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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053025 ID=TCONS_00053025|Name=TCONS_00053025|organism=Clytia hemisphaerica|type=transcript|length=3106bp
ATCAAATCGAACAAGATAAAGGCGACAAAAGTAATTTcttgttttggttt
tggtggATGGTGATTTCCATGATTTATCTTGATAAAGGCGCTCTATACTA
GTCATATTACAGTGAAAACGTACGGGTAACACACGGGAACATAAATATGT
TCGAGTTTAGGAAACTTAGAAATattgagtaaggtttataatTGAACAGA
CGAGACAACTTGTTCGAGCTACAGAGGTTTgagtagtctagcaagctaga
cgactaatttatacatagtagaaataaagcaaaaagtaatgaatggaaca
attttagtcgtttagaaacctttgtgcactaactctaaacaaaagaaaag
tgtcaatattgcaatttataattttttcctgctcaaaataattcttgaga
aaagaaatatgtgtggatttgtgtattgaaagttttttcatttgagttga
tttcgttctgagagtttgttgttgcttgataaattgttttctcgctacgc
aagtttctgcgtagctagcccctgtatctataaggctggaacaccggatt
cttccagtcgtttatacaaacttaatcccgtattattattattagtattg
gtattattagtattacacgcataatcgtcagccgtgcaaaattactcgaa
tctgattggcttagaggagtgcgattaattgttaattgcactattaccac
tttttgcactcttcggcggggggacacttttgtccccttattcttttctc
tcccaagtcctgtgtcagagactttttttactatataataaaaaaacaaa
gacattttttttcttcaatataaaaaagaacaaagaaattttacgttaca
atagcttcttttaattgaaaacaaagaaaaattacactgcaatgttttct
ttttaaacaaaagaaaaaaaggaggtttttgacgattactagtacttatA
AACGACTCCGGTCTAAGgtttgagttaaagagactgaaaggttttatttt
tacataagttagaacagcgtccgagattcagaaaaggctttaaaacaggt
tttcgtaGCTATCCagctgtgagaaagatttttcctaaaaatgCTCCCAG
CAAAATGCTGATGTGACTTAGCActtagaccagcggccgaggtagtgaat
CGTGCCACTTCGTAGGGCGCCACTTAGATTTCAGACacgtatttcatatc
aggacagtgtctgtaTGTTATTATATTAttctgatataagcaaaaaattg
tttatttcctctttctgaccaattttgtgccacatccgtgtcaattgaat
gtgaaaaagcttgtgaattgaaattgatgagtaagcaaacgatatctaAA
TTCATTTTTAGGTTATCAGTCTAAACTCGAACTAGATTTAATACCTAATA
CATTTTGTGAAAGTGTTGAGACTTACTTAgaaataattggcaatttacag
ttaaaaatgctCTGAAGTGAAATGGCTTTTTTTAGGGTTCATTTgataaa
ttccatgatggtgatattctaaacatattcttaaattttttggcCAGTCT
Cgtgaatattcttaaaagtatattcttagaaaaaaagcgtgtaaccttaa
gggaactaattgtTGCGTAACTAATTTTCGTTATAAAgctttttcacatg
cacgtaaaattttactttagaccttaTGGAAAATCGctcgtaaggctgtc
ttttgggaattttccCGACTTTGGGAtggtggggaatttccctaagctta
cgtatTGTTTTAAGGCGTTATCTAGAGTTTGCttactttcaaaaagtttt
gaacggaaaggaaagtcacgtaagaccctcttaatcGACAAAAACTCTAC
ATATTGTCGGGGAAATTCTCATAAGACAGCATACGAACGATTTTccgtaa
ggtctaaagtaaaattttacgtacatgtgaaaaaagcttcaGAAACACGA
GATAGAAGTTATTGGTAAGACGAATTTCTATTTATCCAGAGTCAAAATAC
CAACGATATCTGCGTTAAAAAATGAAAGCTTCGATACTAGTGGTATTGCT
GATTTCGATCATTGCTTGCCAATTGGTGGATGCAAAGAAGGAGAAGAGGA
AGCCCCaaaatgataaagaaaaaaaactcttcAAAGAGCAAATTGAAAAA
CGCCAGAAAGATGCAAAGAAGAAATTTAAAGATATGAAGAATTCCGATCA
GGTGGACCGTATGATGGGCAATTCTATCATGAGAGCAGACAAAAAAGGAG
