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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052521 ID=TCONS_00052521|Name=TCONS_00052521|organism=Clytia hemisphaerica|type=transcript|length=1235bp
GTTCACTGATACACAACCTACCGAGGTAAGAAGTCAGCCAGAAACATTAG
AGAAACTCAAAGATATCAAACTTGATTATCTGATAACAAATAAGATGGTT
TGGAAGCTATTGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTGACGC
AAGTTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGACAATTG
GACAAAACGGTGAAGTCACTCATTATGAGAAAATTCATGACAACAACAAT
GAAAATATCTATGCTCCACAAAAAAGAGCATTACCAGCCCACAAATCTTT
TCATTATGCTTCAATGGTGAATATGGTGAGAAGATCAAAACGACATAATA
TTGTCGATAGTTGCACTATCTCTACAATCAACCAAGATATTTTCGTTAAC
AAGTGCAATGCAACGATCTATAACTTGAAGGTTTGCTCTGGTAGTTGCCC
AGCAAATGAAACAGATTACTTTGGATGTCGGATGTCAGGCTCACGAGAGT
TAGAGGTCGATCTCCATTGTCCTGATTCAACCACAATCAAACCGAGTATT
ATGGTCAAAGATGCAAGTCATTGCGAATgcaagaaattgccaaaattctA
AAGTTGTGACGCACTCTATATTACAACCAAATTATCATTgtattaaaata
tcaaaaaaaattattgtaaaatttAATGTATTTTAACGTTGAAGCTTAAC
TTTTATCATCTGATGTATTCACTCAGAAACAAAAAGtcacttttgaaaat
tctaaaatccCTTGGCAAAACGTTGTAAAAATTAAGAGAGACTTTTGGAA
CTGAAAGTTATCCCTTCTCACGGACCCACTGGAACCCTTCCCAatggaaa
aattttccaaaaaatcattctggtgggaaaatatcctccaatttttgtcc
ccactaataataatcaaataaaaaaatcctcactgcaaaatagtATGCTA
TTTTTTTCTATCCCAAATGAATTGTCCGACTTGAAAACAAatgaattcaa
atccccagccataaaaaatatggaagtTTCGTTCCggtatttttatcccc
actggctgaaaaaatcctaccaggtctgtgagaagggggtgtttaaagTT
CCGTGCCACACATATGGATGTCAACCATCAGCCAATGTCTTACGCATCGG
TGACTGAGGAATAGTTCAGATGAAATTTACGTATTGTAATATATAAAGCA
AAGATAAATAGCGATAAAAAAACGTAGAATGAGTA Run BLAST on NCBI protein sequence of TCONS_00052521-protein >TCONS_00052521-protein ID=TCONS_00052521-protein|Name=TCONS_00052521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
FTDTQPTEVRSQPETLEKLKDIKLDYLITNKMVWKLLITVALIFVTFSDA
SFEIHASHGNLEIKTIGQNGEVTHYEKIHDNNNENIYAPQKRALPAHKSF
HYASMVNMVRRSKRHNIVDSCTISTINQDIFVNKCNATIYNLKVCSGSCP
ANETDYFGCRMSGSRELEVDLHCPDSTTIKPSIMVKDASHCECKKLPKF Run BLAST on NCBI transcript from alignment at scaffold_217:190777..196187+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052521 ID=TCONS_00052521|Name=TCONS_00052521|organism=Clytia hemisphaerica|type=transcript|length=5411bp|location=Sequence derived from alignment at scaffold_217:190777..196187+ (Clytia hemisphaerica)
GTTCACTGATACACAACCTACCGAGGTAAGAAGTCAGCCAGAAACATTAG
AGAAACTCAAAGATATCAAACTTGATTATCTGATAACAAATAAGATGGTT
TGGAAGCTATTGGTAAGTATCAACTCTGCGTCACATTTACATTTTAggat
ctacacgtttttttataagattgtacaatttttttttaaaaaacgtgtac
attgaatttcaaacatttcaaaGTTTGTGCCTATGATCATACATCTCTTT
CCAAGTGGCCCgatgaaatctttttttacgTAATTTTCAGCATTTCTTTC
