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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052502 ID=TCONS_00052502|Name=TCONS_00052502|organism=Clytia hemisphaerica|type=transcript|length=2103bp
NttaaaaaaaaaaattaggataAGATCTacaaaacaacatcaaaagtttg
aaataatatacaaatgctttaaaatttaaatataattgtttgaaaattta
tccCTTTCAAACAAGAAAACGATTataacaatacaccttttcgaacattg
aagtataagcccgaaggactagaagtgaatctctaacctttctcaggcaa
gaaaaagtgaagccttaaaatatgcgtatttttgacgacggattgaattt
ggcaattcctttgttttcgagtgatatttcttttgaaatttagccgtaaa
ttttagtttcaatcagttatttgtgtaaaaaccaggcgggccGCTTAAGG
CCGAGCAACTTTGGCAGGATTTTGTtgacttcaaatcctaccaaggagtt
ATAATTCATTAGTTTCGAATAAGATCTCTGTTATAATTTGTGTAATTTGC
ACACGAAATATCAATTAACAAAACTAACTCTCTGATTGAACTAGATGTTA
ATATTCAAACGATCACATTTTATtcacttgatatttttcgtgtaaTATTT
TACAAGGAATCAAAGCAAAATAACAATTAGAAACCTGTGTATTTTCCATC
AAGTTGGAACATTTGAAAACCTCCATTTTGGGTCGGCCATTTTCACTAAA
TTAAAACTGCAACTGTACTTTGACCGTAGCTCAAAACTTTATACAAATTC
CTAataaataacaaacaaaaataaCCCAACTAACTAGTTAATTCAAAATC
TGCCGCAGTCAGTCGTATTCTTATGCTCGCAATAAATGAAATATACCAAA
TAAATTCAATATTTAGGAATTGCAATTAATCTAAACAATACTAAACAAGA
TTTATCGCAAAGCAGATTTCACGATCAGACAGGCTTAAAAAAGATCAGGC
ATTTCTCACTTGATTTCTTTCCAGAAATTAAGAAcaagaccaccctggat
ttttacactaAAAAAACGGACCACtctggatttttttattttccatacca
ccctggacgtcacacctcctcaacatagggaggacagactatttctggaa
tagcccagtGCGAATATCGATGTTGCCCAACACATATAAAAAGAGCCTCG
AATATTTTTTGCCATAAAATGTTAGAACTTGCTTGTGGTCATTCGGTGAC
TGAATCAAGTTGTCATAAATCGGGAAAATCTTAAATGAGCCATGTTTCAT
GAATCGTGTCCCCTGCGCATGCACAACAGTGGGATCAAAAGATGACACAG
ATTAGCCATGTAACAATAACGCAACTAATGATTTGAAGTAATTTACTGTA
GCTATCATATCAATAAACAAGATTTTTCCATCAAAAGAATCAAGGTTATC
TTTTTTAGAGGATGAATTTAGTTTCACAATAGCTCATATGCCAGCAAACG
AATCTTGTGGTTTTTGCCTAAAAGTAGCTTGAGTGTCTGTATTTTCTGAT
GGTGCTCTAGAAGAATCTCGAGCACCTAATTGGTTGTTCGGTACATTGCT
AGAACTTGGTAGCTGGTCTGTAGAGTTACGCGGCGTGTTTTCAGTAGGAA
GAGATCCCATGTTAGGTAAggtatttgttgttgttgttgttctgGTTGGA
GGAAGTGAGCCAGTCAGATCATCAAAAGGATGAACAGTTTGCTGTTGGTT
GTTAGAAAGAGATGGCGAGTCTGTGTTTGTGGATTGTCGCATTTGGTTGA
TGGAAAGTCGATTGATATCAGGCATTGCTGCATTGGTAATTTTTGGTGTT
TTATGATCCAATTCTGATGGATTGTCAGTTTGATAAATGCTTTGGTAGTT
TCTTGGCGATGAAGTATCTTGCATTGGATTGTCAGTTGTTGGTTGAGGTC
TTTGGTCTGGCGGTGCAAAGGTTCTTGGATGTTGGTTAGGTTGAGTATTA
GCTTTAGCTGATTGGTGTTGTTGAGGTCGTGGCTGTGTTGTATGGTATCC
AGTTGGATGTTCAGTGGTGTTTTGAGATCTTGGTGGAGTCGAGGGGTTAT
GGTCATCGATAGGGACTTCAGTATGTGGCGGACGTTCTCTATTAACTGGA
TCTAAAAATGAAGCAGGATGAGTTTTGATAGATGTTATTGGTGGAATATT
CTC Run BLAST on NCBI transcript from alignment at scaffold_216:57714..59849+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052502 ID=TCONS_00052502|Name=TCONS_00052502|organism=Clytia hemisphaerica|type=transcript|length=2136bp|location=Sequence derived from alignment at scaffold_216:57714..59849+ (Clytia hemisphaerica)
NttaaaaaaaaaaattaggataAGATCTacaaaacaacatcaaaagtttg
aaataatatacaaatgctttaaaatttaaatataattgtttgaaaattta
tccCTTTCAAACAAGAAAACGATTataacaatacaccttttcgaacattg
aagtataagcccgaaggactagaagtgaatctctaacctttctcaggcaa
gaaaaagtgaagccttaaaatatgcgtatttttgacgacggattgaattt
ggcaattcctttgttttcgagtgatatttcttttgaaatttagccgtaaa