GAAAACTAGCTATTCAAAGAAAAGGACAATATTTCGttatgaaaatcaaa
gaaattgtaGCAAGACATTCAAATGAAACCGAGATCACAAAGACAAAgct
aaaagatgtcaagttcaCAATCACTGGAGATAAGAATGATACGTCCACTT
ATGGTGTCCAAGCCGCTTATGTTCAAATGGTCGGTCGATTACCAAATGGT
GGGAATGTCACTCTCCAGCTATTCATGTTCAAAGATGCTGGTAATGTCAC
AGGTGAAGATGGAAACGTTTATGAACTTGTTGAAGGAGGAACCAAAGCGA
ATTTAAGAGTAGAGTGGCCAAACGAAGCTGATCATCTGGACTTGGTGATT
GCTGTCCAATGTGGGTTTGATGTGAAAAAAGCCAAGAAAGCTATGAAGGC
TATGAAAACACGTGGACGCAAAGGAATGAAAAAGGCGATGAACAGACGTA
ATCCCGAAACATTCTCCGTCTGCTCCAATGCCCGAATGACCTTTTCACCA
GCGTACAATACCAGTATGAGCGACAACAGCACTAGTATGGACTACGACAT
GCCAACTGGTTATCCTAAATCAAAAGAGCTATCCGGTGAAGGCGAATCCG
AAATCGTTCTTCGATTTAACGGAACCAGAATTTTTTACGATCCAACTGTA
GAAACAGGTGAAGATATTGGCGAAGAAGCCGAATTTGAAGCTTCCAACAA
CGCCATCTCTCTACACACGCCTAACCTCATCATTGCGGTAGtattttcga
tgatttttttaaaacttttattgtAATGCAATATATGATAACGAGTTGAA
TGTTACTTGAACCTTAAACAATGCAATACTGAAATACAACAGACACAAAT
TCTAAA Run BLAST on NCBI transcript from alignment at scaffold_224:21944..26348+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053025 ID=TCONS_00053025|Name=TCONS_00053025|organism=Clytia hemisphaerica|type=transcript|length=4405bp|location=Sequence derived from alignment at scaffold_224:21944..26348+ (Clytia hemisphaerica)
ATCAAATCGAACAAGATAAAGGCGACAAAAGTAATTTcttgttttggttt
tggtggATGGTGATTTCCATGATTTATCTTGATAAAGGCGCTCTATACTA
GTCATATTACAGTGAAAACGTACGGGTAACACACGGGAACATAAATATGT
TCGAGTTTAGGAAACTTAGAAATattgagtaaggtttataatTGAACAGA
CGAGACAACTTGTTCGAGCTACAGAGGTTTgagtagtctagcaagctaga
cgactaatttatacatagtagaaataaagcaaaaagtaatgaatggaaca
attttagtcgtttagaaacctttgtgcactaactctaaacaaaagaaaag
tgtcaatattgcaatttataattttttcctgctcaaaataattcttgaga
aaagaaatatgtgtggatttgtgtattgaaagttttttcatttgagttga
tttcgttctgagagtttgttgttgcttgataaattgttttctcgctacgc
aagtttctgcgtagctagcccctgtatctataaggctggaacaccggatt
cttccagtcgtttatacaaacttaatcccgtattattattattagtattg
gtattattagtattacacgcataatcgtcagccgtgcaaaattactcgaa
tctgattggcttagaggagtgcgattaattgttaattgcactattaccac
tttttgcactcttcggcggggggacacttttgtccccttattcttttctc
tcccaagtcctgtgtcagagactttttttactatataataaaaaaacaaa
gacattttttttcttcaatataaaaaagaacaaagaaattttacgttaca
atagcttcttttaattgaaaacaaagaaaaattacactgcaatgttttct
ttttaaacaaaagaaaaaaaggaggtttttgacgattactagtacttatA
AACGACTCCGGTCTAAGgtttgagttaaagagactgaaaggttttatttt
tacataagttagaacagcgtccgagattcagaaaaggctttaaaacaggt
tttcgtaGCTATCCagctgtgagaaagatttttcctaaaaatgCTCCCAG
CAAAATGCTGATGTGACTTAGCActtagaccagcggccgaggtagtgaat
CGTGCCACTTCGTAGGGCGCCACTTAGATTTCAGACacgtatttcatatc
aggacagtgtctgtaTGTTATTATATTAttctgatataagcaaaaaattg
tttatttcctctttctgaccaattttgtgccacatccgtgtcaattgaat
