TCONS_00052614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052614
Unique NameTCONS_00052614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052614 ID=TCONS_00052614|Name=TCONS_00052614|organism=Clytia hemisphaerica|type=transcript|length=549bp
agaaaaacattgaaaatagaACATTGAAGAATCAAGAACATGGCACTTAA
TCAAGATACAGTTGGTGGTTATGATGTGGAGCTGGCGAACGGTGAAGAAA
ACAGTGTGATTTGCCCAATATGTCTTCACGTCCTCAGAGAACCGATGCAG
GCTGTTGATTGTGGACACAGATTCTGCAGAACATGTGTAGATCAATTGGT
TCGAAATGATTCATTATTGGTCAATGAGCATCTACATACCATTCTCCCAA
ATGCAAACGGCCGATATACATGTCCAGAAGATCGTAGTGTAATGACATTA
TTTCAAGATCGAGGAAGGGAGCGCGAAATCATGTCACTTCTGGTAAAATG
TAGAAACGTTAGAAATGGTTGCCATTGGTCACATGAATTACGTCATCTCG
AGACTCACCAATCGGAATGTGGTTACGAGGAAACGCATTGTGTCATCACT
TTATGCTCAAAAAGAGTTCAAAGAAGATTGTTAGAGCAACATCATTCTGA
AGAATGTGATTACAGATTAGTCATTTGTTTATATTGTTCAGATGAATAT
Run BLAST on NCBI

transcript from alignment at scaffold_218:689396..690941+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052614 ID=TCONS_00052614|Name=TCONS_00052614|organism=Clytia hemisphaerica|type=transcript|length=1546bp|location=Sequence derived from alignment at scaffold_218:689396..690941+ (Clytia hemisphaerica)
agaaaaacattgaaaatagaACATTGAAGAATCAAGAACATGGCACTTAA
TCAAGATACAGTTGGTGGTTATGATGTGGAGCTGGCGAACGGTGAAGAAA
ACAGTGTGATTTGCCCAATATGTCTTCACGTCCTCAGAGAACCGATGCAG
GCTGTTGATTGTGGACACAGATTCTGCAGAACATGTGTAGATCAATTGGT
TCGAAAGTATGTGGTTCATTTTCTAAATTAGGAAATTATTACCAGTAGGG
TGATGCACATTATAGAACATCTTTCACAAGACAGGTTGATTTGTCAGcca
attttgaatttctttaagCAGACTTAGGTTATGTCTGGCTTCAATGTAGC
GATTATTAAGATTTTGGCCAGAGTTTTTACAAtgcttttttgttgatttt
tcgtGTTCCGACAGCGTTTAATCTTTTGCTTTTCAGTGATTCATTATTGG
TCAATGAGCATCTACATACCATTCTCCCAAAgtataaaatattcttaatc
aAATCTAGTGTTTCTACCGTCGTTATAAAACCATAGTTACCTccaaaatt
tgaatcaaaaagcTTTAGTTGGTATTGTTAGTTAACCCTGAAATTTATGC
ACCTGCAGTAACTTCTTGTGAACTTCTTTGATAGAATCAAAGGATAGACC
TGTCAAGGAACAACTGTCACCGTGTTTTAGAGTAACTGTTTGACGTCCtg
tctttttcatgttttacagTGCAAACGGCCGATATACATGTCCAGAAGAT
CGTAGTGTAATGACAGTAAGTCTTCAAGCTTGCATTCATGTGGAATGTTT
TCTAGACTCTTTTAGAGaaatcaatttttaataaaGTCTGCAGACTCAAC
CTTAACGAGGTAAAATATGTTGCCACAGGTTATAAAGTTTCTTCAATCCC
TTTTTGCCAGTTATTTCAAGATCGAGGAAGGGAGCGCGAAATCATGTCAC
TTCTGGTAAAATGTAGAAACGTTAGAAATGGTTGCCATTGGTCACATGAA
TTACGTCATCTCGAGgtaaaattattatattttcGCATAGTGAAACTTCT
CAGATCAGTtgcatttttaccattttaggACTCTGGCTGCGAAAtaccca
aaaaataaaaaacattgattttctAGCCGtcagttttaaaggttttgtat
tTACATAAGTTTTCCCGTTCCCtaccagacacatatttcatatcaggaca
gtgtctgtctattgttatattgtgcttatataagcaaaaaatgtttttct
tttcctcttgctGACCAatatcttgctccacatctgtatcaattcaatgt
gaaaaagcttgtaaattaaattgatgattaagcaaatgatatcactctta
tttaaaaacaaaacctttaaggtaTAGGTATGATATCTTGATTTCTTAGA
CTCACCAATCGGAATGTGGTTACGAGGAAACGCATTGTGTCATCACTTTA
TGCTCAAAAAGAGTTCAAAGAAGATTGTTAGAGCAACATCATTCTGAAGA
