TCONS_00052256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052256
Unique NameTCONS_00052256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052256 ID=TCONS_00052256|Name=TCONS_00052256|organism=Clytia hemisphaerica|type=transcript|length=1539bp
TTtatatatatatgtgaagaaataagaatttctgtccaactatattcact
caggagatttgggtggcagagcagcatatatATTAACTTGGAAACGTGGA
CAACTATGGCGACGCCAAGCTGTGGATGTTGGTGGATGGTAAAGGAATCG
AACTGTTGACCTACGTTGTGATCGTCATTTTGTACTCACGGATGAAATTA
TGGTCCATCAGACAGATTAAGATACCAAAACAAAATGAAGGTTCGCACTT
ATTACAACGTAATTCACTGGATGCTGCAAGATACACGGATAAGAAGATTA
TATTGATTCCAATCTTGTTCGTTTTATTGAGGATATGGGGAACGATCAGG
TTCTTCATGTTGTTGAGGACTGAAACATTAGCCTTCAAAGGGGATATCAC
AGTATTTGAGACTGCATTGCTCTACTTACAGACAATTGGTGATAATTTAC
AAGGAGCCATCAattgtattttattttgttgCATGACACCGGTTGTCCGA
AAACGAATCAACAAATCAGTCACGAGCATGCGCAGACAGAGATTTCATTT
GTATGATCATTTGGACAGTACCTCGGATACTTCTTCCAGAATATATCAAC
CAATTGATTGAGGAACGGGTAAATCACCGATAATCTGTAATTTCAGCTTC
ATACAATTTTCTAGGTTCCCAAATTACAAAAGCAGTGAGTTTATGCATTT
CCCATTTTAACAACTTCTGTCTCTAAAATTTGAGACAGTAAAAGTGCCGA
TTAACAGTTGTTTTTTCCCGGACTGGATGTAAATTAATCAAAAACTAACA
GTCGTTAGTAATCATGGGACTAATATAGGTAAGGCTGTTGGTAGCTGTCG
GTGTAAATGAGAATCATTGTAATGTCTTTCAAATATACACtacagtagac
tcccggttattcgaagctccAAGGGGGACCGGAAGCTCGAATAGCTGAAA
AAATTGTTTCCTGCCTGATTTTTAACTTAACCTTAAATGGGATGGCATTT
TCTGAATTAAGGCATTTTGGGTTCAGGAAAGTTTGCCAAGATGACTTTTT
ACTTTCTGAAAagtttcggtgtttgaagaaaaaaagtaatGGTATTTCGG
TATCAAACATGCCTTGGATCTTAAGCATTTTTCCTGTCGATGTTGAATGT
GATCCATGAAAAATGCATCGGTATTTTCGGTGCTCGCAGCCCCCTTTACG
TATGTCCATATTTAGGTTTATCTATTTTCAGATGATCGTAAGCGATTATT
AGTTAACAATTATGCGGATTTAGTAATAACGAGTAGAATTTTAAGCATGT
ATTATCAGTAATTTATTATTTCCAAGTAAttattaaggaataagtgtaaA
GAGATTTTAATGAGAATTTAATAAGAAtcatttgtaaattttgaaataga
CATTTTTTAGAAGAATAAAGATGCCATATATGATAAAGTTATGATTTCTT
GAATAGGGTTTCCAATGATAAAaggttttgtttctaaataagagtgatat
cgtttgcttactcatcaattttaattcacaagctttttc
Run BLAST on NCBI

transcript from alignment at scaffold_213:684315..686901+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052256 ID=TCONS_00052256|Name=TCONS_00052256|organism=Clytia hemisphaerica|type=transcript|length=2587bp|location=Sequence derived from alignment at scaffold_213:684315..686901+ (Clytia hemisphaerica)
TTtatatatatatgtgaagaaataagaatttctgtccaactatattcact
caggagatttgggtggcagagcagcatatatATTAACTTGGAAACGGTTG
GTTAAATATCAATTTTAAGATCAgcagcttttgaaaaaaattacattttg
atATAATTTACGAAAATACAATAAGGCGAGGGCTGAGAAAATACCGTCAC
ATTTTCTTATTCTAGTGGACAACTATGGCGACGCCAAGCTGTGGATGTTG
GTGGATGGTAAAGGAATCGAACTGTTGACCTACGTTGTGATCGTCATTTT
GTACTCACGGATGAAATTATGGTCCATCAGACAGATTAAGGTATGACAAG
ATTTAATCAGAGTTTATCCAAGTCAAACCGAGTTAGGTCAAGTAGATCAT
AATGCCATAACTCGTTTACTTTGTTAATTTGATATGAATTacactaattt
ttttttatctttttattgtGAATTCAAACTGATTATGTCGAGTTGATCCG
AGTTAACCCTAAACATAATATCCACGCATCTAACACTAGATACCAAAACA
AAATGAAGGTTCGCACTTATTACAACGTAATTCACTGGATGCTGCAAGAT
ACACGGATAAGAAGATTATATTGATTCCAATCTTGTTCGTTTTATTGAGG
ATATGGGGAACGATCAGGTTCTTCATGTTGTTGAGGACTGAAACATTAGC
CTTCAAAGGGGATATCACAGTATTTGAGACTGCATTGCTCTACTTACAGG
TAAGTTATAATCATTGATAGAACAATTTTCATTGCTGTAATGTTTGCTCC
TACTATAGTACtattttaattttctgatttataAGCTTTCTTGCTCTTCT
ATTACAATTCATAATAGCATACCGCAGTGAATCTAAAAATAGACATTGAT
TTTTCTGTTTGACCGAAATTCAATCCCATCACCCTTCGCGTTAACTACGC
CTGCATGCAAATTACACTCaactacaaagaaaaagtaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgactttcacgacttt
ttaattaagacgaaaaggattgtgggattgattttcggtcaagtgttaaa
agtaataattatgacgtttgcataacggTGTGCTATTCACATCAGAATAT
TTTGAGACTCATTTGGATTTTTCAATTCCTAAATGCTGAGTATACTATCA
AGGTAACAGCTTTGAAATTGTAGCAAAGGTACCATTGTctaggctgcgcg
catccccagaatttattttgatatattatatcaaatcatatcagagtgGA
