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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052799 ID=TCONS_00052799|Name=TCONS_00052799|organism=Clytia hemisphaerica|type=transcript|length=509bp
gcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGAT
AACTTGTTTTCAGTGTCAGAAGATTcagttagaaaaaaagaaagaaagga
aaacttcaaaatggtaaaaagcTATCAATCTTGATGAAGAGTTGATTTGG
agagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCG
GCAAGAAACCAAGAAAATATTCTATAGAAGGAAAAGATGAAGACCTGATA
CGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAA
TGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTG
AAGATGAGAAAGGCCAACAAGGTTTGTCTGCGTTACATTTGGCTGCGCGT
CACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGT
AGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGT
ATGGATATG Run BLAST on NCBI transcript from alignment at scaffold_220:69053..70867+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052799 ID=TCONS_00052799|Name=TCONS_00052799|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at scaffold_220:69053..70867+ (Clytia hemisphaerica)
gcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGAT
AACTTGTTTTCAGTGTCAGAAGATTcagttagaaaaaaagaaagaaagga
aaacttcaaaatggtaaaaagcTATCAATCTTGATGAAGAGTTGATTTGG
agagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCG
GCAAGAAACCAAGAAAATATTCTATAGAAGGAAAAGATGAAGACCTGATA
CGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAA
TGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTG
AAGATGAGAAAGGCCAACAAGGGTAAGAAGATTctatctttttataagaa
caagaaaatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTAT
AACCCTCAAATTgctcttatcctgttcttattctTTTGACAATATTAAGG
AACTAAAGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTTTCATT
CATTGCAGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGGA
ATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGATC
GCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATATGATGAC
TGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGG
AAGCGAGGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACGG
TCCTACGTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAATC
GAGATAAAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGAT
TTTTCGATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTAC
CAGTCCGCACCGCTAAGTACTGACAGGCGTataccacagatatcttatat
aaaacactagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCAC
CATCTTTAAtaagtagaccatagttcggtGTTGGCaattttatcgatctt
tcgcctCACCGTTTCGTGCCAAACTGTGACCTACTCTGGCCTACTTTACT
TCCAACAAAGAcggcgcattattttgcttcacctgccgtTGCTTGCGAAA
TACAGAGTAGCTATATTTAGTGTTTTATGTAAGATATCTATGGTGTATAA
AATAACAACATGCAATCCTCAAGTAAATTGAATGAcgacaaaaacaattt
tttcactaaCACTACTGTCTTNAAGAAACCAAGAAAATATTCTATAGAAG
GAAAAGATGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACG
GGCAAAACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTT
TGATCTCAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAG
ATTctatctttttataagaacaagaaaatttttcttgagGATCGGCTCTT
CTACTTTTTTTTTGCGCTATAACCCTCAAATTGCTCTTATCCTGTCCTTA
TTCTTTTGACAATATTAAGGAACTAAAGGCTTTTAACCAATTTCTACTAC
TTTGACcctcaattttcattcattgcaGTTTGTCTGCGTTACATTTGGCT
GCGCGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGC
GTATGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAG
CGTTGTATGGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052799-exon-scaffold_220-1491911889:69053..69424 | TCONS_00052799-exon-scaffold_220-1491911889:69053..69424 | Clytia hemisphaerica | exon |
| TCONS_00052799-exon-scaffold_220-1510915933:69053..69424 | TCONS_00052799-exon-scaffold_220-1510915933:69053..69424 | Clytia hemisphaerica | exon |
| TCONS_00052799-exon-scaffold_220-1575043694:69053..69424 | TCONS_00052799-exon-scaffold_220-1575043694:69053..69424 | Clytia hemisphaerica | exon |
| TCONS_00052799-exon-scaffold_220-1491911889:70731..70867 | TCONS_00052799-exon-scaffold_220-1491911889:70731..70867 | Clytia hemisphaerica | exon |
| TCONS_00052799-exon-scaffold_220-1510915933:70731..70867 | TCONS_00052799-exon-scaffold_220-1510915933:70731..70867 | Clytia hemisphaerica | exon |
| TCONS_00052799-exon-scaffold_220-1575043694:70731..70867 | TCONS_00052799-exon-scaffold_220-1575043694:70731..70867 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:69053..70867 + |
Blast
The following BLAST results are available for this feature:
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