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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052253 ID=TCONS_00052253|Name=TCONS_00052253|organism=Clytia hemisphaerica|type=transcript|length=805bp
ATGATAAAGCTCTCCATCAAAGAGATGAACACCTTTAAACAAAATGGTCT
ATAAAAAGGTAGAAATCTAAGTATGGGACTTAAAAAAATAGTGTAACTTA
GAAACAACAATActcaaatcaaagatgaagTTTTCATTAGCAATAATCGC
TATCTGTTTTCTCGCCAGCCAATATTCAACCGTCGTGCAAGgtaAGCCAG
TGGATTGCAGTCAAATGGCAACGTTCGTGGTATGTGATTCAAATGGCAAC
AAACATCTaaacttttgttattttgatcaAGTACTGAAAACCGCTGGTAA
CGAAAAACTAACTATCGTGCATTTGGGTGATTGTGTATCGTAAAAGATTG
ATTCGAATCCTGCAGACGGAGTTACTTTGATTTTCAGTTAACATTATCTC
AATTATTGAAAGCTGAAAGCTGAAACTGTCTAAATTTCAAGACATTGTAT
TGagttatatctttttttttcaagatattATATTGAGCTATATCTTTTTA
CCTCTAACTTTTCGAAAACTTACCCTCTTTAACGCTAAGATGAAGGTTAT
AAGGACAGCAggttctctctaattcgatgttctTCTATTCATACGCTCTG
TTCATTACTTAATAATATtcaaagtcaccgtcaacaagaaactctacTAA
CCGACGCTCTACGATTCGATATGCCTCCCTTATTCGACGAAAACAACTGT
AGTATTTTCTCAACTGAAGAAAACCAGCAATAATTTTCTTTCGTAGAAAA
ATACACTTTTCTTTGCATTCCCAAGCCGTGAAACATTACACCAAAATATG
GGACC Run BLAST on NCBI transcript from alignment at scaffold_213:678613..679858+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052253 ID=TCONS_00052253|Name=TCONS_00052253|organism=Clytia hemisphaerica|type=transcript|length=1246bp|location=Sequence derived from alignment at scaffold_213:678613..679858+ (Clytia hemisphaerica)
ATGATAAAGCTCTCCATCAAAGAGATGAACACCTTTAAACAAAATGGTCT
ATAAAAAGGTAGAAATCTAAGTATGGGACTTAAAAAAATAGTGTAACTTA
GAAACAACAATActcaaatcaaagatgaagTTTTCATTAGCAATAATCGC
TATCTGTTTTCTCGCCAGCCAATATTCAACCGTCGTGCAAGGTTAGTTGT
CCTCGCTTGTacctaactttttgagtttcaagcctaataATTTTCTTTAC
AATATTCGTAAATTGACCATTTTGATAGtattttttcttaagaaatcgag
tgaaaagagtccacaaagccttacaatgttcttgacttgttcttaatatt
ttgaccatcaaagccttgttcttatgtagttttttttccttaaaaagacG
TGTACTGAACAAAACAACACCCGGGGGGAGGGGAACTTGAGCAAAAAGGG
GAACGGGGATGTACCACTGATCAGAGTACgggtcactttttgaaaaaacg
agtgCCACATAGGGTTtatttttcgaacttcagccgcacatccccgtcgg
tcggcaagaaTAGTACCCCCACCGGGAAAAAATGGCCACTAACAAAATAA
ACTGTCCcattaattcaattttcaatttcaaggtaAGCCAGTGGATTGCA
GTCAAATGGCAACGTTCGTGGTATGTGATTCAAATGGCAACAAACATCTa
aacttttgttattttgatcaAGTACTGAAAACCGCTGGTAACGAAAAACT
AACTATCGTGCATTTGGGTGATTGTGTATCGTAAAAGATTGATTCGAATC
CTGCAGACGGAGTTACTTTGATTTTCAGTTAACATTATCTCAATTATTGA
AAGCTGAAAGCTGAAACTGTCTAAATTTCAAGACATTGTATTGagttata
tctttttttttcaagatattATATTGAGCTATATCTTTTTACCTCTAACT
TTTCGAAAACTTACCCTCTTTAACGCTAAGATGAAGGTTATAAGGACAGC
AggttctctctaattcgatgttctTCTATTCATACGCTCTGTTCATTACT
TAATAATATtcaaagtcaccgtcaacaagaaactctacTAACCGACGCTC
TACGATTCGATATGCCTCCCTTATTCGACGAAAACAACTGTAGTATTTTC
TCAACTGAAGAAAACCAGCAATAATTTTCTTTCGTAGAAAAATACACTTT
TCTTTGCATTCCCAAGCCGTGAAACATTACACCAAAATATGGGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052253-exon-scaffold_213-1491911889:678613..678803 | TCONS_00052253-exon-scaffold_213-1491911889:678613..678803 | Clytia hemisphaerica | exon |
| TCONS_00052253-exon-scaffold_213-1510915933:678613..678803 | TCONS_00052253-exon-scaffold_213-1510915933:678613..678803 | Clytia hemisphaerica | exon |
| TCONS_00052253-exon-scaffold_213-1575043694:678613..678803 | TCONS_00052253-exon-scaffold_213-1575043694:678613..678803 | Clytia hemisphaerica | exon |
| TCONS_00052253-exon-scaffold_213-1491911889:679245..679858 | TCONS_00052253-exon-scaffold_213-1491911889:679245..679858 | Clytia hemisphaerica | exon |
| TCONS_00052253-exon-scaffold_213-1510915933:679245..679858 | TCONS_00052253-exon-scaffold_213-1510915933:679245..679858 | Clytia hemisphaerica | exon |
| TCONS_00052253-exon-scaffold_213-1575043694:679245..679858 | TCONS_00052253-exon-scaffold_213-1575043694:679245..679858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:678613..679858 + |
Blast
The following BLAST results are available for this feature:
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