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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052383 ID=TCONS_00052383|Name=TCONS_00052383|organism=Clytia hemisphaerica|type=transcript|length=1349bpRun BLAST on NCBI transcript from alignment at scaffold_213:1021046..1030357- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052383 ID=TCONS_00052383|Name=TCONS_00052383|organism=Clytia hemisphaerica|type=transcript|length=9312bp|location=Sequence derived from alignment at scaffold_213:1021046..1030357- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052383 vs. Swiss-Prot (Human)
Match: ZRAB2 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens GN=ZRANB2 PE=1 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 1.785e-43 Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 2
Query: 479 FRASEGDWVCSKEDCENVNFARRDKCNKCGRAKGS-SYIVKNAGNEIGSKFAEKSKGLFSADDWQCSKCSNINWARRTTCNVCNAPKVGPDENRTGFGGGFKENEGVIYNERQDDSDGEYDEF 844
FR S+GDW+C + C NVNFARR CN+CGR K + + ++K G EIG AEKS+GLFSA+DWQC CSN+NWARR+ CN+CN PK E RTG+GGGF E E V Y ER+ +SDGEYDEF
Sbjct: 6 FRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIERE-ESDGEYDEF 127 The following BLAST results are available for this feature:
BLAST of TCONS_00052383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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