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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052523 ID=TCONS_00052523|Name=TCONS_00052523|organism=Clytia hemisphaerica|type=transcript|length=540bp
NNCCGTTTCGTGTCTCGGTGACTTATTTTATTGTCCATTTAAAGTCCCTG
TTACAGCCGCACCAAATTTATCAGAAGTTCCATCATACGGCTGACATCGA
GTTTGACATCAAATCCCTAAAGTGTCATCGTCCAAAGTCTGAAGGTGATG
AAGTTGACGCTATTGTGTTGGCCTACTTGAAACAGATGGTCAAGgACCAC
AACCAGAAATGTATTAAGGATTTGATTACAGATAGCATGTTGCACTGTTT
TAAAGCGGCAAATCCTGCAATGTCCGACGAAGAAGCAACCGCTCATTGTG
AAAGCAATGAACAAAAACCATGCCGTTTATTTTGTGCTGACTCGAGAATC
ATGGCTTCCTTTTCAAACGCAAGTCGATACCTATACGAGGATGGCCTACT
TCACATGAACGACTCGACCGACGAGATAGCAAGGCCAGCAGTGGAACCAC
CTAAAACTTCAATATCAAAAGCGGCTGATAAAATTGCAAAAGTGATGAAC
CAACTCGATCACAGATTGTATCGTGGCAACATCTacgcaa Run BLAST on NCBI protein sequence of TCONS_00052523-protein >TCONS_00052523-protein ID=TCONS_00052523-protein|Name=TCONS_00052523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
PFRVSVTYFIVHLKSLLQPHQIYQKFHHTADIEFDIKSLKCHRPKSEGDE
VDAIVLAYLKQMVKDHNQKCIKDLITDSMLHCFKAANPAMSDEEATAHCE
SNEQKPCRLFCADSRIMASFSNASRYLYEDGLLHMNDSTDEIARPAVEPP
KTSISKAADKIAKVMNQLDHRLYRGNIYA Run BLAST on NCBI transcript from alignment at scaffold_217:277832..278682+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052523 ID=TCONS_00052523|Name=TCONS_00052523|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at scaffold_217:277832..278682+ (Clytia hemisphaerica)
NNCCGTTTCGTGTCTCGGTGACTTATTTTATTGTCCATTTAAAGTCCCTG
TTACAGCCGCACCAAATTTATCAGAAGTTCCATCATACGGCTGACATCGA
GTTTGACATCAAATCCCTAAAGTGTCATCGTCCAAAGTCTGAAGGTGATG
AAGTTGACGCTATTGTGTTGGCCTACTTGAAACAGATGGTCAAGGTATGA
GTGGTTTGTCTTAATTTTCTAAATTACTGGTTGATGTTGTTCTGAGTTGA
TTTTCTAGTTGAATCAAgtcccagttggcacacaacgttgtttcaacgtt
catctaacgttatatggaagTTGTGAACGTTATAAAAGCGtggaaacaac
gttgtgtgccagctggtgtAAGATATATTCGAGGTTCAAGCACTTAGAGA
TGCCTCAAAATTAGACGctatttatcaattttattttattttatctatcc
TAAATTTACACTACAACACTTTAACATTTTCAACAagctgttcttttttt
ctcaggACCACAACCAGAAATGTATTAAGGATTTGATTACAGATAGCATG
TTGCACTGTTTTAAAGCGGCAAATCCTGCAATGTCCGACGAAGAAGCAAC
CGCTCATTGTGAAAGCAATGAACAAAAACCATGCCGTTTATTTTGTGCTG
ACTCGAGAATCATGGCTTCCTTTTCAAACGCAAGTCGATACCTATACGAG
GATGGCCTACTTCACATGAACGACTCGACCGACGAGATAGCAAGGCCAGC
AGTGGAACCACCTAAAACTTCAATATCAAAAGCGGCTGATAAAATTGCAA
AAGTGATGAACCAACTCGATCACAGATTGTATCGTGGCAACATCTacgca