gtgaaaaagcttgtgaattgaaattgatgagtaagcaaacgatatctaAA
TTCATTTTTAGGTTATCAGTCTAAACTCGAACTAGATTTAATACCTAATA
CATTTTGTGAAAGTGTTGAGACTTACTTAgaaataattggcaatttacag
ttaaaaatgctCTGAAGTGAAATGGCTTTTTTTAGGGTTCATTTgataaa
ttccatgatggtgatattctaaacatattcttaaattttttggcCAGTCT
Cgtgaatattcttaaaagtatattcttagaaaaaaagcgtgtaaccttaa
gggaactaattgtTGCGTAACTAATTTTCGTTATAAAgctttttcacatg
cacgtaaaattttactttagaccttaTGGAAAATCGctcgtaaggctgtc
ttttgggaattttccCGACTTTGGGAtggtggggaatttccctaagctta
cgtatTGTTTTAAGGCGTTATCTAGAGTTTGCttactttcaaaaagtttt
gaacggaaaggaaagtcacgtaagaccctcttaatcGACAAAAACTCTAC
ATATTGTCGGGGAAATTCTCATAAGACAGCATACGAACGATTTTccgtaa
ggtctaaagtaaaattttacgtacatgtgaaaaaagcttcaGAAACACGA
GATAGAAGTTATTGGTAAGACGAATTTCTATTTATCCAGAGTCAAAATAC
CAACGATATCTGCGTTAAAAAATGAAAGCTTCGATACTAGTGGTATTGCT
GATTTCGATCATTGCTTGCCAATTGGTGGATGCAAAGAAGGAGAAGAGGA
AGCCCCaaaatgataaagaaaaaaaactcttcAAAGAGCAAATTGAAAAA
CGCCAGAAAGATGCAAAGAAGAAATTTAAAGATATGAAGAATTCCGATCA
GGTGGACCGTATGATGGGCAATTCTATCATGAGAGCAGACAAAAAAGGAG
GAAAACTAGCTATTCAAAGAAAAGGACAATATTTCGttatgaaaatcaaa
gaaattgtaGCAAGACATTCAAATGAAACCGAGGTACAGTTAACACAGAT
TTTTAGTCTTATAAAATAAGCATATTGAAGAAATTTTCCGGGCCTAAATG
TCGCCTTCTACCAAATAGCTTTGAATTTACGTCACACTTTCAGATAGAAT
CTAATTGATTTAGTCCCATGAAAATTTCACGGAGCTAGCTTGTTACAGTA
CCCTAAACTCTATAGGTGTCAAGAAGCAGATTCACGTGTTGTTAGTGAGA
TCTGAAGCTATCAACGGATGGTCTGTTTTAACTCAATTAACTGAAACTCT
TGGAAAACACTCCAATGCTTTATTTTAACTTTGTGGTATCCCGTGAAAGA
TTAGAAAGTGCAAAAGATCTGGTTTCTATTTCCtatggtttttaaaaatt
ttgcttttcttCTTTCACGTCACATCAGATCACAAAGACAAAgctaaaag
atgtcaagttcaCAATCACTGGAGATAAGAATGATACGTCCACTTATGGT
GTCCAAGCCGCTTATGTTCAAATGGTCGGTCGATTACCAAATGGTGGGAA
TGTCACTCTCCAGCTATTCATGTTCAAAGATGCTGGTAATGTCACAGGTG
AAGATGGAAACGTTTATGAACTTGTTGAAGGAGGAACCAAAGCGAATTTA
AGAGTGTAAGTAGCTATACTGATAGAAAGCATAATATTCTTTATAGCGTG
GCATTTTCAAGTCGTGCATAAGGCCTATGATAACCAATAAGGTATAGTTG
AAGACTACATTCGAATCCTCTATGTAGATttaaagccacttattttctAC
ATAAGTTGTGCGCCCTGCGTGTTTTTCATACAAACGCTAGATTAGATTAT
TTCCATCTCCCTGGGTTTAAAAATTCTCTTAGTTTCTCCATTACCATATG
ACTCACAATTCTAACTTTACAATTAAAGGCCTTCCCTTATCCTGAGAACC
CATCACCCTGAATTAATATAATTGGGTCTTCCACTTTCACACCTTTACCA
AAGTTGAGCGCAATGCTTACCTGTAAGTTACAGGTTTTACATTGTCCGTA
AAAGAATTGAgctatttgaaaattttgaaaaaatttattcacTATGGTCA
TAGAGCCCTTAAACATGAGAACTTTTTTTATCGACGCTTCCTCTCATTCT
TCTCGAACGTCCGAAACCTCCCCTTTGCTCTTACTCAAAGTATATTTTAG
GTATCATTTCTTTACATCTCTTTCAACCATATCATTCTTTAGAGAGTGGC
CAAACGAAGCTGATCATCTGGACTTGGTGATTGCTGTCCAATGTGGGTTT
GATGTGAAAAAAGCCAAGAAAGCTATGAAGGCTATGAAAACACGTGGACG
CAAAGGAATGAAAAAGGCGATGAACAGACGTAATCCCGAAACATTCTCCG
TCTGCTCCAATGCCCGAATGACCTTTTCACCAGCGGTAAATCataatgaa
atttcttgataCTTAATATTCTCATTTCATAAGTAGTTTTAAGTTTGATG
