TCONS_00052658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052658
Unique NameTCONS_00052658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052658 ID=TCONS_00052658|Name=TCONS_00052658|organism=Clytia hemisphaerica|type=transcript|length=550bp
GAGAATGTTGAACAAGAAATCTAAAGAAGAAAAGatattcaagCAACTTT
TCGAGGATGGTTTGGAAATCCAGCGTGAACGTTTGCGAGAGTTGAAGAAA
TATGCTCATGAGCAACGAGAGAAGAATGATACCAAACAACGAAACGAAAT
TGAATCCATGGAAAACTATTATCGCGGACAGTTTTCTTTGCTTGCAGACA
CGATCGCTCAGGAGAAAAGTGAAATTCAAATCCGACAGAAAGCTCAGAAC
CAGCTTCTCCATAAAATGCGGAACGATATGCGAAAGAAGATGGAAGGTGA
TATTCAAACCATCCAAGATCAATTAATAAACGAGCAGGATACATTAAGTT
TTCGACAAATCGATGCTGATAACATGAGAAAAGAATTCAAATTAGCCACA
TATAAATCTACCAGATTTTAAAGAAATCTTATATTGTAAATAGTGTACAA
AAATAATTATActtaaattgagaaatatcGAAATAATCTTTGAACATTTC
TAAACCAACTTGTTAATGATTTCTAAATTTGCTTAAAAACAACCACGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_218:222413..224375-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052658 ID=TCONS_00052658|Name=TCONS_00052658|organism=Clytia hemisphaerica|type=transcript|length=1963bp|location=Sequence derived from alignment at scaffold_218:222413..224375- (Clytia hemisphaerica)
GAGAATGTTGAACAAGAAATCTAAAGAAGAAAAGGTAATGTGAATAAATC
TTTTTCGAATGTTCTAAATGTTTTTAATAATGTGGAATAGGTGAAAAACT
CCGCGTTTTCTTTTCGTTGCAATCAATATAATGACGCGCAGCGCTTTGCA
CATTATATGAAAGATGAGCTTGATATATACTGAATGATGTCTCTGTTTTC
GATACAAGAATTCGATCGTACTTAATTTCAAACTATTGTAGTCACTGAAG
TAAATGTCGTTTGTACACCAGTTAACTGGTGGTTGCTAAAACCATTTATT
TTTCCACTATATTCGAAAAACTAATTGTCACAAAACTACTTTTTCTCAAA
TATCATTTCGTTCTTTTTAGATATTCAAGCAACTTTTCGAGGATGGTTTG
GAAATCCAGCGTGAACGTTTGCGAGAGTTGAAGAAATATGCTCATGAGCA
ACGAGAGAAGAATGATACCAAACAACGAAACGAAATTGAATCCATGGAAA
ACTAGTATCCTTTTCAGAAAAATGATCTCAAGATTCAATAGACCTTATCG
GAGTTTTTGATATTTCTAAAACAGCGATGCATTGTGGGATTATTTCGGGG
GTGTTACAATAGAATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAA
TACCCCCGAAACAATCCCACGATGCATCGCTTTTTTAGAAAAATCAAAAA
CTCCGATAAGATCTATCACATTTTAAGCATGCTGATGTTCTTATCTTTAA
AAATCTCTAAGACATAAAGTGAAAGTCCTCTCTTTTGACCTTATTTGAAA
AGCGCGGCAATGCACTGCTACAAAGCAACGCCGACGAATCGGCTTTATAA
GTTCTCTATATTGTTGAATATTCGAGAGGGTTCAAGTGGATTCAAGGATT
ATTTTTGTTAACTTTTAGAAAATACTGTGCTTTGTACTTCTGTACTGTTA
AGTGCTTATGTCGAGAATTTAACCGATTTTCCGATTTTCCTTGACCGTCT
TTTAACACTAACAGTTATCGCGGACAGTTTTCTTTGCTTGCAGACACGAT
CGCTCAGGAGAAAAGTGAAATTCAAATCCGACAGAAAGCTCAGAACCAGG
TGATTGTGTAATTTGTTTTTCTTTCAAATTGAAATTTAAGGATAACGTTC
GGGGAGTGGTGTCAAATCAGACAGACGCATGTGAAAGAAGTACCATCGAT
ATTTTAAACCCTCTACCGCGAGAATACTCGAAGTTGGCAGCGAGCGTGTT
TAAACGGAGGGAAAATTAAACCTGGAAGATTAATTGTGGTTTAATGCATC
GAGTTTATTTTCATNAGTACCATCGATATTTTAAACCCTCTACCGCGAGA
ATACTCGAAGTTGGCAGCGAGCGTGTTTAAACGGAGGGAAAATTGAACCT
GGAAGATTAATTGTGATTTAATGCATCGAGTTTATTTTCAAGGGTCCGTG
CTTCAACAACTGAAAAAGTTGAAGCCCTATCAAGGAGACAAATTTATGAT
CGCTACATGTGCTCTCCTATTCAAGCTATTTTGACGTAATGTTTTATACG
GAAGCACCCTGAATAGGCCGGACGTTTCCCACTAATAGTTTTATTGATTA
AACTCAAAATTATTTTGTGCACTTCCTTTAAAACATTACATCATATTTAA
TCTTTTATTTTTACAGCTTCTCCATAAAATGCGGAACGATATGCGAAAGA
AGATGGAAGGTGATATTCAAACCATCCAAGATCAATTAATAAACGAGCAG
GATACATTAAGTTTTCGACAAATCGATGCTGATAACATGAGAAAAGAATT
CAAATTAGCCACATATAAATCTACCAGATTTTAAAGAAATCTTATATTGT
AAATAGTGTACAAAAATAATTATACTTAAATTGAGAAATATCGAAATAAT
CTTTGAACATTTCTAAACCAACTTGTTAATGATTTCTAAATTTGCTTAAA
AACAACCACGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033273XLOC_033273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052658-exon-scaffold_218-1575043694:224342..224375TCONS_00052658-exon-scaffold_218-1575043694:224342..224375Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1575043694:223872..224005TCONS_00052658-exon-scaffold_218-1575043694:223872..224005Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1575043694:223277..223361TCONS_00052658-exon-scaffold_218-1575043694:223277..223361Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1575043694:222413..222709TCONS_00052658-exon-scaffold_218-1575043694:222413..222709Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1510915933:224342..224375TCONS_00052658-exon-scaffold_218-1510915933:224342..224375Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1510915933:223872..224005TCONS_00052658-exon-scaffold_218-1510915933:223872..224005Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1510915933:223277..223361TCONS_00052658-exon-scaffold_218-1510915933:223277..223361Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1510915933:222413..222709TCONS_00052658-exon-scaffold_218-1510915933:222413..222709Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1491911889:224342..224375TCONS_00052658-exon-scaffold_218-1491911889:224342..224375Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1491911889:223872..224005TCONS_00052658-exon-scaffold_218-1491911889:223872..224005Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1491911889:223277..223361TCONS_00052658-exon-scaffold_218-1491911889:223277..223361Clytia hemisphaericaexon
TCONS_00052658-exon-scaffold_218-1491911889:222413..222709TCONS_00052658-exon-scaffold_218-1491911889:222413..222709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:222413..224375 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.42448	10.5541	5.63968	2.48335	5.24326	1.94168	8.60813	6.43519	0.422963	0	4.4492	3.58032	2.66537	5.35719	0.378064	3.90989	4.43951	5.27946	6.27432	4.63789	8.65268	3.80465	11.458	7.0461	2.32339	9.99698	4.76252	4.49554	8.08547	5.4435
Blast
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BLAST of TCONS_00052658 vs. Swiss-Prot (Human)
Match: CEP95 (Centrosomal protein of 95 kDa OS=Homo sapiens GN=CEP95 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.115e-34
Identity = 60/138 (43.48%), Postives = 104/138 (75.36%), Query Frame = 2 
Query:    2 RMLNKKSKEEKIFKQLFEDGLEIQRERLRELKKYAHEQREKNDTKQRNEIESMENYYRGQFSLLADTIAQEKSEIQIRQKAQNQLLHKMRNDMRKKMEGDIQTIQDQLINEQDTLSFRQIDADNMRKEFKLATYKSTR 415
            +M+  +++EE IFK+LFE+GL IQ++RLR+L+ YA E+R++   + ++E++SMENYY+ QFSLLA+ I+QE  E++ R+K+Q Q LHK++ ++R KME +IQ +QD +    D + FR+++A+  R   +LA+++ ++
Sbjct:  680 KMMRMRTREEMIFKKLFEEGLNIQKQRLRDLRNYAKEKRDEQRRRHQDELDSMENYYKDQFSLLAEAISQEHQELKAREKSQAQTLHKVKRELRSKMEKEIQQLQDMITQNDDDVFFRELEAERFRSRLQLASFQYSK 817
The following BLAST results are available for this feature:
BLAST of TCONS_00052658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CEP957.115e-3443.48Centrosomal protein of 95 kDa OS=Homo sapiens GN=C... [more]
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