ttttagtttcaatcagttatttgtgtaaaaaccaggcgggccGCTTAAGG
CCGAGCAACTTTGGCAGGATTTTGTtgacttcaaatcctaccaaggagtt
ATAATTCATTAGTTTCGAATAAGATCTCTGTTATAATTTGTGTAATTTGC
ACACGAAATATCAATTAACAAAACTAACTCTCTGATTGAACTAGATGTTA
ATATTCAAACGATCACATTTTATtcacttgatatttttcgtgtaaTATTT
TACAAGGAATCAAAGCAAAATAACAATTAGAAACCTGTGTATTTTCCATC
AAGTTGGAACATTTGAAAACCTCCATTTTGGGTCGGCCATTTTCACTAAA
TTAAAACTGCAACTGTACTTTGACCGTAGCTCAAAACTTTATACAAATTC
CTAataaataacaaacaaaaataaCCCAACTAACTAGTTAATTCAAAATC
TGCCGCAGTCAGTCGTATTCTTATGCTCGCAATAAATGAAATATACCAAA
TAAATTCAATATTTAGGAATTGCAATTAATCTAAACAATACTAAACAAGA
TTTATCGCAAAGCAGATTTCACGATCAGACAGGCTTAAAAAAGATCAGGC
ATTTCTCACTTGATTTCTTTCCAGAAATTAAGAAcaagaccaccctggat
ttttacactaAAAAAACGGACCACtctggatttttttattttccatacca
ccctggacgtcacacctcctcaacatagggaggacagactatttctggaa
tagcccagtGCGAATATCGATGTTGCCCAACACATATAAAAAGAGCCTCG
AATATTTTTTGCCATAAAATGTTAGAACTTGCTTGTGGTCATTCGGTGAC
TGAATCAAGTTGTCATAAATCGGGAAAATCTTAAATGAGCCATGTTTCAT
GAATCGTGTCCCCTGCGCATGCACAACAGTGGGATCAAAAGATGACACAG
ATTAGCCATGTAACAATAACGCAACTAATGATTTGAAGTAATTTACTGTA
GCTATCATATCAATAAACAAGATTTTTCCATCAAAAGAATCAAGGTTATC
TTTTTTAGAGGATGAATTTAGTTTCACAATAGCTCATATGCCAGCAAACG
AATCTTGTGGTTTTTGCCTAAAAGTAGCTTGAGTGTCTGTATTTTCTGAT
GGTGCTCTAGAAGAATCTCGAGCACCTAATTGGTTGTTCGGTACATTGCT
AGAACTTGGTAGCTGGTCTGTAGAGTTACGCGGCGTGTTTTCAGTAGGAA
GAGATCCCATGTTAGGTAAggtatttgttgttgttgttgttctgGTTGGA
GGAAGTGAGCCAGTCAGATCATCAAAAGGATGAACAGTTTGCTGTTGGTT
GTTAGAAAGAGATGGCGAGTCTGTGTTTGTGGATTGTCGCATTTGGTTGA
TGGAAAGTCGATTGATATCAGGCATTGCTGCATTGGTAATTTTTGGTGTT
TTATGATCCAATTCTGATGGATTGTCAGTTTGATAAATGCTTTGGTAGTT
TCTTGGCGATGAAGTATCTTGCATTGGATTGTCAGTTGTTGGTTGAGGTC
TTTGGTCTGGCGGTGCAAAGGTTCTTGGATGTTGGTTAGGTTGAGTATTA
GCTTTAGCTGATTGGTGTTGTTGAGGTCGTGGCTGTGTAGATTGGTATCC
AGCTGAATGAGGAGGCTGTGTTGTATGGTATCCAGTTGGATGTTCAGTGG
TGTTTTGAGATCTTGGTGGAGTCGAGGGGTTATGGTCATCGATAGGGACT
TCAGTATGTGGCGGACGTTCTCTATTAACTGGATCTAAAAATGAAGCAGG
ATGAGTTTTGATAGATGTTATTGGTGGAATATTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052502-exon-scaffold_216-1491911889:57714..59644 | TCONS_00052502-exon-scaffold_216-1491911889:57714..59644 | Clytia hemisphaerica | exon |
| TCONS_00052502-exon-scaffold_216-1510915933:57714..59644 | TCONS_00052502-exon-scaffold_216-1510915933:57714..59644 | Clytia hemisphaerica | exon |
| TCONS_00052502-exon-scaffold_216-1575043694:57714..59644 | TCONS_00052502-exon-scaffold_216-1575043694:57714..59644 | Clytia hemisphaerica | exon |
| TCONS_00052502-exon-scaffold_216-1491911889:59678..59849 | TCONS_00052502-exon-scaffold_216-1491911889:59678..59849 | Clytia hemisphaerica | exon |
| TCONS_00052502-exon-scaffold_216-1510915933:59678..59849 | TCONS_00052502-exon-scaffold_216-1510915933:59678..59849 | Clytia hemisphaerica | exon |
| TCONS_00052502-exon-scaffold_216-1575043694:59678..59849 | TCONS_00052502-exon-scaffold_216-1575043694:59678..59849 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_216 | supercontig | scaffold_216:57714..59849 + |
Blast
The following BLAST results are available for this feature:
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