TCONS_00052359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052359
Unique NameTCONS_00052359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052359 ID=TCONS_00052359|Name=TCONS_00052359|organism=Clytia hemisphaerica|type=transcript|length=513bp
GAGTTTTTTTGAAGTCTTTGGCGTTCTCTATATTTTTTACCGAACGTCGA
ATCTGAACGTTGCTCTTCCCCAAGGAGTTTCGTTTTCCTGGACATTTGAT
ATTTGTGAGAGTATATAAATATGTGTGCTTTCCATAATGAAACATATTCT
TCAAAGACGATATTATCACGCGAAGAAACTCTTCTTTGAATCAAGACTGA
GAGGAGAAAAAATATCTCCAAAATGAAAGGACACGCCATAATTTTGATTG
CAGCTTTTTTCTTGGCAGTACTCTCGCTGGCTTATGCGTCAGACTGCAGT
GTTCATGGTATTTCAGAGATTTGCGGATCAGATGGGAAAACCTACCAAAA
TATCTGTTACTTCTTCGAAGCTAACGTTGGCAATGGAGTGACCATCATCA
GCCAAGGTCCTTGTTGATTAAAGAAAACTGATACTcgaaattttatttgt
aaataacACAATGATAACgtatattttttttgataagaaaatCACGAAAC
TGCTTTAAAAATC
Run BLAST on NCBI

transcript from alignment at scaffold_213:672636..673836-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052359 ID=TCONS_00052359|Name=TCONS_00052359|organism=Clytia hemisphaerica|type=transcript|length=1201bp|location=Sequence derived from alignment at scaffold_213:672636..673836- (Clytia hemisphaerica)
GAGTTTTTTTGAAGTCTTTGGCGTTCTCTATATTTTTTACCGAACGTCGA ATCTGAACGTTGCTCTTCCCCAAGGAGTTTCGTTTTCCTGGACATTTGAT ATTTGTGAGAGTATATAAATATGTGTGCTTTCCATAATGAAACATATTCT TCAAAGACGATATTATCACGCGAAGAAACTCTTCTTTGAATCAAGACTGA GAGGAGAAAAAATATCTCCAAAATGAAAGGACACGCCATAATTTTGATTG CAGCTTTTTTCTTGGCAGTACTCTCGCTGGCTTATGGTAGGTCCAGTGTA TTTGTCTGTAGGAATTTTTTTTCTTGTACATTTAGCCCATCTTTTGGGAA TTGGGTACAAATTTTTTTAACCAATTTTACACCCCTGTGTCACAGTCTCG GTGGAACTTTTCCCACAGTGGGGGGGGGGTGAACATTTCTTTTGAAATCC CAATGGGAATAGAAATTCTATTGTTTCAAGGTCAAAAAATCCAGTGAGGA TGATTTTGGAGTGTTTTTTTTTTAATTGAATTTCAAATGAGGAGGAAAAG TTTTCCAGTGGGACTGAAATTGTTGGGTATTTTTCCTACCGGGGACAAAA TTTTAGCCACATTTTCCTGCGGGTAGGGGGTTCCACTGAGACACGGTGCA ATTTTTTTATCGTGGTTGGATTGAATTACGAGATTGACAAGAATTACCTA AACCAAAATGAACCTCGTTGTTCTTAAAATTTTTAATTTTTAATTTTGCT TATGAAGTTTCTTAAGGAAGTTTGAGGTCAATTATGAATAATGAAAAGCG TCGAATAAGAGTGCGTCAACTGCATTTGAAAGAAATTATTTTTTTTGCAA ACTTGAGGCTTCAGAAACTGTGACTGTTTGAAATTTTTAACAGGTGATTT TAACTCAGATAAAGAATTAAAAAATAATAGCCCTTCAAAATTCTTTATTT CAAAAGTTTTTTTCTCGTTTTCAGCGTCAGACTGCAGTGTTCATGGTATT TCAGAGATTTGCGGATCAGATGGGAAAACCTACCAAAATATCTGTTACTT CTTCGAAGCTAACGTTGGCAATGGAGTGACCATCATCAGCCAAGGTCCTT GTTGATTAAAGAAAACTGATACTCGAAATTTTATTTGTAAATAACACAAT GATAACGTATATTTTTTTTGATAAGAAAATCACGAAACTGCTTTAAAAAT C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033102XLOC_033102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052359-exon-scaffold_213-1575043694:673551..673836TCONS_00052359-exon-scaffold_213-1575043694:673551..673836Clytia hemisphaericaexon
TCONS_00052359-exon-scaffold_213-1575043694:672636..672862TCONS_00052359-exon-scaffold_213-1575043694:672636..672862Clytia hemisphaericaexon
TCONS_00052359-exon-scaffold_213-1510915933:673551..673836TCONS_00052359-exon-scaffold_213-1510915933:673551..673836Clytia hemisphaericaexon
TCONS_00052359-exon-scaffold_213-1510915933:672636..672862TCONS_00052359-exon-scaffold_213-1510915933:672636..672862Clytia hemisphaericaexon
TCONS_00052359-exon-scaffold_213-1491911889:673551..673836TCONS_00052359-exon-scaffold_213-1491911889:673551..673836Clytia hemisphaericaexon
TCONS_00052359-exon-scaffold_213-1491911889:672636..672862TCONS_00052359-exon-scaffold_213-1491911889:672636..672862Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:672636..673836 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.350109 0.227608 0.264274 0.258551 0 0 0 0 0.885091 0 0 0.544065 27.3983 24.5038 4.04234 7.53825 7.97238 3.50204 121.701 95.8055 25.8393 24.6016 25.29 31.9945 28.3176 28.5157 2.24032 2.56171 23.1861 53.7126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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