AGTGTAAATGACGAGAATCGGTTTcagtttgaaaatggaaataaaatttc
agggtattATTAATTTTTCACAGGAGAAAAGTAGAGAAATTTTGCCTGAA
TTTTGATTAATTGATTATGATTTAGAATtatttaagaatgttttttaaCG
CTCAAAATACACGCTTCTCGAGATAAATCAACAGCATGCcgggcctcgtt
ttcaaatgaaataattACTTCAAACAGCAACATTTACGTATGTAATATGT
TTCCTAAAAAACCTTTTTCGATTTTGACACAAAACCGTAGACACTTGCAA
ACATTAATCGTATCTGACGATGTTGAAGTATCGTAGAAGAAAGTCTTTGA
GAACGAGTAGGCTCGCAATTATTTCATACAtttcgagaagagtgtattat
tGCTAAATTTTAAGAATCACGAGACTCATTCCTATCTATGTAACCTGATA
AGAgctggtcataattttcttacggagctttagcgtggtgggcagataaa
acaatcacaatctgatctcaggttaaatTTATGTACTTATTACTAACTTA
CTTAAACAAAAACTATCTGTTTGAATCTTGTTTAGATTACCGTTGCTTTA
ATTTTTGTGACGTTTTCTGACGCAAGTTTTGAGATTCATGCATCTCATGG
TAACCTTGAAATCAAGACAATTGGACAAAACGGTGAAGTCACTCATTATG
AGAAAATTCATGACAACAACAATGAAAATGTACGTACATGAATTTATTAA
TTTATCCTAGCCCGGGGGATTAGACgggagtctacttctggctgaacttt
gctttctaataatttttgatgacgctagtccagtgaagtagactaggagc
atctGACGAGGAtgccattttgagaaaaaaatacttaaaatccaaataac
aaaaaagctgcttgaagttgaaaaatataattaagaatgagaaacaaaca
tcaataatagATTTTGAattccttattttcaaataaaaacattgcttcat
tctttttttcctGGCGTAAGGGCGGTgcaagcaaaagcatattaccgggt
cacttaatcgcgccatccagtctataaaaaaactttaagtggACCCTTGG
CTAGGGTgcgtgggtttaccaactgacgggtatgtgcggcggatAAATTA
GCTTTTAAAATCGTCAATCATACTCTTACAGtgtatttttctcaaatctt
taaatctcaaaattttctgcAAAGATTTGCTGAAAATTCCACCCTTACTG
TGTATCGTTGCTGCTACAAAACATTAATAATATGTCCATTTAACGTTCAA
CCAACGTTGTGCTCCAGTTGGAGTTCTCTTATTCTAGAATACATAGGATA
CAAATTCACTACACTGAAATGAGTCATCCTGAAATAAAGTTAAATATGTC
GAATACTCTATAAAGATTAGAAATACGATATCAATAAACTTTGaaagttg
acactctctaattctaTAAAGCtcaccaagccaaacgctgtgactcaaat
ttgtttatcaggccttttgcccccctactacaggccttagaacaatcgct
cattttgctatccgatcacaaGCTTAACAAATatcaaacaagacgacttg
aagtcgaaaatttcgcctagaacttaaactacataggaaaaacaagaagt
taagattgaagccaatttgaaatcttctttacatcgagccttgatgaaac
aattttacaagaacaacgaggcttaaaatcgctaaaaaaaaaaagagaga
ccaatttaagaacaattgttgtttaatttttaagaactaataaacaaagg
taatatcaccgtctattaaaagttattgatttgattcttataaagtaaat
gcttataagaaaaatgattaTGCTCATAATGtgtgccgtcccttgtttac
tttgtaagaactaattaccgaaaggtatagcaccgtctatcaagagttat
tgatttgattcttataaagtatatgcttataagaaaaatgaatatgctca
tattgtgcgccgtcccttgtttactttgtaagagctaattaccgaaaggt
atatcaccgtctatcaagatgtattgatttgattcttataaagtatatgc
ttataagaaaactatataagatcatattgtgcgccatcccttatttactt
tgtaagaactaattaccgaaaggtatatcaccgtctatcaagagttattg
atttgatttttataaagtatatgcttataagaaaaataaatatgctcata
ttgtgcgccattatttgtttactttgtaagaactaattaccgaaaggtat
atcaccgtctatcaagagttattgatttgattcttataaagtatatgctt
ataagaaaaataaatatgcacatATTGTGCTCcattctttgtttactttg
taagaactaattaccgaaaggtatatcaccgtctatcaagagttattgat