ATGTGATTACAGATTAGTCATTTGTTTATATTGTTCAGATGAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033256XLOC_033256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052614-exon-scaffold_218-1491911889:689396..689601TCONS_00052614-exon-scaffold_218-1491911889:689396..689601Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1510915933:689396..689601TCONS_00052614-exon-scaffold_218-1510915933:689396..689601Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1575043694:689396..689601TCONS_00052614-exon-scaffold_218-1575043694:689396..689601Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1491911889:689832..689876TCONS_00052614-exon-scaffold_218-1491911889:689832..689876Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1510915933:689832..689876TCONS_00052614-exon-scaffold_218-1510915933:689832..689876Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1575043694:689832..689876TCONS_00052614-exon-scaffold_218-1575043694:689832..689876Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1491911889:690115..690160TCONS_00052614-exon-scaffold_218-1491911889:690115..690160Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1510915933:690115..690160TCONS_00052614-exon-scaffold_218-1510915933:690115..690160Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1575043694:690115..690160TCONS_00052614-exon-scaffold_218-1575043694:690115..690160Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1491911889:690306..690410TCONS_00052614-exon-scaffold_218-1491911889:690306..690410Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1510915933:690306..690410TCONS_00052614-exon-scaffold_218-1510915933:690306..690410Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1575043694:690306..690410TCONS_00052614-exon-scaffold_218-1575043694:690306..690410Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1491911889:690795..690941TCONS_00052614-exon-scaffold_218-1491911889:690795..690941Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1510915933:690795..690941TCONS_00052614-exon-scaffold_218-1510915933:690795..690941Clytia hemisphaericaexon
TCONS_00052614-exon-scaffold_218-1575043694:690795..690941TCONS_00052614-exon-scaffold_218-1575043694:690795..690941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:689396..690941 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.871729	2.06616	0	0	0	0.555982	0	0.627965	0.228347	0	0	0	0	0	0.354539	0	0	0	0	0	0	0	1.33368	0.442385	0	0	0.429238	0	0.486342	1.0604
Blast
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BLAST of TCONS_00052614 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.223e-20
Identity = 46/166 (27.71%), Postives = 80/166 (48.19%), Query Frame = 1 
Query:   61 VGGYDVELANGEENSVICPICLHVLREPMQAVDCGHRFCRTCVDQLVRNDSLLVNEHLHTILPNANGRYTCPEDRSVM---TLFQDRGREREIMSLLVKCRNVRNGCHWSHELRHLETHQSECGYEETHCVITLCSKRVQRRLLEQHHSEECDYRLVICLYCSDEY 549
            + G+D +     +  ++CP+C   +REP+Q   CGHRFC TC+ + +                 + G + CPED+  +    ++ D   E +++ L ++C +   GC WS  LRHL+ H + C +    C    C  ++ RR L  H   +C  R + C +C  ++
Sbjct:    1 MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFL-----------------SEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCP-NRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDF 148
The following BLAST results are available for this feature:
BLAST of TCONS_00052614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF41.223e-2027.71TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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