TCONS_00052389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052389
Unique NameTCONS_00052389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052389 ID=TCONS_00052389|Name=TCONS_00052389|organism=Clytia hemisphaerica|type=transcript|length=2038bp
gtttttgaaaacccgcGATGCTTCTGATTgatcaagcgctgaaattctat
tgtaatgccACGTGGCCTAAGTAGgattcctacctaaccacggtacactt
ttcagcaaaagtacgacatctagccctttgggctttataaatctatgtcc
CCAATACCTTTTTATAGTAGAGAATAAGCAAGGtgaattttgaatcaaaa
tGGAACATCCGTTCAAACGCTCAGAAACAACAGACATCGCGATCAAAATT
CAAGATGAAACATTTTATCTCCATCAACAAATCTTATCTTTTTATTCAAC
AAAATTTCGTGATATTTTACATGAGGACAAACAACAAAATCACCATGGAG
ATGGACAGATTCAAGAGATTTCATTGGTTGTTGATGAGAAGGCAGAAGTT
GAAGACTGGATGAccttctttttgttgttttatccAGAACATTTTCATTT
GATAGACATCGATGTTATAGACGAAGAAAGAATTGACCGTTTGATTACAC
TTGGCCAGAAATACGATGCAGAATGGATTTCGCGGACTCTCGACTCTTAC
TTCACtcaaaaacaagatggcggattCGTAAACAAAGAAGATGAGGAAGA
GGCTATAGATTATGAGAATTGCGAAAGAAACATCAAAGgcaTGCTGATTG
GTTTCAAGTATAAATTCCACGAGTTGACATTAAAATTGATCAATTTCAAT
TATTGTCCAATCAATGAGCTCCAACGATTGGAAGGGTTTGACGATCTTCA
CGatgatttcaaaatcaaattagCCATGTGTCGAGTGACACAAGCAGTCG
ATACAAACCATGTCAAAACCACTTTGGAAATCTTTAACACTATGTTTCGG
CAGACAGAGGAAGGAATAAAGCAGACAAAGGATATAGAGAGCAGACCGTT
AGATGAACAACTTTTCAACGACAGACAAGATTCTGATATGGAGATTCCAA
CCAAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTACTAGGCTTCTAC
TCTGAGattttgagaacaGAATGGCAACAGGACCTTTCTTCAAGCATGGG
TTTAGGTGATTCGAAATCACCACTGTTTAGTGGTTCTTATGACAAAGCGA
CGGTTAAAATGTTTTTACATCTTATCTATGCAAGTCATCCTGCTGAACTA
ACAGgGAGCACAGATTTCGAGCAGCTCCTATCTTTATTGACACACTACGA
GATTAAATGGCCAATCAAACGAGCAGAAGAGTACCTCATCCAATCAAATC
ATTTcaacaaaaaagataaaagcACGATGTGGGGAATAGATAAAGCCGAA
AATCAGATTCAAGGGCTCCTTTTGGCAGACCAGTATGGACTCGAACGACT
CCAGTTAAACATTATTAAAAATATTGAGAAAGCAAGTTCACTTGCTGAct
ataaaagttttcaaaagctTACAGCCAGGTCAACTTATCTTGTTTTAAGA
CGATGCATTCAAGAAAGACCGAAGAAAATAGAAGATGGATCATTTTCTAA
TGAAGGAAAAGCTATTGTTAAATTTTTGGATAAATTCTATAGATAAACTG
ATGTTTAGACAATAGGTAATGTGCTTATCCTACATAAATGTTGGCATTGT
ATTTATCTTTTTGAGGAAAAGAATCAcaacaaatttcatttttgataaac
tcaatttttttttgtaagcataacgtttataagcatacttaggctcaaac
tcGGTAAAAAAATGAGCataatttaaagcttttaaagctgttttagctct
tagaccaaagattttcaCATGCGGcgccaaattacaaaaaaattgttatt
ttttgagccgaatcaattaaaaacttaaaaattcgaaatttctatGAACC
caatgaaaatcaacaaaacgaagtataagcatataaataagcataaatta
aggctgaaaatgagattttgctaagcatacaGAGCTACGACCCGATTTTc
tagtatgcttataaaaaagagtgtggTCAAACCATACTGTATGTAATATA
GAATAGTCAAAAACTTATTTTAAGTTTCGACTTCATTT
Run BLAST on NCBI

protein sequence of TCONS_00052389-protein

>TCONS_00052389-protein ID=TCONS_00052389-protein|Name=TCONS_00052389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MEHPFKRSETTDIAIKIQDETFYLHQQILSFYSTKFRDILHEDKQQNHHG
DGQIQEISLVVDEKAEVEDWMTFFLLFYPEHFHLIDIDVIDEERIDRLIT
LGQKYDAEWISRTLDSYFTQKQDGGFVNKEDEEEAIDYENCERNIKGMLI
GFKYKFHELTLKLINFNYCPINELQRLEGFDDLHDDFKIKLAMCRVTQAV
DTNHVKTTLEIFNTMFRQTEEGIKQTKDIESRPLDEQLFNDRQDSDMEIP