AGTATTTTGCTCCTAAACTCCAGAACGTCATGTTGCTAGTACAAAGAAGG
CCTCTAAGCTCTGATGATAAGAAATAAGAAAGGTTAAATATCTTATTGGA
CAGATAATAGATACGAGTCCTTCTatgattgtttgattttcactttttag
tCTTAAGTAAAGCTAgctaaaatgaaaatgtaaagaACTTCTTACGACTC
TAGTTATTCATTAAGATATCAACGCTTGCATTTTATGCTTCATCGATTTC
AGTACAATACCAGTATGAGCGACAACAGCACTAGTATGGACTACGACATG
CCAACTGGTTATCCTAAATCAAAAGAGCTATCCGGTGAAGGCGAATCCGA
AATCGTTCTTCGATTTAACGGAACCAGAATTTTTTACGATCCAACTGTAG
AAACAGGTGAAGATATTGGCGAAGAAGCCGAATTTGAAGCTTCCAACAAC
GCCATCTCTCTACACACGCCTAACCTCATCATTGCGGTAGtattttcgat
gatttttttaaaacttttattgtAATGCAATATATGATAACGAGTTGAAT
GTTACTTGAACCTTAAACAATGCAATACTGAAATACAACAGACACAAATT
CTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053025-exon-scaffold_224-1491911889:21944..24276 | TCONS_00053025-exon-scaffold_224-1491911889:21944..24276 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1510915933:21944..24276 | TCONS_00053025-exon-scaffold_224-1510915933:21944..24276 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1575043694:21944..24276 | TCONS_00053025-exon-scaffold_224-1575043694:21944..24276 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1491911889:24672..24898 | TCONS_00053025-exon-scaffold_224-1491911889:24672..24898 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1510915933:24672..24898 | TCONS_00053025-exon-scaffold_224-1510915933:24672..24898 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1575043694:24672..24898 | TCONS_00053025-exon-scaffold_224-1575043694:24672..24898 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1491911889:25486..25678 | TCONS_00053025-exon-scaffold_224-1491911889:25486..25678 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1510915933:25486..25678 | TCONS_00053025-exon-scaffold_224-1510915933:25486..25678 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1575043694:25486..25678 | TCONS_00053025-exon-scaffold_224-1575043694:25486..25678 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1491911889:25996..26348 | TCONS_00053025-exon-scaffold_224-1491911889:25996..26348 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1510915933:25996..26348 | TCONS_00053025-exon-scaffold_224-1510915933:25996..26348 | Clytia hemisphaerica | exon |
| TCONS_00053025-exon-scaffold_224-1575043694:25996..26348 | TCONS_00053025-exon-scaffold_224-1575043694:25996..26348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_224 | supercontig | scaffold_224:21944..26348 + |
Blast
The following BLAST results are available for this feature:
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