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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052227 ID=TCONS_00052227|Name=TCONS_00052227|organism=Clytia hemisphaerica|type=transcript|length=3152bpRun BLAST on NCBI protein sequence of TCONS_00052227-protein >TCONS_00052227-protein ID=TCONS_00052227-protein|Name=TCONS_00052227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=811bp MKHPTSFSINSMVKCVLMVVTFNIIALSITDGLPGQKRVYLTPTGREKVKRun BLAST on NCBI transcript from alignment at scaffold_213:175249..184513+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052227 ID=TCONS_00052227|Name=TCONS_00052227|organism=Clytia hemisphaerica|type=transcript|length=9265bp|location=Sequence derived from alignment at scaffold_213:175249..184513+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:175249..184513+ >TCONS_00052227 ID=TCONS_00052227|Name=TCONS_00052227|organism=Clytia hemisphaerica|type=CDS|length=29232bp|location=Sequence derived from alignment at scaffold_213:175249..184513+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052227 vs. Swiss-Prot (Human)
Match: FURIN (Furin OS=Homo sapiens GN=FURIN PE=1 SV=2) HSP 1 Score: 449.514 bits (1155), Expect = 4.080e-142 Identity = 240/554 (43.32%), Postives = 323/554 (58.30%), Query Frame = 3
Query: 522 RQFYTNTWAVKVDPPSKEIADTIAKKHGFINIGKIGNQDGYFHFKHVETSSKIEKRDHIKTGLLTNEKEVLKATQQKVLERFKRDGY--PTDPEFKKMWYLHNNGQGHSPGGVDLKVSNVWKQGYTGKGIVISVLDDGLDHTHPDLQPNYDEKASCDLNDNDEDPMPRDTDP-DNCHGTRCAGEAVAAANNSICGVGVAYNAKVGGVRMLDGQATDALEAAALGFKNDHVDIYINCWGPKDDGKTFGKPGPIATNALKKAAIEGRDKKGNIFVWATGNGGLTDDDCNCDGYTTSIYTISIGCIGDHGTSAYYTEKCSSTLAVTFNGASHREGRENPMVTTDLYHGCTEEFKGTSASAPLAAGVIALLLESNPDLNWRQVQDAIVRSAQITSPVDDGWKRNGADFHYNLKFGFGRLDAEELVKAAKNMKPLGNHVKCVIAKNNEKANIPSKAGAIRFSARATECLEDEDDADVKRGMPERLEHVVLTVSFVHKRRGDVSVKLFSPAGTESEMLSTRKYDDSTEGLDKWNFMSVFYWGETDHKKGSWHVVVANNPE 2174
++ +TNTWAV++ P +A+++A+KHGF+N+G+I Y+HF H + + + L E +V QQ R KRD Y PTDP+F + WYL Q DL V W QGYTG GIV+S+LDDG++ HPDL NYD AS D+ND D DP PR T DN HGTRCAGE A ANN +CGVGVAYNA++GGVRMLDG+ TDA+EA +LG +H+ IY WGP+DDGKT P +A A + +GR G+IFVWA+GNGG D CNCDGYT SIYT+SI G +Y+E CSSTLA T++ + E + +VTTDL CTE GTSASAPLAAG+IAL LE+N +L WR +Q +V++++ + W NG + +G+G LDA +V A+N + KC+I E +I + + T CL + + RLEH ++ + RRGD+++ L SP GT S +L+ R +D S +G + W FM+ W E G W + + N E
Sbjct: 27 QKVFTNTWAVRI-PGGPAVANSVARKHGFLNLGQIFGD--YYHFWHRGVTKRSLSPHRPRHSRLQREPQVQWLEQQVAKRRTKRDVYQEPTDPKFPQQWYLSGVTQ------RDLNVKAAWAQGYTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYNARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQ---IVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVAPQRKCIIDILTEPKDIGKR---LEVRKTVTACLGEPNHI-------TRLEHAQARLTLSYNRRGDLAIHLVSPMGTRSTLLAARPHDYSADGFNDWAFMTTHSWDE--DPSGEWVLEIENTSE 556 The following BLAST results are available for this feature:
BLAST of TCONS_00052227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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