TKEGKTFSVHSKVLGFYSEILRTEWQQDLSSSMGLGDSKSPLFSGSYDKA
TVKMFLHLIYASHPAELTGSTDFEQLLSLLTHYEIKWPIKRAEEYLIQSN
HFNKKDKSTMWGIDKAENQIQGLLLADQYGLERLQLNIIKNIEKASSLAD
YKSFQKLTARSTYLVLRRCIQERPKKIEDGSFSNEGKAIVKFLDKFYR
Run BLAST on NCBI

transcript from alignment at scaffold_213:1107393..1115497-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052389 ID=TCONS_00052389|Name=TCONS_00052389|organism=Clytia hemisphaerica|type=transcript|length=8105bp|location=Sequence derived from alignment at scaffold_213:1107393..1115497- (Clytia hemisphaerica)
GTTTTTGAAAACCCGCGATGCTTCTGATTGATCAAGCGCTGAAATTCTAT
TGTAATGCCACGTGGCCTAAGTAGGATTCCTACCTAACCACGGTACACTT
TTCAGCAAAAGTACGACATCTAGCCCTTTGGGCTTTATAAATCTATGTCC
CCAATACCTTTTTATAGTAGAGAATAAGCAAGGTGAATTTTGAATCAAAA
TGGAACATCCGTTCAAACGCTCAGAAACAACAGACATCGCGATCAAAATT
CAAGATGAAACATTTTATCTCCATCAACAAATCTTATCTTTTTATTCAAC
AAAATTTCGTGATATTTTACATGAGGACAAACAACAAAATCACCATGGAG
ATGGACAGATTCAAGAGATTTCATTGGTTGTTGATGAGAAGGCAGAAGTT
GAAGACTGGATGACCTTCTTTTTGTTGTTTTATCCAGAACATTTTCATTT
GATAGACATCGATGTTATAGGTATGGGAACTTAAATAACAACTGAAACCC
AGAAAGGAATACTTCGGTTGGGACAATTTTACCCCAAAACTTGTACTTAT
AACAGACTAGCCAATATTTGAGGCTAAAACTTATACAATACGTCTCCGAT
CTATCTTGTCCAAACCCTTCTCCATATATTATGCAAATTGTATATCGGAC
GGAGGATCGAGACAAAAATACCATTAGATGCTAGAAATTTCCAACATGTT
TCGGCCAGGGCCGTTTTCAAGGTATATTTCTAGCTAAAAAAATTTCAGTT
TTTTTAAACAAAAAAAAATTTTTTGACGTCAAATAAACGCTTTTTTGTGA
CGTATATTTATGAGCCGTCTGTAAGTGATCTGGAAAAAATGGACGTGTGT
ATTATGCAAATTGGAAATTAAATAGAAGGATTCGAATAATAGATGTTCGA
ATTGGCGAGAGTCCAATATAGTGTTAAATTAAGAATAAGCATTGGAAAAT
TGTAGATTCACGATTTGGGTCATATAAGAATCAACCATTTCTATCGTTTA
AAGTGAATTCGAAAATTAAATCGTCAAAATTCTAATAATATAATTACACA
AAGAATAAATAGACCTTCTGTTTGGTTGGACAAGTTTTAAAAAACTTTCA
ATTTTTTAGATTCCTTTTGGCTAGCGTACTCTGGGGGTCCAAAGATATGG
TGTTCGTCCACCAGTATAGGATTCCCATATTTCTTTCATATCCATTAGAC
ACAAAAAATTAACTATTTGTTTTAGTTGGATAACTTCTAGAAATATAAGA
CGTTCTACATCCCTTTTTTAATTCATGATATGCAACACTAGAGAATCTTC
CAAGAATTTCTAAAAAGTTCAACCCAATACGTCAATTTTTCTATCGTTTA
AGTGACGTATTGGGTTGAACTTTTTGAAAATTCTCAGAAGACTCTCCAGT
GTTGCATATCATGAATAGCATATCTTTGGGGTCAATGTAGATGAAGTTTC
CCATAATCTTTTTTATCCATTAGACGAAGAAAGAATTGACCGTTTGATTA
CACTTGGCCAGAAATACGATGCAGAATGGATTTCGCGGACTCTCGACTCT
TACTTCACTCAAAAACAAGATGGCGGATTCGTAAACAAAGAAGATGAGGA
AGAGGCTATAGATTATGAGAATTGCGAAAGAAACATCAAAGGTAATAGCG
AGTATCTCACTAGCCTGTACTTAGCCTGTACCAATCTCTTCTTCGCTGAC
TGAAAAGATAACGCGAAGTTCGGTTTGTTACGGTTAGGCAAAGTTCCGTG
TCTCAAAAATTTTGACGCAAATCTCCAAATGTCTCTGTGCTGGAGCGTAG
CTTTTTTTAGCATTTAGCATTTCAAAGCAAAAAGATTTAGCAAAAAATCG
AATTAGCGTCAAAACTTGAAAGGCTTCTATCTTCAAGAATCATCAAAGTG
GAGCTCACAAAGAAACGGAGTTGATAATCCCGGTTTTTGGTGAGGTAATT
GCTAGTTTCTTCCGTTTCTTGCTGAGTCAACCATTTTCTGATTAAAGAAG
CCTTTTTAGTGTTCTGACACAAATCCGATTTATCCCGAAAACCCCACATT
TTTGAAATTTTGAAATTCTTTGAAATTTTTCATTTTTAAGGCATGCTGAT
TGGTTTCAAGTATAAATTCCACGAGTTGACATTAAAATTGATCAATTTCA
ATTATTGTCCAATCAATGAGCTCCAACGATTGGAAGGGTTTGACGATCTT
CACGATGATTTCAAAATCAAATTAGCCATGTGTCGAGTGACACAAGCAGT
