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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052946 ID=TCONS_00052946|Name=TCONS_00052946|organism=Clytia hemisphaerica|type=transcript|length=727bpRun BLAST on NCBI transcript from alignment at scaffold_222:53057..76970- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052946 ID=TCONS_00052946|Name=TCONS_00052946|organism=Clytia hemisphaerica|type=transcript|length=23914bp|location=Sequence derived from alignment at scaffold_222:53057..76970- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052946 vs. Swiss-Prot (Human)
Match: JAG2 (Protein jagged-2 OS=Homo sapiens GN=JAG2 PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 8.524e-30 Identity = 95/244 (38.93%), Postives = 116/244 (47.54%), Query Frame = 3
Query: 3 GTCIDAYPTGFECSCPTGFSGNLCRMVNVCDTYGLLCQNGGTCIADGTVDGFSCTCAAGYSGAYCTQS--ACGANSCQNGGTCIPGANGDYTCQCPPGTSGALCQNSV--CGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINLACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTC--TESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGENPCLNGGDC 713
GTCI+A P + C+CP G+SG C T C NGG+C GF C C +G+SG C C +N C GGTC+ +G + C CP GA CQ C PC N SC G C C W G+ C IN+ CQ GGTC LV +GY C C GF G+ C C+ +PC +G C + A+GF C C G S PLC V D C +PC NG C
Sbjct: 321 GTCINAEPDQYRCTCPDGYSGRNCEKAEHACTSNP-CANGGSCHE--VPSGFECHCPSGWSGPTCALDIDECASNPCAAGGTCVDQVDG-FECICPEQWVGATCQLDANECEGKPCLNAFSCKNLIGGYYCDCIPGWKGINCHINVNDCRGQCQHGGTC--KDLV-NGYQCVCPRGFGGRHCELERDECASSPCHSGGLC--EDLADGFHCHCPQGFSGPLCEVDVDLCEP----SPCRNGARC 551 HSP 2 Score: 113.62 bits (283), Expect = 6.655e-28 Identity = 88/232 (37.93%), Postives = 113/232 (48.71%), Query Frame = 3
Query: 3 GTCIDAYPTGFECSCPTGFSGNLCRMVNVCDTYGLLCQNGGTCIADGTVDGFSCTCAAGYSGAYC--TQSACGANSCQNGGTCIPGANGDYTCQCPPGTSGALC---QNSVCGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINL-ACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGT 674
GTCID F C CP+G+ G LC N D C + G C V+ F C C G+ G C + C A +C NGGTC + + C CPPG G+ C +NS C NPC NGG+C + C C W G TC N CN PC +GG C + + C CA GF+G C + C +PCA G+TCV + NG+ C+C G++ P C G G
Sbjct: 649 GTCIDEV-DAFRCFCPSGWEGELCD-TNPNDCLPDPCHSRGRCY--DLVNDFYCACDDGWKGKTCHSREFQCDAYTCSNGGTCYDSGD-TFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGV---NWFRCECAPGFAGPDCRINIDECQSSPCAYGATCVDE--INGYRCSCPPGRAGPRCQEVIGFGR 870 HSP 3 Score: 95.1301 bits (235), Expect = 1.287e-21 Identity = 85/260 (32.69%), Postives = 117/260 (45.00%), Query Frame = 3
Query: 30 GFECSCPTGFSGNLCRM-VNVCDTYGLLCQNGGTCIADGTVDG-FSCTCAAGYSGAYCTQSA-------------CGANS------------CQNGGTCIPGANGDYTCQCPPGTSGALCQNSV--CGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINL-ACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTC--TESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGTVSGENPCLNGGDC 713
GF C CP GFSG LC + V++C+ C+NG C ++G + C C + G C+ CG+++ C G C+ G+++C C G +G C ++ C PC+NGG+C D +C C + W G C+ N C +PC S G C LV D Y C C DG+ G+TC E C C+ G TC S + F C C G C VA + NPC+NGG C
Sbjct: 519 GFHCHCPQGFSGPLCEVDVDLCEPSP--CRNGARCY---NLEGDYYCACPDDFGGKNCSVPREPCPGGACRVIDGCGSDAGPGMPGTAASGVCGPHGRCVSQPGGNFSCICDSGFTGTYCHENIDDCLGQPCRNGGTCIDEVDAFRCFCPSGWEGELCDTNPNDCLPDPCHSRGRC--YDLVNDFY-CACDDGWKGKTCHSREFQCDAYTCSNGGTCY--DSGDTFRCACPPGWKGSTCAVAKNSSCLP--NPCVNGGTC 766 HSP 4 Score: 94.3597 bits (233), Expect = 2.333e-21 Identity = 73/215 (33.95%), Postives = 99/215 (46.05%), Query Frame = 3
Query: 36 ECSCPTGFSGNLCRMVNVCDTYGLLCQNGGTCIADGTVDGFSCTCAAGYSGAYCTQSA--CGANS-CQNGGTCIPGANGDYTCQCPPGTSGALCQNS--VCGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINL-ACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTCT--ESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV 656
EC C G+ G C + C Y C+ V+ + C C + G C + CG++ C NGGTCI Y C CP G SG C+ + C +NPC NGGSC G +C C + WSG TC +++ C NPC +GGTC DG+ C C + + G TC + C G PC +C G+ C C G C++
Sbjct: 261 ECRCSYGWQGRFC---DECVPYP-------GCVHGSCVEPWQCNCETNWGGLLCDKDLNYCGSHHPCTNGGTCINAEPDQYRCTCPDGYSGRNCEKAEHACTSNPCANGGSCHEVPSGFECHCPSGWSGPTCALDIDECASNPCAAGGTCVDQV---DGFECICPEQWVGATCQLDANECEGKPCLNAFSC--KNLIGGYYCDCIPGWKGINCHI 460 HSP 5 Score: 88.9669 bits (219), Expect = 1.283e-19 Identity = 84/246 (34.15%), Postives = 109/246 (44.31%), Query Frame = 3
Query: 3 GTCIDAYPTGFECSCPTGFSGNLCRMVNV-CDTYGLLCQNGGTCIADGTVDGFSCTCAAGYSGAYC---TQSACGANSCQNGGTCIPGANGDYTCQCPPGTSGALCQNSV--CGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINL-ACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTCTESSCSGNPCATGSTCVPDASANGF---SCTCAAGQSNPLCNVADGCGTVS-GENPCLNGG 707
G C D F C+C G+ G C CD Y C NGGTC G D F C C G+ G+ C S+C N C NGGTC+ G+ ++C C G G C ++ C PC NGG C + +C C+ ++G C IN+ C +PC G TC +GY C+C G +G C E G C + T P S+ SC C G+ + C V G PCL G
Sbjct: 687 GRCYDLV-NDFYCACDDGWKGKTCHSREFQCDAY--TCSNGGTCYDSG--DTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCV-GSGASFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGVNWFRCECAPGFAGPDCRINIDECQSSPCAYGATCVDEI---NGYRCSCPPGRAGPRCQEVIGFGRSCWSRGTPFPHGSSWVEDCNSCRCLDGRRD--------CSKVWCGWKPCLLAG 915 The following BLAST results are available for this feature:
BLAST of TCONS_00052946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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