TATATGCAGCCTAACCATTGTCCAGAAAGTAAAGACACAAAGCAATGGAC
AAACTTAGTTGCGTCGAACATGAAAAAATCTTACTAAAATCTTTCTGGCC
ACTGATTAGAACAAGCCAAAACCGTATTCCTTTCTGCATTTCCTTTTTTT
ACGGGCAGAAGTTTCCCATTTTATTTCAGACAATTGGTGATAATTTACAA
GGAGCCATCAattgtattttattttgttgCATGACACCGGTTGTCCGAAA
ACGAATCAACAAATCAGTCACGAGCATGCGCAGACAGAGATTTCATTTGT
ATGATCATTTGGACAGTACCTCGGATACTTCTTCCAGAATATATCAACCA
ATTGATTGAGGAACGGGTAAATCACCGATAATCTGTAATTTCAGCTTCAT
ACAATTTTCTAGGTTCCCAAATTACAAAAGCAGTGAGTTTATGCATTTCC
CATTTTAACAACTTCTGTCTCTAAAATTTGAGACAGTAAAAGTGCCGATT
AACAGTTGTTTTTTCCCGGACTGGATGTAAATTAATCAAAAACTAACAGT
CGTTAGTAATCATGGGACTAATATAGGTAAGGCTGTTGGTAGCTGTCGGT
GTAAATGAGAATCATTGTAATGTCTTTCAAATATACACtacagtagactc
ccggttattcgaagctccAAGGGGGACCGGAAGCTCGAATAGCTGAAAAA
ATTGTTTCCTGCCTGATTTTTAACTTAACCTTAAATGGGATGGCATTTTC
TGAATTAAGGCATTTTGGGTTCAGGAAAGTTTGCCAAGATGACTTTTTAC
TTTCTGAAAagtttcggtgtttgaagaaaaaaagtaatGGTATTTCGGTA
TCAAACATGCCTTGGATCTTAAGCATTTTTCCTGTCGATGTTGAATGTGA
TCCATGAAAAATGCATCGGTATTTTCGGTGCTCGCAGCCCCCTTTACGTA
TGTCCATATTTAGGTTTATCTATTTTCAGATGATCGTAAGCGATTATTAG
TTAACAATTATGCGGATTTAGTAATAACGAGTAGAATTTTAAGCATGTAT
TATCAGTAATTTATTATTTCCAAGTAAttattaaggaataagtgtaaAGA
GATTTTAATGAGAATTTAATAAGAAtcatttgtaaattttgaaatagaCA
TTTTTTAGAAGAATAAAGATGCCATATATGATAAAGTTATGATTTCTTGA
ATAGGGTTTCCAATGATAAAaggttttgtttctaaataagagtgatatcg
tttgcttactcatcaattttaattcacaagctttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033069XLOC_033069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052256-exon-scaffold_213-1491911889:684315..684410TCONS_00052256-exon-scaffold_213-1491911889:684315..684410Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1510915933:684315..684410TCONS_00052256-exon-scaffold_213-1510915933:684315..684410Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1575043694:684315..684410TCONS_00052256-exon-scaffold_213-1575043694:684315..684410Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1491911889:684530..684654TCONS_00052256-exon-scaffold_213-1491911889:684530..684654Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1510915933:684530..684654TCONS_00052256-exon-scaffold_213-1510915933:684530..684654Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1575043694:684530..684654TCONS_00052256-exon-scaffold_213-1575043694:684530..684654Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1491911889:684854..685063TCONS_00052256-exon-scaffold_213-1491911889:684854..685063Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1510915933:684854..685063TCONS_00052256-exon-scaffold_213-1510915933:684854..685063Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1575043694:684854..685063TCONS_00052256-exon-scaffold_213-1575043694:684854..685063Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1491911889:685794..686901TCONS_00052256-exon-scaffold_213-1491911889:685794..686901Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1510915933:685794..686901TCONS_00052256-exon-scaffold_213-1510915933:685794..686901Clytia hemisphaericaexon
TCONS_00052256-exon-scaffold_213-1575043694:685794..686901TCONS_00052256-exon-scaffold_213-1575043694:685794..686901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:684315..686901 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160544	0.038154	0.338337	0.213347	0.319579	0.67635	7.24571	6.86726	6.15469	4.82509	3.99577	7.64181	3.84077	3.32959	2.46335	2.61983	2.72743	2.45776	2.43657	1.75261	2.3796	2.40861	0.481924	1.68471	0.754389	1.20207	0.919245	1.58824	0.706347	1.06257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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