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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005253 ID=TCONS_00005253|Name=TCONS_00005253|organism=Clytia hemisphaerica|type=transcript|length=977bp
gacagggtcaactTTTCAAACTCTCCGTCATAGCACCCTCCGGAGTACCC
cacatttgtttttctttgaatacAAGCACGCTGTCATTGCAAAAGCAGAT
ACATGTTTTGCACTGAAAAAAGAGACACTGAGACAGTCGTTTACTTTCTT
CTCTTTCCAGTCCAAACAACTGATAGCAATTCAAGGACTCAGCCACCGGC
AAATTACGAAGAATTACTTgctttttccaaggaaaattcaacatatacac
cgttggaaaaaGTTGAATCTCATTATGAAGTATAAACATATCAAATGGAT
AGATCCTTGGTTGATAACTTCAATGAGTTTACAGATTCAATTAGTTAATG
AAGGACTTTAGCTTCAGAAGGAACCTCTCATGCTATGTTTTTTCCACCCC
TTAACCATTTCCGTGCCACTGTCGGATATATCCACTCCATTTGCTTTTGT
CGAATATATCTGAcATTGCAGAATTCTATTCCTTTGCCTCCTGGTCGGAT
GTATTCAACAGGCTTAATTCCGACATGCATTAAATCTCTCCTTCTCCAAA
CCTCAAACTTGGAAATCTTCCATAAATAAGGGCTTTATTTATTAACCAAA
GGCACTAGGATGctaaatttcagtcaaatttgaccattttcaaaGCATCA
TTATGGGGCTAAATGCTGGTTCCATGGCCCCGTAGTGCCAATATTTTTTG
GAAACAAATTGTCTATATACTTAAAATCTATTTCTTGTAAATAAGTTTGT
TGCTAAtagaatttacataatttataaTGCCGCGGCAAACAGATCAAGGT
GTGAAAAAAGGTCTTGGCAAGGAAAGGGTTTTAAAAAGAGAGTTTGCCGC
TCTTATCACCCGCTATGTAAATGAGTTAATTGCATTTTATATGTATGATA
TAATTTAGTTCGTAGAATTTATAATAATGTTTTTCATGTACCAGCACAGA
TCATTTCACTGAATAAATTTATTTCgc Run BLAST on NCBI protein sequence of TCONS_00005253-protein >TCONS_00005253-protein ID=TCONS_00005253-protein|Name=TCONS_00005253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
TGSTFQTLRHSTLRSTPHLFFFEYKHAVIAKADTCFALKKETLRQSFTFF
SFQSKQLIAIQGLSHRQITKNYLLFPRKIQHIHRWKKLNLIMKYKHIKWI
DPWLITSMSLQIQLVNEGL Run BLAST on NCBI transcript from alignment at sc0000051:470766..471742 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005253 ID=TCONS_00005253|Name=TCONS_00005253|organism=Clytia hemisphaerica|type=transcript|length=977bp|location=Sequence derived from alignment at sc0000051:470766..471742 (Clytia hemisphaerica)
gcGAAATAAATTTATTCAGTGAAATGATCTGTGCTGGTACATGAAAAACA
TTATTATAAATTCTACGAACTAAATTATATCATACATATAAAATGCAATT
AACTCATTTACATAGCGGGTGATAAGAGCGGCAAACTCTCTTTTTAAAAC
CCTTTCCTTGCCAAGACCTTTTTTCACACCTTGATCTGTTTGCCGCGGCA
ttataaattatgtaaattctaTTAGCAACAAACTTATTTACAAGAAATAG
ATTTTAAGTATATAGACAATTTGTTTCCAAAAAATATTGGCACTACGGGG
CCATGGAACCAGCATTTAGCCCCATAATGATGCtttgaaaatggtcaaat
ttgactgaaatttagCATCCTAGTGCCTTTGGTTAATAAATAAAGCCCTT
ATTTATGGAAGATTTCCAAGTTTGAGGTTTGGAGAAGGAGAGATTTAATG
CATGTCGGAATTAAGCCTGTTGAATACATCCGACCAGGAGGCAAAGGAAT
AGAATTCTGCAATgTCAGATATATTCGACAAAAGCAAATGGAGTGGATAT
ATCCGACAGTGGCACGGAAATGGTTAAGGGGTGGAAAAAACATAGCATGA
GAGGTTCCTTCTGAAGCTAAAGTCCTTCATTAACTAATTGAATCTGTAAA
CTCATTGAAGTTATCAACCAAGGATCTATCCATTTGATATGTTTATACTT
CATAATGAGATTCAACtttttccaacggtgtatatgttgaattttccttg
gaaaaagcAAGTAATTCTTCGTAATTTGCCGGTGGCTGAGTCCTTGAATT
GCTATCAGTTGTTTGGACTGGAAAGAGAAGAAAGTAAACGACTGTCTCAG
TGTCTCTTTTTTCAGTGCAAAACATGTATCTGCTTTTGCAATGACAGCGT
GCTTgtattcaaagaaaaacaaatgtgGGGTACTCCGGAGGGTGCTATGA
CGGAGAGTTTGAAAagttgaccctgtc Coding sequence (CDS) from alignment at sc0000051:470766..471742 >TCONS_00005253 ID=TCONS_00005253|Name=TCONS_00005253|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000051:470766..471742 (Clytia hemisphaerica)
CTAAAGTCCTTCATTAACTAATTGAATCTGTAAACTCATTGAAGTTATCA
ACCAAGGATCTATCCATTTGATATGTTTATACTTCATAATGAGATTCAAC
tttttccaacggtgtatatgttgaattttccttggaaaaagcAAGTAATT
CTTCGTAATTTGCCGGTGGCTGAGTCCTTGAATTGCTATCAGTTGTTTGG
ACTGGAAAGAGAAGAAAGTAAACGACTGTCTCAGTGTCTCTTTTTTCAGT
GCAAAACATGTATCTGCTTTTGCAATGACAGCGTGCTTgtattcaaagaa
aaacaaatgtgGGGTACTCCGGAGGGTGCTATGACGGAGAGTTTGAAAag
ttgaccctgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005253-exon-sc0000051-1491911889:470766..471742 | TCONS_00005253-exon-sc0000051-1491911889:470766..471742 | Clytia hemisphaerica | exon |
| TCONS_00005253-exon-sc0000051-1510915933:470766..471742 | TCONS_00005253-exon-sc0000051-1510915933:470766..471742 | Clytia hemisphaerica | exon |
| TCONS_00005253-exon-sc0000051-1575043694:470766..471742 | TCONS_00005253-exon-sc0000051-1575043694:470766..471742 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000051 | supercontig | sc0000051:470766..471742 . |
Blast
The following BLAST results are available for this feature:
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