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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053006 ID=TCONS_00053006|Name=TCONS_00053006|organism=Clytia hemisphaerica|type=transcript|length=639bp AATTAGATGATATAACAGCACCAGTTTTCATTCAAGCCGATCCATGTCCA GTCTTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGCT TCTGTCTTTTCCACAAAATGATAACAACTTCAGAAATCTCACCACAAATG TGAGTGCTGGAAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAACAAGT GTCGAATATAAAACAATGGTTTATCTAAAGACGAAGTAtggaaaaagatt tgaaataagTGACATCAGTAGACCGTTGACAACTGTTGGGCTGACGAAAA CCACAACAACCACTACTACGACCACTACTACAACCACAATCACGACAGCT CAACCATCCAAGAAACCAATACCTGTTCAAATTGATGAAGAAGAAAATCT GCAAACAATATCAATCATCGGAGGTTATTTCGGTGGAATTGGAACAGTTC TTTTGGTCGAGTTCATCATCTTCATTTTGTACCGTTATTCAAAACAACGA AAGAAAGATATGGACCAAGattttaatcTGTCTGCTGTAAGGTAAGTGTT AATTGAAAAGTACTAGACATTATATTCTGTCGTTAGCAGGTTAGTAGGCA AAAAGGCTACACTGATTACTTAATTATACTGATTTCGAT Run BLAST on NCBI protein sequence of TCONS_00053006-protein >TCONS_00053006-protein ID=TCONS_00053006-protein|Name=TCONS_00053006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
LDDITAPVFIQADPCPVLTWDAEDHGLCEVDLLLSFPQNDNNFRNLTTNV SAGSFRDCCFTAHATSVEYKTMVYLKTKYGKRFEISDISRPLTTVGLTKT TTTTTTTTTTTTITTAQPSKKPIPVQIDEEENLQTISIIGGYFGGIGTVL LVEFIIFILYRYSKQRKKDMDQDFNLSAVR Run BLAST on NCBI transcript from alignment at scaffold_223:61652..64192- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053006 ID=TCONS_00053006|Name=TCONS_00053006|organism=Clytia hemisphaerica|type=transcript|length=2541bp|location=Sequence derived from alignment at scaffold_223:61652..64192- (Clytia hemisphaerica) AATTAGATGATATAACAGCACCAGTTTTCATTCAAGCCGATCCATGTCCA
GTCTTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGCT
TCTGTCTTTTCCACAAAATGATAACAACTTCAGAAATCTCACCACAAATG
TGAGTGCTGGAAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAACAAGT
GTCGAATATAAAACAATGGTTTATCTAAAGACGAAGTATGGAAAAAGATT
TGAAATAAGTGACATCAGTAGACCGTTGACAACTGTTGGGCTGACGAAAA
CCACAACAACCACTACTACGACCACTACTACAACCACAAGTATCAATTTC
TCTTTCTTCTGTCTATATCTTCAATATTTCTATGTTTGCAATAAATTACA
CGGTGCTTTTTTTAGACCTTGGAACTACTTAGGAAACACTACGGGATAAA
TTGAAACCTTCCATCAATGACTTTTACTCTTTCAGTCACGACAGCTCAAC
CATCCAAGAAACCAATACCTGTTCAAATTGATGAAGAAGGTCAGTAAGAT
TCTGTTTAGTAAGGATCGAGCAAAAAGGTCCCGCGTGACGTCTTTTATTG
AACTAAAACGTGCGATAGTATAATGGAGCTCATAACTTTCAAAGGGAATT
GGGCTTATTTGAAAACATTTTATCACCAAAACTACAATTGGTGCCTAACA
TATTGGCATTTTTGGCTATTTTACCATTTTTCCAAAAGTTCGAGCGAGAA
TGTCAATTTCAGGCTTTCAACTTGACTTCATTGATTATTTCTATCTGGGA
GGGATTTATTGGTTTCTAAAGTCTATTCACTATAAGTGTGCACTCTTTTT
TCTTTTACCTATAACCTTTGAAGGAATTCTTCGATCTTTATAAATTTGGT
ATCATTGGAAAGATATTAGTGAGTGGAACAATTTGAAATAAAAAAATCTT
TAAAAAAATTCTAAAAATTAAGATGAAAAAGAAGAAGAAAAAAATGAAGA
TCTTGTAGAAAAGTGCTATAACTTTCATTTTCACTGGAGAGATTCCTTGA
TCTTAGTAGATCATCACTGTGAAGAAATTTCATTAAAATGTTTATTCAAT
ATAAAGTTATGATACAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAA
AAAACTGCAGAAAACAGCGTTTTTAGACGTCAATCAGCTTATAACTTTGT
