TCONS_00052260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052260
Unique NameTCONS_00052260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052260 ID=TCONS_00052260|Name=TCONS_00052260|organism=Clytia hemisphaerica|type=transcript|length=1568bp
TTTCTATTCATTACATTTCAAATAATGTATTTGTGTTTACAGCTCTCCTt
tgtatgatattttttttaaatttgaaagaaaaaagaaaatgaaaacatta
gtACTGTACATCGTGTTATCAGAGTGAatgaaatcataaaaaattaaGAC
CCCAaaccccccccggcaattaggtcccccctgtttattaaaattttcca
aCCCCCCCCATTTATTCGccccccccccgtttatttagaGCCTAAGAGTA
CGGGAAACGAAAAAATGCACATCAATAAAAGGGTCGATTCTTCTTCGATG
TTGTAATAAAAAAGGGTTTGACCACCTTCTAATTGTCTGTCAGCGAAAAT
CAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCttgaattttggctt
tgacGTTGTCGATAGTATCATTTGGTTCGACTTCTAAAGTAATAGTTTTA
CCAGATGAGGTTTTGACAAAGATTGTCATTGACCGAATGGGAACGGAACG
CAAGACCAATCGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGAAAGGG
TTCGGCCATCCTCTAATTGTCTGCCAGAGAAGATCAAACGTTGTTGATCT
GGAGGGATTCCTTCTTTATCTTGAATTTTGGTTTTGACGTTGTCGATAGT
ATCATTTGGTTCGACTTCTAAAGTAATGGTTTTACCAGATATAGATAAGG
TTTTGACAAAGATTGTCATTGACCGAATGGGAACGGAACGCAAGAGCAAG
TGAAGGGTTGATTCTTTTTGAATGTTGTGGTCGGAAAGGGTTCGGCCATC
CTCTAATTTTCTGCCAGAGAAGATCAAACGTTGTTGATCTGGAGGGATTC
CTTCTTTATCttgaattttggctttgacGTTGTCGATAGTATCATTTGGT
TCGACTTCTAAAGTAATGGTTTTACCAGATAAGGTTTTGACAAAGATTGT
CATTGACCGAATGGGAACGGAAGGCAAGACCAAGTTAAGGGTGGATTCCT
TTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCTAATTCTTTGCCA
GCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCttgaat
tttggctttgacGTTGTCGATAGTATCATTTGGTTCGACTTCCAAAGTGA
TGgctttcattttgaatttgacgAAGATTGAAAAAGATCGTTTTCGCAAA
ACTAAACGAAAATTCGATTCAATTAGTATTTGTTCTAACAATATATCTTT
GTATTTTAACTCCTTGTCTTGGTAGGTCAAATAGTACTGAGCCGAGGAAA
GTCCAAGGTCTTCCTCTATTATCTCTAGAGGTATTTTACTTGAGCTTACG
ACAAAAGATGAGTGCTTTCCATCAAAGGTTCATCTTGAGGCTGAATTACA
CAATCAGATGAACAGGTGGCACCATTCAAGCTCGAAGCCGTAAGTTGCTG
CGTAGCTGGTTTTGAATTataacttattttttttagatttggtGCCAAGG
CTTGCTTTGAACTGGAAATCGACTGCGAGGTAGCACCAGAGTTTTGCAct
gttaaagaaaaaaaagga
Run BLAST on NCBI