CGATACAAACCATGTCAAAACCACTTTGGAAATCTTTAACACTATGTTTC
GGCAGACAGAGGAAGGAATAAAGCAGACAAAGGTAACCCATGTATATAGA
CCACGTTCACACGTAACGGTTCCGTTCCACTCTGAAGCAAAATTAAGCCA
TTCTATTGGTTAAATTCAAGTTTTACGACACTTCTAACCAATAGATGATA
GAGTCGATATTTCAGGTTGGTGAAAAAAATACAACAAAAGGAGCTCTTCC
AGAAAAAATATGGGGATATAACAATTTGTGGAAATTCAACCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCC
CCCCCCTAAACATTGCAACTTTTGACCCCCAGACAACAGGTTTAACCCCA
TGATATTCAAAATTACCCAGGGACAGCAGGTTTAACTCCCGTACAAGCAT
CAGTTGACCCCCTGGACAATTAAAATTACTCACAGACAGCAACTTAAACC
CCTTGAAAAAGCATCAGTTGACCTCCCTTGGACAAGAGCAAATTTTGTAG
ATTTTTCACTACACCCCCTTCGCCAACAATATATCCTCCAATCCCCCAAT
GAAGTGCCCAAGTTCAATAAACTATTTATCATTTCTTTCAGGATATAGAG
AGCAGACCGTTAGATGAACAACTTTTCAACGACAGACAAGATTCTGATAT
GGAGATTCCAACCAAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTAC
TAGGCTTCTACTCTGAGGTAGGCAACTTATTTTATTTACAATAATTTCAC
GACAAAAGAAGTCGCCAGAGCCAAAAATTAAGAAAGACACGTGCACGTGG
ACTGAAAAGATAAAGGGTAAAGAGTTCGCGGATGAGGGGTATGTGTGGAT
TTTAGCTGAAAAGGTGACCCTTAGAGAGACTTTTTTGAAAAATGTTCTTC
CATTTTTGAAAAAAGTCTTACCCTTAAAGGCGAAAATAAATAAAATGTTG
TGTTTCCGGAATGCGGATGAAGGAAAAAAGCTCCTATGCGGCCGGCCGGA
AAAAACATTATTTTTTGCTATTTTTGATAACTTAAGATCATTGAAATAGA
ACTTTAAAGATATCCTTTATGTGCAAACGGTATGAAGTAAATCTGAATAC
TAATGTATCAACTACTAACGAACAAAATTGATTTACAAGCGGGAATATCA
AACCAAAAGACGTTTGATAGCTTGAATGGTCAACTTGATTTTCTTTATGA
TGAACCCATAGTCTGCGGCCGCGTCAGAAAAATTTTTTGTTTCACCCGGC
CGGTTTCCGGAAACACTACATTTTTTTTATTTTCGCCTTATACATTTTTT
TCTCTCGAAAACAAAAAAAAATCCTAAAAATCGTGAATTTTCCAACCCTC
AGAGAAACTACCTTGAAATTTTCTGATTTTTCCGATCCTTAGAGAGACTT
TGAAAGGTGGAAAAACCCTTACCGTCCGCGCATACCCAAAACCCATTTTT
GCCTAAGTACCCCCCTCCCGGCCAATTCGAAACAACCTCAATTTTATTCA
TAATCAGAAGCAAATGTTAATAGTATGGAAATGTTTAGGAATTTTTTTGC
ACGTAGAAAAACATAGACTAAGGAATTTTCTTCATAGAAATCACGAAAGA
AATTCAAAATATGACAAAAACATTGTCAGCTTCAGTACACAAGTTGAGGC
CAGCCAGTCTTATAATTTTCTCATCGCATTTTCTTTTAGATTTTGAGAAC
AGAATGGCAACAGGACCTTTCTTCAAGCATGGGTTTAGGTGATTCGAAAT
CACCACTGTTTAGTGGTTCTTATGACAAAGCGACGGTTAAAATGTTTTTA
CATCTTATCTATGCAAGTCATCCTGCTGAACTAACAGGTAAGCCTACAGC
TTATTTCTGATTTAACGGATTTAGAAATTTCACAATTTTCGCGACTCACT
TTCGCTACATGGTTGGTTGGGTTAGAATGTGGGTGGGGGGTGGTTTGGTA
ATTTTTTTTCGCGTCTTTTTTTTGCATGGACCAAAAGATTTTTTGTGTGA
GTCTAATATTTTTGCGTGGGTCCAAAGTTTGATAATTTAGTTTATCCTTT
ATACTCTATTCTATACATTTCAAGGATATCAACATAATTACAGTCACCAG
CGCCAAAAGATTTACCCATGCTCAAAATTTGACCACGCAAAAACACTTTA
AATTTACCCACTTACTCACATGTACCCACTCCACCACGCACCCACTCAGC
CCGATTCGTCCATCAATTTAGCTGACTAAATTTTCGCTAATGAAAATTCC
CACAAATGGCCTGACTTATGAAACTTTAACAAACATTAACAAAGAAAAAG
ACACTTTTTACCTTTGAAAATTTTCATGACTTTCCCAGCTGGCACACAAC
GTTGTTTCGACATTTTTCTAACGTTCACAACGTCCATATAACGTGTAAAC
AAAAAAACGTTGAAACAACGTTGTGTGCCAGCTGGGATTGCACCACCCCC
TTCTCACAGATCGAGTAGGTTTTTGTTAGACACTGGTGTTAAAAACAACA
AAACTCGATTGGGATTGATATAGCTGGGTATTTGAATTCCATGGTTTTCA
AGTCAGAAAATTATTACTGAACTTTAATAGATATTCGAAGAGACGATACC
ACTGAAATCTTTGATCGGAGATTTTTGAAAGTGGAACCCTAATGGTAGCA
CTACTCAATGAGGGTGAAAACTTTTTAAATGGAAAATTTCTTTGAATTAT