TTGATATCTTTTGACTGAATAAATTTTTTTCAGAATTTTTTTCACAGTGA
TGACGTTCGATGATCAAAGATTCACTTCAGTGAAAATGATAGTTATAGCA
CTTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTT
TATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTATTTC
AAATTGTTCCACTCACTAATATCTTTCCAATGATACCAAATTTATAAAGA
TTGAAGAATTCCTTCAAAAGTTATAGGTAAATGAAAAATGAGTGCGCACT
TATCGTGAATAGACTTTAGGCTATATTTCAAGTCCAACCAGACCATTTTT
GAACTTCTAGATCCACAGATCCTAAGGTCTTAAGTCTTAAGTTTAGCGTT
AAAACTCTGAGTTAAAACTCTACACTTCCAATCTAATTTAGAGCGCTTCC
AAATTGTTTTTAGTTATAGAATTTCGTGGGGAATTTCCCTTTTGTGCAAA
GTATCTTGGAACAGATTGTAGGACTTATTTGAGGTGTTTTTAAGTTAATA
AAAGTGTCCTATCTTTGTTGATAAATTCGACCTTAAAATATTTGATTCTT
CTAAAACTTCCTCAGGTCTAATATTTAATACAGCGAAAGTCAGTTTGTTC
AGTTCACGGAATGGTATTTTCTTTGGTGAAATCCAGAGATAATAATTACT
CACTCATTTTATAGAAAATCTGCAAACAATATCAATCATCGGAGGTTATT
TCGGTGGAATTGGAACAGTTCTTTTGGTCGAGTTCATCATCTTCATTTTG
TACCGTTATTCAAAACAACGAAAGAAAGATATGGACCAAGGTAACAATTA
GACTGTACAAAATTCACTTCGCGAAAAAGAGCCTTGAAGTACTAACTGAC
TAACTCTAATTTAACCTCTATTATTCGATCAAACTTTTTCTAGCGAAAAA
AGCCGTTCAGTACAGACAACTCTCTCTCTCTAAATCGAATCACTTTCATT
CGAATCTTTTTGCAATTCGAACAAAAATATTTGACCCCTCAGCTGGAAAT
TGGTTTAAGTGATTTAACTCTCTGTTATTCGAATCTTTTTAAGAATAAAT
GTTTCCTCTCTATTTTTTTAGATTTTAATCTGTCTGCTGTAAGGTAAGTG
TTAATTGAAAAGTACTAGACATTATATTCTGTCGTTAGCAGGTTAGTAGG
CAAAAAGGCTACACTGATTACTTAATTATACTGATTTCGAT Coding sequence (CDS) from alignment at scaffold_223:61652..64192- >TCONS_00053006 ID=TCONS_00053006|Name=TCONS_00053006|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_223:61652..64192- (Clytia hemisphaerica) ATTTTAATCTGTCTGCTGTAAGGTAAAAAATCTGCAAACAATATCAATCA TCGGAGGTTATTTCGGTGGAATTGGAACAGTTCTTTTGGTCGAGTTCATC ATCTTCATTTTGTACCGTTATTCAAAACAACGAAAGAAAGATATGGACCA AGTCACGACAGCTCAACCATCCAAGAAACCAATACCTGTTCAAATTGATG AAGAAGTTAGATGATATAACAGCACCAGTTTTCATTCAAGCCGATCCATG TCCAGTCTTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATT TGCTTCTGTCTTTTCCACAAAATGATAACAACTTCAGAAATCTCACCACA AATGTGAGTGCTGGAAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAAC AAGTGTCGAATATAAAACAATGGTTTATCTAAAGACGAAGTATGGAAAAA GATTTGAAATAAGTGACATCAGTAGACCGTTGACAACTGTTGGGCTGACG AAAACCACAACAACCACTACTACGACCACTACTACAACCACAAATTTTAA TCTGTCTGCTGTAAGGTAAAAAATCTGCAAACAATATCAATCATCGGAGG TTATTTCGGTGGAATTGGAACAGTTCTTTTGGTCGAGTTCATCATCTTCA TTTTGTACCGTTATTCAAAACAACGAAAGAAAGATATGGACCAAGTCACG ACAGCTCAACCATCCAAGAAACCAATACCTGTTCAAATTGATGAAGAAGT TAGATGATATAACAGCACCAGTTTTCATTCAAGCCGATCCATGTCCAGTC TTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGCTTCT GTCTTTTCCACAAAATGATAACAACTTCAGAAATCTCACCACAAATGTGA GTGCTGGAAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAACAAGTGTC GAATATAAAACAATGGTTTATCTAAAGACGAAGTATGGAAAAAGATTTGA AATAAGTGACATCAGTAGACCGTTGACAACTGTTGGGCTGACGAAAACCA CAACAACCACTACTACGACCACTACTACAACCACAAATTTTAATCTGTCT GCTGTAAGGTAAAAAATCTGCAAACAATATCAATCATCGGAGGTTATTTC GGTGGAATTGGAACAGTTCTTTTGGTCGAGTTCATCATCTTCATTTTGTA CCGTTATTCAAAACAACGAAAGAAAGATATGGACCAAGTCACGACAGCTC