transcript from alignment at scaffold_213:711238..713273+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052260 ID=TCONS_00052260|Name=TCONS_00052260|organism=Clytia hemisphaerica|type=transcript|length=2036bp|location=Sequence derived from alignment at scaffold_213:711238..713273+ (Clytia hemisphaerica)
TTTCTATTCATTACATTTCAAATAATGTATTTGTGTTTACAGCTCTCCTt
tgtatgatattttttttaaatttgaaagaaaaaagaaaatgaaaacatta
gtACTGTACATCGTGTTATCAGAGTGAatgaaatcataaaaaattaaGAC
CCCAaaccccccccggcaattaggtcccccctgtttattaaaattttcca
aCCCCCCCCATTTATTCGccccccccccgtttatttagaGCCTAAGAGTA
CGGGAAACGAAAAAATGCACATCAATAAAAGGGTCGATTCTTCTTCGATG
TTGTAATAAAAAAGGGTTTGACCACCTTCTAATTGTCTGTCAGCGAAAAT
CAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCttgaattttggctt
tgacGTTGTCGATAGTATCATTTGGTTCGACTTCTAAAGTAATAGTTTTA
CCAGATGAGGTTTTGACAAAGATTGTCATTGACCGAATGGGAACGGAACG
CAAGACCAATCGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGAAAGGG
TTCGGCCATCCTCTAATTGTCTGCCAGAGAAGATCAAACGTTGTTGATCT
GGAGGGATTCCTTCTTTATCTTGAATTTTGGTTTTGACGTTGTCGATAGT
ATCATTTGGTTCGACTTCTAAAGTAATGGTTTTACCAGATATAGATAAGG
TTTTGACAAAGATTGTCATTGACCGAATGGGAACGGAACGCAAGAGCAAG
TGAAGGGTTGATTCTTTTTGAATGTTGTGGTCGGAAAGGGTTCGGCCATC
CTCTAATTTTCTGCCAGAGAAGATCAAACGTTGTTGATCTGGAGGGATTC
CTTCTTTATCttgaattttggctttgacGTTGTCGATAGTATCATTTGGT
TCGACTTCTAAAGTAATGGTTTTACCAGATAAGGTTTTGACAAAGATTGT
CATTGACCGAATGGGAACGGAAGGCAATAGCAAGTGAAGGGGTGATTCTT
TTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCTAATTTTCTGCCA
GAGAAGATCAAACGTTGTTGATCTGGAGGGATTCcttctttattttgaat
tttggctttgacGTTGTCGATAGTATCATTTGGTTCGACTTCTAAAGTAA
TGGTTTTACCAGATAAGGTTTTGACAAAGATTGTCATTGACCAAATGCGA
ACGGAAGGTAAGACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTC
GGAAAGGGTTCGGCCATCCTCTAATTTTCTGCCAGAGAAGATCAAACGTT
GTTGATCTGGAGGGATTCCTTCTTTATCTTGAATTTTGGCTTTGAAGTTG
TTGATAGTATCATTTGGTTCGACTTTTAAAGTAATGGTTTTACCAGATAA
AGTTTTGACAAAGATTGTCAGTGACCGAATGGGAACGGAAGGCAAGACCA
AGTTAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCA
TCCTCTAATTCTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGAT
TCCTTCTTTATCttgaattttggctttgacGTTGTCGATAGTATCATTTG
GTTCGACTTCCAAAGTGATGgctttcattttgaatttgacgAAGATTGAA
AAAGATCGTTTTCGCAAAACTAAACGAAAATTCGATTCAATTAGTATTTG
TTCTAACAATATATCTTTGTATTTTAACTCCTTGTCTTGGTAGGTCAAAT
AGTACTGAGCCGAGGAAAGTCCAAGGTCTTCCTCTATTATCTCTAGAGGT
ATTTTACTTGAGCTTACGACAAAAGATGAGTGCTTTCCATCAAAGGTTCA
TCTTGAGGCTGAATTACACAATCAGATGAACAGGTGGCACCATTCAAGCT
CGAAGCCGTAAGTTGCTGCGTAGCTGGTTTTGAATTataacttatttttt
ttagatttggtGCCAAGGCTTGCTTTGAACTGGAAATCGACTGCGAGGTA
GCACCAGAGTTTTGCActgttaaagaaaaaaaagga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033072XLOC_033072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052260-exon-scaffold_213-1491911889:711238..712210TCONS_00052260-exon-scaffold_213-1491911889:711238..712210Clytia hemisphaericaexon
TCONS_00052260-exon-scaffold_213-1510915933:711238..712210TCONS_00052260-exon-scaffold_213-1510915933:711238..712210Clytia hemisphaericaexon
TCONS_00052260-exon-scaffold_213-1575043694:711238..712210TCONS_00052260-exon-scaffold_213-1575043694:711238..712210Clytia hemisphaericaexon
TCONS_00052260-exon-scaffold_213-1491911889:712679..713273TCONS_00052260-exon-scaffold_213-1491911889:712679..713273Clytia hemisphaericaexon
TCONS_00052260-exon-scaffold_213-1510915933:712679..713273TCONS_00052260-exon-scaffold_213-1510915933:712679..713273Clytia hemisphaericaexon
TCONS_00052260-exon-scaffold_213-1575043694:712679..713273TCONS_00052260-exon-scaffold_213-1575043694:712679..713273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:711238..713273 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.4411	19.3477	18.4798	13.0831	78.5296	55.9905	26.6723	31.8387	11.7416	28.1678	30.038	31.0981	21.1056	14.7192	13.7241	13.3452	11.0824	10.9428	29.4888	53.7252	22.9788	37.8294	17.9413	19.46	16.5782	19.894	72.2521	65.3141	44.551	37.3097
Blast
[Close]
BLAST of TCONS_00052260 vs. Swiss-Prot (Human)
Match: UBC (Polyubiquitin-C OS=Homo sapiens GN=UBC PE=1 SV=3)

HSP 1 Score: 463.381 bits (1191), Expect = 2.569e-155
Identity = 260/357 (72.83%), Postives = 295/357 (82.63%), Query Frame = -1 
Query:  267 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQKESTLNLVLPSVPIRS-MTIFVKTLSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFSGRKLEDGRTLSDHNIQKESTLHLLLRSVPIR-SMTIFVKTLSISGKTITLEVEPNDTIDNVKTKIQDKEGIPPDQQRLIFSGRQLEDGRTLSDYNIQKESTLRLVLRSVPIR-SMTIFVKTSSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFADRQLEGGQTLFYYNIEEESTLLLMC 1319
            I++  G+   Q  L +  K+L+    L +  I  ES   LVLR R    IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQKESTL+LVL    +R  M IFVKTL+GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIF+G++LEDGRTLSD+NIQKESTLHL+LR   +R  M IFVKTL  +GKTITLEVEP+DTI+NVK KIQDKEGIPPDQQRLIF+G+QLEDGRTLSDYNIQKESTL LVLR   +R  M IFVKT +GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFA +QLE G+TL  YNI++ESTL L+ 
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 375