AAATTGACCCACATCGAGTAGTGCTATCATTAGGGTATCATTTTTCGAAA
AACTGCGATCAAATAAGCTGGATATAGCTCAGGCCATGATATATAAAGGT
CAGTAAAACTTACCCGCAATGATCGCGAAAATGAGAAATGTGTCCAAATG
TTTACCAATTTCTTGTAGTACTTGAAGTAAGGTATACGTTTCATATGAAA
CAGATTTCGAACAGTTCTAATCCTCATTGACACACTGCGAGAACCAATAG
TCACAATGAATTCAATTTAATTTTAGGGAGCACAGATTTCGAGCAGCTCC
TATCTTTATTGACACACTACGAGATTAAATGGCCAATCAAACGAGCAGAA
GAGTACCTCATCCAATCAAATCATTTCAACAAAAAAGATAAAAGCACGAT
GTGGGGAATAGATAAAGCCGAAAATCAGATTCAAGGGCTCCTTTTGGCAG
ACCAGTATGGACTCGAACGACTCCAGTTAAACATTATTAAAAATATTGAG
AAAGCAAGTTCACTTGCTGACTATAAAAGTTTTCAAAAGCTTNGCCCGAT
TCGTCCATCAATTTAGCAGACTAAATTTTCGCTAATGAAAATTCCCACAA
ATGGCCTGACTTATGAAACTTTAACAAACATTAACAAAGAAAAAGACACT
TTTTACCTTTGAAAATTTTCATGACTTTCCCAGCTGGCACACAACGTTGT
TTCGACATTTTTCTAACGTTCACAACGTCCATATAACGTGTAAACAAAAA
AACGTTGAAACAACGTTGTGTGCCAGCTGGGATTGCACCACCCCCTTCTC
ACAGATCGAGTAGGTTTTTGTTAGACACTGGTGTTAAAAACAACAAAACT
CGATTGGGATTGATATAGCTGGGTATTTGAATTCCATGGTTTTCAAGTCA
GAAAATTATTACTGAACTTTAATAGATATTCGAAGAGACGATACCACTGA
AATCTTTGATCGGAGATTTTTGAAAGTGGAACCCTAATGGTAGCACTACT
CAATGAGGGTGAAAACTTTTTAAATGGAAAATTTCTTTGAATTATAAATT
GACCCACATCGAGTAGTGCTATCATTAGGGTATCATTTTTCGAAAAACTG
CGATCAAATAAGCTGGATATAGCTCAGGCCATGATATATAAAGGTCAGTA
AAACTTACCCGCAATGATCGCGAAAATGAGAAATGTGTCCAAATGTTTAC
CAATTTCTTGTAGTACTTGAAGTAAGGTATACGTTTCATATGAAACAGAT
TTCGAACAGTTCTAATCCTCATTGACACACTGCGAGAACCAATAGTCACA
ATGAATTCAATTTAATTTTAGGGAGCACAGATTTCGAGCAGCTCCTATCT
TTATTGACACACTACGAGATTAAATGGCCAATCAAACGAGCAGAAGAGTA
CCTCATCCAATCAAATCATTTCAACAAAAAAGATAAAAGCACGATGTGGG
GAATAGATAAAGCCGAAAATCAGATTCAAGGGCTCCTTTTGGCAGACCAG
TATGGACTCGAACGACTCCAGTTAAACATTATTAAAAATATTGAGAAAGC
AAGTTCACTTGCTGACTATAAAAGTTTTCAAAAGCTTACAGCCAGGTCAA
CTTATCTTGTTTTAAGACGATGCATTCAAGAAAGACCGAAGAAAATAGAA
GATGGATCATTTTCTAATGAAGGAAAAGCTATTGTTAAATTTTTGGATAA
ATTCTATAGATAAACTGATGTTTAGACAATAGGTAATGTGCTTATCCTAC
ATAAATGTTGGCATTGTATTTATCTTTTTGAGGAAAAGAATCACAACAAA
TTTCATTTTTGATAAACTCAATTTTTTTTTGTAAGCATAACGTTTATAAG
CATACTTAGGCTCAAACTCGGTAAAAAAATGAGCATAATTTAAAGCTTTT
AAAGCTGTTTTAGCTCTTAGACCAAAGATTTTCACATGCGGCGCCAAATT
ACAAAAAAATTGTTATTTTTTGAGCCGAATCAATTAAAAACTTAAAAATT
CGAAATTTCTATGAACCCAATGAAAATCAACAAAACGAAGTATAAGCATA
TAAATAAGCATAAATTAAGGCTGAAAATGAGATTTTGCTAAGCATACAGA
GCTACGACCCGATTTTCTAGTATGCTTATAAAAAAGAGTGTGGTCAAACC
ATACTGTATGTAATATAGAATAGTCAAAAACTTATTTTAAGTTTCGACTT
CATTT

Coding sequence (CDS) from alignment at scaffold_213:1107393..1115497-

>TCONS_00052389 ID=TCONS_00052389|Name=TCONS_00052389|organism=Clytia hemisphaerica|type=CDS|length=8082bp|location=Sequence derived from alignment at scaffold_213:1107393..1115497- (Clytia hemisphaerica)
GGAGCACAGATTTCGAGCAGCTCCTATCTTTATTGACACACTACGAGATT
AAATGGCCAATCAAACGAGCAGAAGAGTACCTCATCCAATCAAATCATTT
CAACAAAAAAGATAAAAGCACGATGTGGGGAATAGATAAAGCCGAAAATC
AGATTCAAGGGCTCCTTTTGGCAGACCAGTATGGACTCGAACGACTCCAG
TTAAACATTATTAAAAATATTGAGAAAGCAAGTTCACTTGCTGACTATAA