AACCATCCAAGAAACCAATACCTGTTCAAATTGATGAAGAAGTTAGATGA TATAACAGCACCAGTTTTCATTCAAGCCGATCCATGTCCAGTCTTGACAT GGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGCTTCTGTCTTTT CCACAAAATGATAACAACTTCAGAAATCTCACCACAAATGTGAGTGCTGG AAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAACAAGTGTCGAATATA AAACAATGGTTTATCTAAAGACGAAGTATGGAAAAAGATTTGAAATAAGT GACATCAGTAGACCGTTGACAACTGTTGGGCTGACGAAAACCACAACAAC CACTACTACGACCACTACTACAACCACAAATTTTAATCTGTCTGCTGTAA GGTAAAAAATCTGCAAACAATATCAATCATCGGAGGTTATTTCGGTGGAA TTGGAACAGTTCTTTTGGTCGAGTTCATCATCTTCATTTTGTACCGTTAT TCAAAACAACGAAAGAAAGATATGGACCAAGTCACGACAGCTCAACCATC CAAGAAACCAATACCTGTTCAAATTGATGAAGAAGTTAGATGATATAACA GCACCAGTTTTCATTCAAGCCGATCCATGTCCAGTCTTGACATGGGATGC AGAAGACCATGGATTATGCGAAGTGGATTTGCTTCTGTCTTTTCCACAAA ATGATAACAACTTCAGAAATCTCACCACAAATGTGAGTGCTGGAAGTTTT CGAGATTGCTGTTTTACTGCGCACGCAACAAGTGTCGAATATAAAACAAT GGTTTATCTAAAGACGAAGTATGGAAAAAGATTTGAAATAAGTGACATCA GTAGACCGTTGACAACTGTTGGGCTGACGAAAACCACAACAACCACTACT ACGACCACTACTACAACCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053006-exon-scaffold_223-1575043694:63854..64192 | TCONS_00053006-exon-scaffold_223-1575043694:63854..64192 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1575043694:63654..63707 | TCONS_00053006-exon-scaffold_223-1575043694:63654..63707 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1575043694:62053..62178 | TCONS_00053006-exon-scaffold_223-1575043694:62053..62178 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1575043694:61652..61771 | TCONS_00053006-exon-scaffold_223-1575043694:61652..61771 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1510915933:63854..64192 | TCONS_00053006-exon-scaffold_223-1510915933:63854..64192 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1510915933:63654..63707 | TCONS_00053006-exon-scaffold_223-1510915933:63654..63707 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1510915933:62053..62178 | TCONS_00053006-exon-scaffold_223-1510915933:62053..62178 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1510915933:61652..61771 | TCONS_00053006-exon-scaffold_223-1510915933:61652..61771 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1491911889:63854..64192 | TCONS_00053006-exon-scaffold_223-1491911889:63854..64192 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1491911889:63654..63707 | TCONS_00053006-exon-scaffold_223-1491911889:63654..63707 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1491911889:62053..62178 | TCONS_00053006-exon-scaffold_223-1491911889:62053..62178 | Clytia hemisphaerica | exon |
TCONS_00053006-exon-scaffold_223-1491911889:61652..61771 | TCONS_00053006-exon-scaffold_223-1491911889:61652..61771 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_223 | supercontig | scaffold_223:61652..64192 - |
Blast
The following BLAST results are available for this feature:
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