HSP 2 Score: 463.381 bits (1191), Expect = 2.569e-155
Identity = 260/357 (72.83%), Postives = 295/357 (82.63%), Query Frame = -1 
Query:  267 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQKESTLNLVLPSVPIRS-MTIFVKTLSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFSGRKLEDGRTLSDHNIQKESTLHLLLRSVPIR-SMTIFVKTLSISGKTITLEVEPNDTIDNVKTKIQDKEGIPPDQQRLIFSGRQLEDGRTLSDYNIQKESTLRLVLRSVPIR-SMTIFVKTSSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFADRQLEGGQTLFYYNIEEESTLLLMC 1319
            I++  G+   Q  L +  K+L+    L +  I  ES   LVLR R    IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQKESTL+LVL    +R  M IFVKTL+GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIF+G++LEDGRTLSD+NIQKESTLHL+LR   +R  M IFVKTL  +GKTITLEVEP+DTI+NVK KIQDKEGIPPDQQRLIF+G+QLEDGRTLSDYNIQKESTL LVLR   +R  M IFVKT +GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFA +QLE G+TL  YNI++ESTL L+ 
Sbjct:  182 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 527

HSP 3 Score: 463.381 bits (1191), Expect = 2.569e-155
Identity = 260/357 (72.83%), Postives = 295/357 (82.63%), Query Frame = -1 
Query:  267 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQKESTLNLVLPSVPIRS-MTIFVKTLSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFSGRKLEDGRTLSDHNIQKESTLHLLLRSVPIR-SMTIFVKTLSISGKTITLEVEPNDTIDNVKTKIQDKEGIPPDQQRLIFSGRQLEDGRTLSDYNIQKESTLRLVLRSVPIR-SMTIFVKTSSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFADRQLEGGQTLFYYNIEEESTLLLMC 1319
            I++  G+   Q  L +  K+L+    L +  I  ES   LVLR R    IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQKESTL+LVL    +R  M IFVKTL+GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIF+G++LEDGRTLSD+NIQKESTLHL+LR   +R  M IFVKTL  +GKTITLEVEP+DTI+NVK KIQDKEGIPPDQQRLIF+G+QLEDGRTLSDYNIQKESTL LVLR   +R  M IFVKT +GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFA +QLE G+TL  YNI++ESTL L+ 
Sbjct:  334 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 679

HSP 4 Score: 454.136 bits (1167), Expect = 1.072e-151
Identity = 245/310 (79.03%), Postives = 273/310 (88.06%), Query Frame = -1 
Query:  267 FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQKESTLNLVLPSVPIR-SMTIFVKTLSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFSGRKLEDGRTLSDHNIQKESTLHLLLRSVPIR-SMTIFVKTLSISGKTITLEVEPNDTIDNVKTKIQDKEGIPPDQQRLIFSGRQLEDGRTLSDYNIQKESTLRLVLRSVPIR-SMTIFVKTSSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFADRQLEGGQTLFYYNIEEESTLLLMC 1184
              IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQKESTL+LVL    +R  M IFVKTL+GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIF+G++LEDGRTLSD+NIQKESTLHL+LR   +R  M IFVKTL  +GKTITLEVEP+DTI+NVK KIQDKEGIPPDQQRLIF+G+QLEDGRTLSDYNIQKESTL LVLR   +R  M IFVKT +GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFA +QLE G+TL  YNI++ESTL L+ 
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL---RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 299

HSP 5 Score: 363.999 bits (933), Expect = 5.511e-117
Identity = 204/279 (73.12%), Postives = 230/279 (82.44%), Query Frame = -1 
Query:  498 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQKESTLNLVLPSVPIRS-MTIFVKTLSGKTITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFSGRKLEDGRTLSDHNIQKESTLHLLLRSVPIRS-MTIFVKTLSISGKTITLEVEPNDTIDNVKTKIQDKEGIPPDQQRLIFSGRQLEDGRTLSDYNIQKESTLRLVLR 1319
            I++  G+   Q  L +  K+L+    L +  I  ES   LVLR R    IFVK    K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQKESTL+LVL    +R  M IFVKTL+GKTITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIF+G++LEDGRTLSD+NIQKESTLHL+LR   +R  M IFVKTL+  GKTITLEVEP+DTI+NVK KIQDKEGIPPDQQRLIF+G+QLEDGRTLSDYNIQKESTL LVLR
Sbjct:  410 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR---LRGGMQIFVKTLT--GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680
The following BLAST results are available for this feature:
BLAST of TCONS_00052260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBC2.569e-15572.83Polyubiquitin-C OS=Homo sapiens GN=UBC PE=1 SV=3[more]
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