AAGTTTTCAAAAGCTTACAGCCAGGTCAACTTATCTTGTTTTAAGACGAT
GCATTCAAGAAAGACCGAAGAAAATAGAAGATGGATCATTTTCTAATGAA
GGAAAAGCTATTGTTAAATTTTTGGATAAATTCTATAGATAAATTTTGAG
AACAGAATGGCAACAGGACCTTTCTTCAAGCATGGGTTTAGGTGATTCGA
AATCACCACTGTTTAGTGGTTCTTATGACAAAGCGACGGTTAAAATGTTT
TTACATCTTATCTATGCAAGTCATCCTGCTGAACTAACAGGATATAGAGA
GCAGACCGTTAGATGAACAACTTTTCAACGACAGACAAGATTCTGATATG
GAGATTCCAACCAAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTACT
AGGCTTCTACTCTGAGGCATGCTGATTGGTTTCAAGTATAAATTCCACGA
GTTGACATTAAAATTGATCAATTTCAATTATTGTCCAATCAATGAGCTCC
AACGATTGGAAGGGTTTGACGATCTTCACGATGATTTCAAAATCAAATTA
GCCATGTGTCGAGTGACACAAGCAGTCGATACAAACCATGTCAAAACCAC
TTTGGAAATCTTTAACACTATGTTTCGGCAGACAGAGGAAGGAATAAAGC
AGACAAAGACGAAGAAAGAATTGACCGTTTGATTACACTTGGCCAGAAAT
ACGATGCAGAATGGATTTCGCGGACTCTCGACTCTTACTTCACTCAAAAA
CAAGATGGCGGATTCGTAAACAAAGAAGATGAGGAAGAGGCTATAGATTA
TGAGAATTGCGAAAGAAACATCAAAGATGGAACATCCGTTCAAACGCTCA
GAAACAACAGACATCGCGATCAAAATTCAAGATGAAACATTTTATCTCCA
TCAACAAATCTTATCTTTTTATTCAACAAAATTTCGTGATATTTTACATG
AGGACAAACAACAAAATCACCATGGAGATGGACAGATTCAAGAGATTTCA
TTGGTTGTTGATGAGAAGGCAGAAGTTGAAGACTGGATGACCTTCTTTTT
GTTGTTTTATCCAGAACATTTTCATTTGATAGACATCGATGTTATAGGGA
GCACAGATTTCGAGCAGCTCCTATCTTTATTGACACACTACGAGATTAAA
TGGCCAATCAAACGAGCAGAAGAGTACCTCATCCAATCAAATCATTTCAA
CAAAAAAGATAAAAGCACGATGTGGGGAATAGATAAAGCCGAAAATCAGA
TTCAAGGGCTCCTTTTGGCAGACCAGTATGGACTCGAACGACTCCAGTTA
AACATTATTAAAAATATTGAGAAAGCAAGTTCACTTGCTGACTATAAAAG
TTTTCAAAAGCTTACAGCCAGGTCAACTTATCTTGTTTTAAGACGATGCA
TTCAAGAAAGACCGAAGAAAATAGAAGATGGATCATTTTCTAATGAAGGA
AAAGCTATTGTTAAATTTTTGGATAAATTCTATAGATAAATTTTGAGAAC
AGAATGGCAACAGGACCTTTCTTCAAGCATGGGTTTAGGTGATTCGAAAT
CACCACTGTTTAGTGGTTCTTATGACAAAGCGACGGTTAAAATGTTTTTA
CATCTTATCTATGCAAGTCATCCTGCTGAACTAACAGGATATAGAGAGCA
GACCGTTAGATGAACAACTTTTCAACGACAGACAAGATTCTGATATGGAG
ATTCCAACCAAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTACTAGG
CTTCTACTCTGAGGCATGCTGATTGGTTTCAAGTATAAATTCCACGAGTT
GACATTAAAATTGATCAATTTCAATTATTGTCCAATCAATGAGCTCCAAC
GATTGGAAGGGTTTGACGATCTTCACGATGATTTCAAAATCAAATTAGCC
ATGTGTCGAGTGACACAAGCAGTCGATACAAACCATGTCAAAACCACTTT
GGAAATCTTTAACACTATGTTTCGGCAGACAGAGGAAGGAATAAAGCAGA
CAAAGACGAAGAAAGAATTGACCGTTTGATTACACTTGGCCAGAAATACG
ATGCAGAATGGATTTCGCGGACTCTCGACTCTTACTTCACTCAAAAACAA
GATGGCGGATTCGTAAACAAAGAAGATGAGGAAGAGGCTATAGATTATGA
GAATTGCGAAAGAAACATCAAAGATGGAACATCCGTTCAAACGCTCAGAA
ACAACAGACATCGCGATCAAAATTCAAGATGAAACATTTTATCTCCATCA
ACAAATCTTATCTTTTTATTCAACAAAATTTCGTGATATTTTACATGAGG
ACAAACAACAAAATCACCATGGAGATGGACAGATTCAAGAGATTTCATTG
GTTGTTGATGAGAAGGCAGAAGTTGAAGACTGGATGACCTTCTTTTTGTT
GTTTTATCCAGAACATTTTCATTTGATAGACATCGATGTTATAGGGAGCA
CAGATTTCGAGCAGCTCCTATCTTTATTGACACACTACGAGATTAAATGG
CCAATCAAACGAGCAGAAGAGTACCTCATCCAATCAAATCATTTCAACAA
AAAAGATAAAAGCACGATGTGGGGAATAGATAAAGCCGAAAATCAGATTC
AAGGGCTCCTTTTGGCAGACCAGTATGGACTCGAACGACTCCAGTTAAAC
ATTATTAAAAATATTGAGAAAGCAAGTTCACTTGCTGACTATAAAAGTTT
TCAAAAGCTTACAGCCAGGTCAACTTATCTTGTTTTAAGACGATGCATTC