tttattcttataaagtatatgcttataagaaaaaaaagtttactttgtaa
gaactaattactgaaaggtatattaccgtctatcaagagttattgatttg
attcttataaagtatatgcttataagaaaataaagaaaaatacaaactgt
ggagctaaagacacaaagatatatgacgtaatccaaagaaaacccgcaaa
aatcgtccgtggttatacgagcgtgtaatttgtaaattaaatttactttc
gctatgcgaaattaacaaGTCACTATAATTCAACATTTTATAATTTAGAA
GCCCTCGTCAAGTTCCTTGAACTTTCCTCGCTATACAGTACAAAGGCTaa
tctttcaaatcaaatttggaaatttttggaGACCAACTTTTCCGTAAATA
GTTTATACAATGTCAATTAACTAATTTCATCATGATTTGTTTTCTTACAT
AGATCTATGCTCCACAAAAAAGAGCATTACCAGCCCACAAATCTTTTCAT
TATGCTTCAATGGTGAATATGGTGAGAAGATCAAAACGACATAATATTGT
CGATAGTTGCACTATCTCTACAATCAACCAAGATATTTTCGTTAACAAGT
GCAATGCAACGATCTATAACTTGAAGGTGGGTTGCTTCCTTGTGAAGCAA
ATGATACACCctatctcacagccccggtggagctttttcccacagtgggg
ataaagatttatattgaaatctcaatgggaaTGAAAATTATGTTGTTCCA
AGGCTAAAATATCCAGTGGAATGGTTTTAAAgtgcaattttaaaacattG
TCGAAATTCGAAAGAGAATgaaatcaatttcaatttcccAGTAAAAGTGA
AATCCTAGAGTATTTTAAAGTTTTGCCAAATTTGCCATCAGTGGTTCTGG
GAACCAAGCGAGTCTGTGCCATTGAGAATTCATTGCTCATTTAAGACATC
CCTGTTACCTGGTGAAAATTGGGGTGAATAAAAGGCACTGGCAGATTTAA
GACAATacatagagcaagtacgtcggaaacatgcgaaggagtgcaacgct
cgttaaaaaaatgaaattaccaTTAATCAAATCTCTTCATCTGATAAATT
CGACgaggtctaaaaccgcctatgaaAGGAGTGCTAAATGTCAATAGGGT
TGAAACATTTTTGGTTTTGATGGATTGGGATTCAcaaaatttagcttttt
ataactaaaaaaagttagttgctgattttttttttcaacttggATGAGAA
CTGCGATTCTCCTATGTGGTGGATTCATAACTTTTACCGATTCTTTCATG
GTCACACCAAGTTTTGAAACAGGGTTGTTTAGCTTCCTTGgaaattatta
atttttgaaacatccccttttcacagacccggtaggattcttTTAGCCGA
TGAGGATAAAAATTACGGACTTGGGGATTGATATTATTTATGGCAggaga
tttcaatttttttgtcttcaagtcagaaaattcagtggggatgggaaaaa
tgataaaaattttgcagtgagggttggtttatttcattattttaagtggg
gagaaaaattggagtatgattttccactggggacgataatttggctaatt
tttccagtgggaagggatcccagtgggtctgtgaaaagggagTGTTTTGA
ATATAGCAGTTGCAAAGACGTAGAGGAGGGCACCACTTCTTTCCCTGGAT
TTTTCAACTTATCTTGACACTTTTCTTAGTTACtgcccagctgacacaca
acgttggtTCGACGCCCacctaatgttcacaacgtctatataacgttaga
tgaacgttgaaacaacgttgtgtgccagctgggtgaaCATAATTTTTCAT
CACTAGGTTTGCTCTGGTAGTTGCCCAGCAAATGAAACAGATTACTTTGG
ATGTCGGATGTCAGGCTCACGAGAGTTAGAGGTCGATCTCCATTGTCCTG
ATTCAACCACAATCAAACCGAGTATTATGGTCAAAGATGCAAGTCATTGC
GAATgcaagaaattgccaaaattctAAAGTTGTGACGCACTCTATATTAC
AACCAAATTATCATTgtattaaaatatcaaaaaaaattattgtaaaattt
AATGTATTTTAACGTTGAAGCTTAACTTTTATCATCTGATGTATTCACTC
AGAAACAAAAAGtcacttttgaaaattctaaaatccCTTGGCAAAACGTT
GTAAAAATTAAGAGAGACTTTTGGAACTGAAAGTTATCCCTTCTCACGGA
CCCACTGGAACCCTTCCCAatggaaaaattttccaaaaaatcattctggt
gggaaaatatcctccaatttttgtccccactaataataatcaaataaaaa
aatcctcactgcaaaatagtATGCTATTTTTTTCTATCCCAAATGAATTG
TCCGACTTGAAAACAAatgaattcaaatccccagccataaaaaatatgga