a Coding sequence (CDS) from alignment at scaffold_217:277832..278682+ >TCONS_00052523 ID=TCONS_00052523|Name=TCONS_00052523|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_217:277832..278682+ (Clytia hemisphaerica)
CCGTTTCGTGTCTCGGTGACTTATTTTATTGTCCATTTAAAGTCCCTGTT
ACAGCCGCACCAAATTTATCAGAAGTTCCATCATACGGCTGACATCGAGT
TTGACATCAAATCCCTAAAGTGTCATCGTCCAAAGTCTGAAGGTGATGAA
GTTGACGCTATTGTGTTGGCCTACTTGAAACAGATGGTCAAGgACCACAA
CCAGAAATGTATTAAGGATTTGATTACAGATAGCATGTTGCACTGTTTTA
AAGCGGCAAATCCTGCAATGTCCGACGAAGAAGCAACCGCTCATTGTGAA
AGCAATGAACAAAAACCATGCCGTTTATTTTGTGCTGACTCGAGAATCAT
GGCTTCCTTTTCAAACGCAAGTCGATACCTATACGAGGATGGCCTACTTC
ACATGAACGACTCGACCGACGAGATAGCAAGGCCAGCAGTGGAACCACCT
AAAACTTCAATATCAAAAGCGGCTGATAAAATTGCAAAAGTGATGAACCA
ACTCGATCACAGATTGTATCGTGGCAACATCTacgcaCCGTTTCGTGTCT
CGGTGACTTATTTTATTGTCCATTTAAAGTCCCTGTTACAGCCGCACCAA
ATTTATCAGAAGTTCCATCATACGGCTGACATCGAGTTTGACATCAAATC
CCTAAAGTGTCATCGTCCAAAGTCTGAAGGTGATGAAGTTGACGCTATTG
TGTTGGCCTACTTGAAACAGATGGTCAAGgACCACAACCAGAAATGTATT
AAGGATTTGATTACAGATAGCATGTTGCACTGTTTTAAAGCGGCAAATCC
TGCAATGTCCGACGAAGAAGCAACCGCTCATTGTGAAAGCAATGAACAAA
AACCATGCCGTTTATTTTGTGCTGACTCGAGAATCATGGCTTCCTTTTCA
AACGCAAGTCGATACCTATACGAGGATGGCCTACTTCACATGAACGACTC
GACCGACGAGATAGCAAGGCCAGCAGTGGAACCACCTAAAACTTCAATAT
CAAAAGCGGCTGATAAAATTGCAAAAGTGATGAACCAACTCGATCACAGA
TTGTATCGTGGCAACATCTacgca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052523-exon-scaffold_217-1491911889:277832..278025 | TCONS_00052523-exon-scaffold_217-1491911889:277832..278025 | Clytia hemisphaerica | exon |
| TCONS_00052523-exon-scaffold_217-1510915933:277832..278025 | TCONS_00052523-exon-scaffold_217-1510915933:277832..278025 | Clytia hemisphaerica | exon |
| TCONS_00052523-exon-scaffold_217-1575043694:277832..278025 | TCONS_00052523-exon-scaffold_217-1575043694:277832..278025 | Clytia hemisphaerica | exon |
| TCONS_00052523-exon-scaffold_217-1491911889:278337..278682 | TCONS_00052523-exon-scaffold_217-1491911889:278337..278682 | Clytia hemisphaerica | exon |
| TCONS_00052523-exon-scaffold_217-1510915933:278337..278682 | TCONS_00052523-exon-scaffold_217-1510915933:278337..278682 | Clytia hemisphaerica | exon |
| TCONS_00052523-exon-scaffold_217-1575043694:278337..278682 | TCONS_00052523-exon-scaffold_217-1575043694:278337..278682 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:277832..278682 + |
Blast
The following BLAST results are available for this feature:
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