|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005222 ID=TCONS_00005222|Name=TCONS_00005222|organism=Clytia hemisphaerica|type=transcript|length=2524bpRun BLAST on NCBI protein sequence of TCONS_00005222-protein >TCONS_00005222-protein ID=TCONS_00005222-protein|Name=TCONS_00005222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp MAAENQDDSLYPIAVLIDELRNEDLQLRLNSIKKLSTIALALGVTRTRTERun BLAST on NCBI transcript from alignment at sc0000051:520613..546448- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005222 ID=TCONS_00005222|Name=TCONS_00005222|organism=Clytia hemisphaerica|type=transcript|length=25836bp|location=Sequence derived from alignment at sc0000051:520613..546448- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:520613..546448- >TCONS_00005222 ID=TCONS_00005222|Name=TCONS_00005222|organism=Clytia hemisphaerica|type=CDS|length=26415bp|location=Sequence derived from alignment at sc0000051:520613..546448- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005222 vs. Swiss-Prot (Human)
Match: 2AAA (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4) HSP 1 Score: 898.656 bits (2321), Expect = 0.000e+0 Identity = 433/585 (74.02%), Postives = 500/585 (85.47%), Query Frame = 1
Query: 181 MAAENQDDSLYPIAVLIDELRNEDLQLRLNSIKKLSTIALALGVTRTRTELVPFLTDTIYDEDEVLLALAEQLATFTPLIGGPEYVNILIPPLESLATVEETVVRDKAVESLRQIAADHSNADLENYFVPLVKRLAQGDWFTTKTSACGLFASCYARVNNTIKADLRSAFKTLCCDETPMVRRAATGKLGEFAKTVEIDNLKADIIPSFQSLAVDDHDSVRLLAVEACVSIAGILPDSDKEALIMPTLRNVAQDKSWRVRYMVADKIVDLQKALGPELSKVDLVPAYFQLLKDVESEVKTAAAHKVKEFCEGLPDDIKEQAIMSNILPCVKDLVIDPNMHVKSALAGVIMGLAPMLGKDNTIEHLLPLFLTMLKDEFPDVRLNIISNIDSVNKVIGIHQLSQSLLPAIMELAEDPKWRVRLAIIEYMPLLAGQLGVQFFDEKLNQLCMSWLVDHVYAIREAAAINLKKLIEKFGLEWAQNTVIPKVLAMAKDTNYLHRMTTLFTINTMLDVAGPEITAQFILPTVVGLAKDNVANVRFNVAKTLQKIATILDPNSIQGTIKPCLNQLNTDIDVDVKYFAGEALLV 1935
MAA + DDSLYPIAVLIDELRNED+QLRLNSIKKLSTIALALGV RTR+EL+PFLTDTIYDEDEVLLALAEQL TFT L+GGPEYV+ L+PPLESLATVEETVVRDKAVESLR I+ +HS +DLE +FVPLVKRLA GDWFT++TSACGLF+ CY RV++ +KA+LR F+ LC D+TPMVRRAA KLGEFAK +E+DN+K++IIP F +LA D+ DSVRLLAVEACV+IA +LP D EAL+MPTLR A+DKSWRVRYMVADK +LQKA+GPE++K DLVPA+ L+KD E+EV+ AA+HKVKEFCE L D +E IMS ILPC+K+LV D N HVKSALA VIMGL+P+LGKDNTIEHLLPLFL LKDE P+VRLNIISN+D VN+VIGI QLSQSLLPAI+ELAED KWRVRLAIIEYMPLLAGQLGV+FFDEKLN LCM+WLVDHVYAIREAA NLKKL+EKFG EWA T+IPKVLAM+ D NYLHRMTTLF IN + +V G +IT + +LPTV+ +A D VANVRFNVAK+LQKI ILD +++Q +KP L +L D DVDVKYFA EAL V
Sbjct: 1 MAAADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 585 The following BLAST results are available for this feature:
BLAST of TCONS_00005222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.