AAGAAAGACCGAAGAAAATAGAAGATGGATCATTTTCTAATGAAGGAAAA
GCTATTGTTAAATTTTTGGATAAATTCTATAGATAAATTTTGAGAACAGA
ATGGCAACAGGACCTTTCTTCAAGCATGGGTTTAGGTGATTCGAAATCAC
CACTGTTTAGTGGTTCTTATGACAAAGCGACGGTTAAAATGTTTTTACAT
CTTATCTATGCAAGTCATCCTGCTGAACTAACAGGATATAGAGAGCAGAC
CGTTAGATGAACAACTTTTCAACGACAGACAAGATTCTGATATGGAGATT
CCAACCAAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTACTAGGCTT
CTACTCTGAGGCATGCTGATTGGTTTCAAGTATAAATTCCACGAGTTGAC
ATTAAAATTGATCAATTTCAATTATTGTCCAATCAATGAGCTCCAACGAT
TGGAAGGGTTTGACGATCTTCACGATGATTTCAAAATCAAATTAGCCATG
TGTCGAGTGACACAAGCAGTCGATACAAACCATGTCAAAACCACTTTGGA
AATCTTTAACACTATGTTTCGGCAGACAGAGGAAGGAATAAAGCAGACAA
AGACGAAGAAAGAATTGACCGTTTGATTACACTTGGCCAGAAATACGATG
CAGAATGGATTTCGCGGACTCTCGACTCTTACTTCACTCAAAAACAAGAT
GGCGGATTCGTAAACAAAGAAGATGAGGAAGAGGCTATAGATTATGAGAA
TTGCGAAAGAAACATCAAAGATGGAACATCCGTTCAAACGCTCAGAAACA
ACAGACATCGCGATCAAAATTCAAGATGAAACATTTTATCTCCATCAACA
AATCTTATCTTTTTATTCAACAAAATTTCGTGATATTTTACATGAGGACA
AACAACAAAATCACCATGGAGATGGACAGATTCAAGAGATTTCATTGGTT
GTTGATGAGAAGGCAGAAGTTGAAGACTGGATGACCTTCTTTTTGTTGTT
TTATCCAGAACATTTTCATTTGATAGACATCGATGTTATAGGGAGCACAG
ATTTCGAGCAGCTCCTATCTTTATTGACACACTACGAGATTAAATGGCCA
ATCAAACGAGCAGAAGAGTACCTCATCCAATCAAATCATTTCAACAAAAA
AGATAAAAGCACGATGTGGGGAATAGATAAAGCCGAAAATCAGATTCAAG
GGCTCCTTTTGGCAGACCAGTATGGACTCGAACGACTCCAGTTAAACATT
ATTAAAAATATTGAGAAAGCAAGTTCACTTGCTGACTATAAAAGTTTTCA
AAAGCTTACAGCCAGGTCAACTTATCTTGTTTTAAGACGATGCATTCAAG
AAAGACCGAAGAAAATAGAAGATGGATCATTTTCTAATGAAGGAAAAGCT
ATTGTTAAATTTTTGGATAAATTCTATAGATAAATTTTGAGAACAGAATG
GCAACAGGACCTTTCTTCAAGCATGGGTTTAGGTGATTCGAAATCACCAC
TGTTTAGTGGTTCTTATGACAAAGCGACGGTTAAAATGTTTTTACATCTT
ATCTATGCAAGTCATCCTGCTGAACTAACAGGATATAGAGAGCAGACCGT
TAGATGAACAACTTTTCAACGACAGACAAGATTCTGATATGGAGATTCCA
ACCAAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTACTAGGCTTCTA
CTCTGAGGCATGCTGATTGGTTTCAAGTATAAATTCCACGAGTTGACATT
AAAATTGATCAATTTCAATTATTGTCCAATCAATGAGCTCCAACGATTGG
AAGGGTTTGACGATCTTCACGATGATTTCAAAATCAAATTAGCCATGTGT
CGAGTGACACAAGCAGTCGATACAAACCATGTCAAAACCACTTTGGAAAT
CTTTAACACTATGTTTCGGCAGACAGAGGAAGGAATAAAGCAGACAAAGA
CGAAGAAAGAATTGACCGTTTGATTACACTTGGCCAGAAATACGATGCAG
AATGGATTTCGCGGACTCTCGACTCTTACTTCACTCAAAAACAAGATGGC
GGATTCGTAAACAAAGAAGATGAGGAAGAGGCTATAGATTATGAGAATTG
CGAAAGAAACATCAAAGATGGAACATCCGTTCAAACGCTCAGAAACAACA
GACATCGCGATCAAAATTCAAGATGAAACATTTTATCTCCATCAACAAAT
CTTATCTTTTTATTCAACAAAATTTCGTGATATTTTACATGAGGACAAAC
AACAAAATCACCATGGAGATGGACAGATTCAAGAGATTTCATTGGTTGTT
GATGAGAAGGCAGAAGTTGAAGACTGGATGACCTTCTTTTTGTTGTTTTA
TCCAGAACATTTTCATTTGATAGACATCGATGTTATAGGGAGCACAGATT
TCGAGCAGCTCCTATCTTTATTGACACACTACGAGATTAAATGGCCAATC
AAACGAGCAGAAGAGTACCTCATCCAATCAAATCATTTCAACAAAAAAGA
TAAAAGCACGATGTGGGGAATAGATAAAGCCGAAAATCAGATTCAAGGGC
TCCTTTTGGCAGACCAGTATGGACTCGAACGACTCCAGTTAAACATTATT
AAAAATATTGAGAAAGCAAGTTCACTTGCTGACTATAAAAGTTTTCAAAA
GCTTACAGCCAGGTCAACTTATCTTGTTTTAAGACGATGCATTCAAGAAA
