TCONS_00052418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052418
Unique NameTCONS_00052418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052418 ID=TCONS_00052418|Name=TCONS_00052418|organism=Clytia hemisphaerica|type=transcript|length=291bp
attttgagaattttaaaacTTATTCTATTTGCCATAGATGGACCTAATTT
GTGCGGTATGTGAGGAATTAGCGGAAGGAGCTCCTTCCTTTTTTTGTGAC
TACTGTCAGAAATGGTTTCACCATGAATGCAATATCCCTTTCTCAATAAA
CTATCCACAAGTCGGATTATGCGTTAACTGCAACTGCGATCTTTTCCCTT
TTAGTATTTGCTATGAGCttgatgaaaaaagtttcaGGTACAACTACTTC
CACCCCTCATTCTCTGATTTAACCACGATCGAAGAAATTCG
Run BLAST on NCBI

transcript from alignment at scaffold_213:511669..511959

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052418 ID=TCONS_00052418|Name=TCONS_00052418|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at scaffold_213:511669..511959 (Clytia hemisphaerica)
CGAATTTCTTCGATCGTGGTTAAATCAGAGAATGAGGGGTGGAAGTAGTT
GTACCtgaaacttttttcatcaaGCTCATAGCAAATACTAAAAGGGAAAA
GATCGCAGTTGCAGTTAACGCATAATCCGACTTGTGGATAGTTTATTGAG
AAAGGGATATTGCATTCATGGTGAAACCATTTCTGACAGTAGTCACAAAA
AAAGGAAGGAGCTCCTTCCGCTAATTCCTCACATACCGCACAAATTAGGT
CCATCTATGGCAAATAGAATAAgttttaaaattctcaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033143XLOC_033143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052418-exon-scaffold_213-1491911889:511669..511959TCONS_00052418-exon-scaffold_213-1491911889:511669..511959Clytia hemisphaericaexon
TCONS_00052418-exon-scaffold_213-1510915933:511669..511959TCONS_00052418-exon-scaffold_213-1510915933:511669..511959Clytia hemisphaericaexon
TCONS_00052418-exon-scaffold_213-1575043694:511669..511959TCONS_00052418-exon-scaffold_213-1575043694:511669..511959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:511669..511959 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.976181	0	0.581335	0	0.554221	0	0	1.79984	0	0.287097	0.286698	0.297738	0.244781	0.788063	0	0.663379	0	0.959045	0	0	0	0	0.462831	0.413066	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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