agtTTCGTTCCggtatttttatccccactggctgaaaaaatcctaccagg
tctgtgagaagggggtgtttaaagTTCCGTGCCACACATATGGATGTCAA
CCATCAGCCAATGTCTTACGCATCGGTGACTGAGGAATAGTTCAGATGAA
ATTTACGTATTGTAATATATAAAGCAAAGATAAATAGCGATAAAAAAACG
TAGAATGAGTA Coding sequence (CDS) from alignment at scaffold_217:190777..196187+ >TCONS_00052521 ID=TCONS_00052521|Name=TCONS_00052521|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_217:190777..196187+ (Clytia hemisphaerica)
TTCACTGATACACAACCTACCGAGGTAAGAAGTCAGCCAGAAACATTAGA
GAAACTCAAAGATATCAAACTTGATTATCTGATAACAAATAAGATGGTTT
GGAAGCTATTGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTGACGCA
AGTTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGACAATTGG
ACAAAACGGTGAAGTCACTCATTATGAGAAAATTCATGACAACAACAATG
AAAATATCTATGCTCCACAAAAAAGAGCATTACCAGCCCACAAATCTTTT
CATTATGCTTCAATGGTGAATATGGTGAGAAGATCAAAACGACATAATAT
TGTCGATAGTTGCACTATCTCTACAATCAACCAAGATATTTTCGTTAACA
AGTGCAATGCAACGATCTATAACTTGAAGGTTTGCTCTGGTAGTTGCCCA
GCAAATGAAACAGATTACTTTGGATGTCGGATGTCAGGCTCACGAGAGTT
AGAGGTCGATCTCCATTGTCCTGATTCAACCACAATCAAACCGAGTATTA
TGGTCAAAGATGCAAGTCATTGCGAATgcaagaaattgccaaaattctAA
TTCACTGATACACAACCTACCGAGGTAAGAAGTCAGCCAGAAACATTAGA
GAAACTCAAAGATATCAAACTTGATTATCTGATAACAAATAAGATGGTTT
GGAAGCTATTGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTGACGCA
AGTTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGACAATTGG
ACAAAACGGTGAAGTCACTCATTATGAGAAAATTCATGACAACAACAATG
AAAATATCTATGCTCCACAAAAAAGAGCATTACCAGCCCACAAATCTTTT
CATTATGCTTCAATGGTGAATATGGTGAGAAGATCAAAACGACATAATAT
TGTCGATAGTTGCACTATCTCTACAATCAACCAAGATATTTTCGTTAACA
AGTGCAATGCAACGATCTATAACTTGAAGGTTTGCTCTGGTAGTTGCCCA
GCAAATGAAACAGATTACTTTGGATGTCGGATGTCAGGCTCACGAGAGTT
AGAGGTCGATCTCCATTGTCCTGATTCAACCACAATCAAACCGAGTATTA
TGGTCAAAGATGCAAGTCATTGCGAATgcaagaaattgccaaaattctAA
TTCACTGATACACAACCTACCGAGGTAAGAAGTCAGCCAGAAACATTAGA
GAAACTCAAAGATATCAAACTTGATTATCTGATAACAAATAAGATGGTTT
GGAAGCTATTGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTGACGCA
AGTTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGACAATTGG
ACAAAACGGTGAAGTCACTCATTATGAGAAAATTCATGACAACAACAATG
AAAATATCTATGCTCCACAAAAAAGAGCATTACCAGCCCACAAATCTTTT
CATTATGCTTCAATGGTGAATATGGTGAGAAGATCAAAACGACATAATAT
TGTCGATAGTTGCACTATCTCTACAATCAACCAAGATATTTTCGTTAACA
AGTGCAATGCAACGATCTATAACTTGAAGGTTTGCTCTGGTAGTTGCCCA
GCAAATGAAACAGATTACTTTGGATGTCGGATGTCAGGCTCACGAGAGTT
AGAGGTCGATCTCCATTGTCCTGATTCAACCACAATCAAACCGAGTATTA
TGGTCAAAGATGCAAGTCATTGCGAATgcaagaaattgccaaaattctAA
TTCACTGATACACAACCTACCGAGGTAAGAAGTCAGCCAGAAACATTAGA
GAAACTCAAAGATATCAAACTTGATTATCTGATAACAAATAAGATGGTTT
GGAAGCTATTGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTGACGCA
AGTTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGACAATTGG
ACAAAACGGTGAAGTCACTCATTATGAGAAAATTCATGACAACAACAATG
AAAATATCTATGCTCCACAAAAAAGAGCATTACCAGCCCACAAATCTTTT
CATTATGCTTCAATGGTGAATATGGTGAGAAGATCAAAACGACATAATAT
TGTCGATAGTTGCACTATCTCTACAATCAACCAAGATATTTTCGTTAACA
AGTGCAATGCAACGATCTATAACTTGAAGGTTTGCTCTGGTAGTTGCCCA
GCAAATGAAACAGATTACTTTGGATGTCGGATGTCAGGCTCACGAGAGTT
AGAGGTCGATCTCCATTGTCCTGATTCAACCACAATCAAACCGAGTATTA
TGGTCAAAGATGCAAGTCATTGCGAATgcaagaaattgccaaaattctAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052521-exon-scaffold_217-1491911889:190777..190888 | TCONS_00052521-exon-scaffold_217-1491911889:190777..190888 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1510915933:190777..190888 | TCONS_00052521-exon-scaffold_217-1510915933:190777..190888 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1575043694:190777..190888 | TCONS_00052521-exon-scaffold_217-1575043694:190777..190888 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1491911889:191662..191805 | TCONS_00052521-exon-scaffold_217-1491911889:191662..191805 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1510915933:191662..191805 | TCONS_00052521-exon-scaffold_217-1510915933:191662..191805 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1575043694:191662..191805 | TCONS_00052521-exon-scaffold_217-1575043694:191662..191805 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1491911889:193979..194152 | TCONS_00052521-exon-scaffold_217-1491911889:193979..194152 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1510915933:193979..194152 | TCONS_00052521-exon-scaffold_217-1510915933:193979..194152 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1575043694:193979..194152 | TCONS_00052521-exon-scaffold_217-1575043694:193979..194152 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1491911889:195383..196187 | TCONS_00052521-exon-scaffold_217-1491911889:195383..196187 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1510915933:195383..196187 | TCONS_00052521-exon-scaffold_217-1510915933:195383..196187 | Clytia hemisphaerica | exon |
| TCONS_00052521-exon-scaffold_217-1575043694:195383..196187 | TCONS_00052521-exon-scaffold_217-1575043694:195383..196187 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:190777..196187 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006207 | Cys_knot_C |
Blast
The following BLAST results are available for this feature:
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