAGGTCGTTCGTCAG GATTTTTGCCACGGCAAAAAGAGAAAAACCCAAAACCAAAATTCAATCCA TTTAAACTTACTTTTCTACAATCCAAATTTGTTCATTCTTCattcagtct gggaaatcctctcaatacaccgtttaggagtctcgctatcttcacggtac tccattgcagaggccggtaaaaatggtaggtaaaaatgcacactttagta ctgtgaaaggttagaggaatgtaaacattgtgaatttctTTCTCTccttt taaagagaatgatttagatatttgaacatgatatcaatgataatttataa gtctctcctgaaaatttcacaaaaattcatcaagaggaagagaagttatg attaaaaggagttctttacctaccgtttttctgctatgtttccttatgag aaccagatgtttacctaccgtttttttacggaggagagtgaattttNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNttttttacggaggagagtgaattt tccgtggtcgctaaaatcaaaacaatggaaaattggattgacgcgtgcgc agtcgacactcctaaacggtgtattgcacgcttatgttccgaggccgtaa gcgcgatatgatttttcagtttgaatttatgtctaatgttattgattttt gaagtgcttgttctaagagatgagagaatataattatttttagttttcaa gagaagcaaatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccgccccccccccc cccccaccaccACAATCTCATAACTTTTTacaccatttttttcaaaaaaa atctctgGCATAAAACagcatcaaaatttatttggtCTTCTTATAAACTT ACATCCACATCTGCTAATGAGTATTATGTAGAAGAAATCTGATAtaccaa atcaaatcaaatggaCATATACATTTATACATTTTACATGTAGAAACCTC TGAAAGTCATGattaagtttttgttttttcagacATAATTTTCATCACCT GTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAACCAAATT ATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTATGGAGT AGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAATGGAGG CGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTCACATGA GTGAGTATTTAAGTgtctatttaaaatttttatctatttttacaGTAGCA CTTTCAGTGGCTGAAATAATGGTCAGACATTGTTCGACCCCAATTGCTGG AATGTTTTACCCAAATAAATAATGTCCCTTTCCTTCcaagtttttgtttg ttgttaTCTTTCGATATCCCTATCTTATATCGGACTCGTATATCACCGCA CTGACTTATACCGTTTTTCTACTATACAACATTGTTCCTTTGCAGGGCCT TCACACCCTCCGGGCTTCTTGTTTGATGAAAATGGATCatttgatgaaat attttttgtttagacTTTATTGTTGAGCATTGTTCATTGATGGAAAAGAT GGTGTTAAAAGCAGACCTGGTATCATGGAACAAAGAGTATAATTTTAGtt taaaaatctaaagaatTGACATGACAATGTAAGAAGAATACATTATtgca atgttttcatttttaatggtttttacTGGTTGAGTGTGTGTCACGCAGGT ACTCTTGGGTTCCTAATAAACGAGGGGtcggaaaatatttcaaaaattaa taaacgggcaGAC

Coding sequence (CDS) from alignment at scaffold_226:192758..196220+

>TCONS_00053112 ID=TCONS_00053112|Name=TCONS_00053112|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_226:192758..196220+ (Clytia hemisphaerica)
CAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGGGCT
TCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGacATAATTTTCATCA
CCTGTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAACCAA
ATTATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTATGG
AGTAGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAATGG
AGGCGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTCACA
TGACAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGG
GCTTCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGacATAATTTTCA
TCACCTGTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAAC
CAAATTATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTA
TGGAGTAGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAA
TGGAGGCGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTC
ACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033544XLOC_033544Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053112-proteinTCONS_00053112-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053112-exon-scaffold_226-1491911889:192758..192842TCONS_00053112-exon-scaffold_226-1491911889:192758..192842Clytia hemisphaericaexon
TCONS_00053112-exon-scaffold_226-1510915933:192758..192842TCONS_00053112-exon-scaffold_226-1510915933:192758..192842Clytia hemisphaericaexon
TCONS_00053112-exon-scaffold_226-1575043694:192758..192842TCONS_00053112-exon-scaffold_226-1575043694:192758..192842Clytia hemisphaericaexon
TCONS_00053112-exon-scaffold_226-1491911889:195440..195657TCONS_00053112-exon-scaffold_226-1491911889:195440..195657Clytia hemisphaericaexon
TCONS_00053112-exon-scaffold_226-1510915933:195440..195657TCONS_00053112-exon-scaffold_226-1510915933:195440..195657Clytia hemisphaericaexon
TCONS_00053112-exon-scaffold_226-1575043694:195440..195657TCONS_00053112-exon-scaffold_226-1575043694:195440..195657Clytia hemisphaericaexon
TCONS_00053112-exon-scaffold_226-1491911889:195971..196220TCONS_00053112-exon-scaffold_226-1491911889:195971..196220Clytia hemisphaericaexon
TCONS_00053112-exon-scaffold_226-1510915933:195971..196220TCONS_00053112-exon-scaffold_226-1510915933:195971..196220Clytia hemisphaericaexon
TCONS_00053112-exon-scaffold_226-1575043694:195971..196220TCONS_00053112-exon-scaffold_226-1575043694:195971..196220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:192758..196220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.30026 2.51427 1.98513 2.17063 0.973564 0.549517 0.795562 1.48959 1.21671 1.2918 3.44809 0.68686 1.09745 1.70957 3.92367 4.2107 2.47749 3.80902 1.09633 2.40918 2.39316 2.48051 2.71976 4.40777 0 0.29647 2.54548 3.01845 2.6328 2.68241
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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