GACCGAAGAAAATAGAAGATGGATCATTTTCTAATGAAGGAAAAGCTATT
GTTAAATTTTTGGATAAATTCTATAGATAAATTTTGAGAACAGAATGGCA
ACAGGACCTTTCTTCAAGCATGGGTTTAGGTGATTCGAAATCACCACTGT
TTAGTGGTTCTTATGACAAAGCGACGGTTAAAATGTTTTTACATCTTATC
TATGCAAGTCATCCTGCTGAACTAACAGGATATAGAGAGCAGACCGTTAG
ATGAACAACTTTTCAACGACAGACAAGATTCTGATATGGAGATTCCAACC
AAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTACTAGGCTTCTACTC
TGAGGCATGCTGATTGGTTTCAAGTATAAATTCCACGAGTTGACATTAAA
ATTGATCAATTTCAATTATTGTCCAATCAATGAGCTCCAACGATTGGAAG
GGTTTGACGATCTTCACGATGATTTCAAAATCAAATTAGCCATGTGTCGA
GTGACACAAGCAGTCGATACAAACCATGTCAAAACCACTTTGGAAATCTT
TAACACTATGTTTCGGCAGACAGAGGAAGGAATAAAGCAGACAAAGACGA
AGAAAGAATTGACCGTTTGATTACACTTGGCCAGAAATACGATGCAGAAT
GGATTTCGCGGACTCTCGACTCTTACTTCACTCAAAAACAAGATGGCGGA
TTCGTAAACAAAGAAGATGAGGAAGAGGCTATAGATTATGAGAATTGCGA
AAGAAACATCAAAGATGGAACATCCGTTCAAACGCTCAGAAACAACAGAC
ATCGCGATCAAAATTCAAGATGAAACATTTTATCTCCATCAACAAATCTT
ATCTTTTTATTCAACAAAATTTCGTGATATTTTACATGAGGACAAACAAC
AAAATCACCATGGAGATGGACAGATTCAAGAGATTTCATTGGTTGTTGAT
GAGAAGGCAGAAGTTGAAGACTGGATGACCTTCTTTTTGTTGTTTTATCC
AGAACATTTTCATTTGATAGACATCGATGTTATAGGGAGCACAGATTTCG
AGCAGCTCCTATCTTTATTGACACACTACGAGATTAAATGGCCAATCAAA
CGAGCAGAAGAGTACCTCATCCAATCAAATCATTTCAACAAAAAAGATAA
AAGCACGATGTGGGGAATAGATAAAGCCGAAAATCAGATTCAAGGGCTCC
TTTTGGCAGACCAGTATGGACTCGAACGACTCCAGTTAAACATTATTAAA
AATATTGAGAAAGCAAGTTCACTTGCTGACTATAAAAGTTTTCAAAAGCT
TACAGCCAGGTCAACTTATCTTGTTTTAAGACGATGCATTCAAGAAAGAC
CGAAGAAAATAGAAGATGGATCATTTTCTAATGAAGGAAAAGCTATTGTT
AAATTTTTGGATAAATTCTATAGATAAATTTTGAGAACAGAATGGCAACA
GGACCTTTCTTCAAGCATGGGTTTAGGTGATTCGAAATCACCACTGTTTA
GTGGTTCTTATGACAAAGCGACGGTTAAAATGTTTTTACATCTTATCTAT
GCAAGTCATCCTGCTGAACTAACAGGATATAGAGAGCAGACCGTTAGATG
AACAACTTTTCAACGACAGACAAGATTCTGATATGGAGATTCCAACCAAA
GAAGGGAAGACATTTTCGGTCCATTCTAAAGTACTAGGCTTCTACTCTGA
GGCATGCTGATTGGTTTCAAGTATAAATTCCACGAGTTGACATTAAAATT
GATCAATTTCAATTATTGTCCAATCAATGAGCTCCAACGATTGGAAGGGT
TTGACGATCTTCACGATGATTTCAAAATCAAATTAGCCATGTGTCGAGTG
ACACAAGCAGTCGATACAAACCATGTCAAAACCACTTTGGAAATCTTTAA
CACTATGTTTCGGCAGACAGAGGAAGGAATAAAGCAGACAAAGACGAAGA
AAGAATTGACCGTTTGATTACACTTGGCCAGAAATACGATGCAGAATGGA
TTTCGCGGACTCTCGACTCTTACTTCACTCAAAAACAAGATGGCGGATTC
GTAAACAAAGAAGATGAGGAAGAGGCTATAGATTATGAGAATTGCGAAAG
AAACATCAAAGATGGAACATCCGTTCAAACGCTCAGAAACAACAGACATC
GCGATCAAAATTCAAGATGAAACATTTTATCTCCATCAACAAATCTTATC
TTTTTATTCAACAAAATTTCGTGATATTTTACATGAGGACAAACAACAAA
ATCACCATGGAGATGGACAGATTCAAGAGATTTCATTGGTTGTTGATGAG
AAGGCAGAAGTTGAAGACTGGATGACCTTCTTTTTGTTGTTTTATCCAGA
ACATTTTCATTTGATAGACATCGATGTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033120XLOC_033120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052389-proteinTCONS_00052389-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052389-exon-scaffold_213-1575043694:1115028..1115497TCONS_00052389-exon-scaffold_213-1575043694:1115028..1115497Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1575043694:1113857..1114024TCONS_00052389-exon-scaffold_213-1575043694:1113857..1114024Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1575043694:1113166..1113407TCONS_00052389-exon-scaffold_213-1575043694:1113166..1113407Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1575043694:1111581..1111706TCONS_00052389-exon-scaffold_213-1575043694:1111581..1111706Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1575043694:1110461..1110608TCONS_00052389-exon-scaffold_213-1575043694:1110461..1110608Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1575043694:1107393..1108276TCONS_00052389-exon-scaffold_213-1575043694:1107393..1108276Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1510915933:1115028..1115497TCONS_00052389-exon-scaffold_213-1510915933:1115028..1115497Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1510915933:1113857..1114024TCONS_00052389-exon-scaffold_213-1510915933:1113857..1114024Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1510915933:1113166..1113407TCONS_00052389-exon-scaffold_213-1510915933:1113166..1113407Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1510915933:1111581..1111706TCONS_00052389-exon-scaffold_213-1510915933:1111581..1111706Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1510915933:1110461..1110608TCONS_00052389-exon-scaffold_213-1510915933:1110461..1110608Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1510915933:1107393..1108276TCONS_00052389-exon-scaffold_213-1510915933:1107393..1108276Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1491911889:1115028..1115497TCONS_00052389-exon-scaffold_213-1491911889:1115028..1115497Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1491911889:1113857..1114024TCONS_00052389-exon-scaffold_213-1491911889:1113857..1114024Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1491911889:1113166..1113407TCONS_00052389-exon-scaffold_213-1491911889:1113166..1113407Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1491911889:1111581..1111706TCONS_00052389-exon-scaffold_213-1491911889:1111581..1111706Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1491911889:1110461..1110608TCONS_00052389-exon-scaffold_213-1491911889:1110461..1110608Clytia hemisphaericaexon
TCONS_00052389-exon-scaffold_213-1491911889:1107393..1108276TCONS_00052389-exon-scaffold_213-1491911889:1107393..1108276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1107393..1115497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.332485	0.0561512	0.347019	0.632754	0.154834	0.293308	0.381231	0.621868	5.75214	9.69858	7.79362	4.41543	3.082	2.68085	10.7544	10.4812	9.65339	3.27949	17.674	11.0475	3.88533	4.62292	12.8109	24.0564	51.9463	42.6865	2.91252	4.17472	59.9532	33.5627
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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