TCONS_00052187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052187
Unique NameTCONS_00052187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052187 ID=TCONS_00052187|Name=TCONS_00052187|organism=Clytia hemisphaerica|type=transcript|length=1535bp
CTTAGATTATTGTAAGTGCACAATATGAAAGAAAGGAATAAAGGATGTCT
TGCCAAAATCCATTCGACACCTCCATCATTCTGATACCTCAAGACGAAGA
TGGAATTTGTTTTTGTGGATATATCATTATTGCAGTTGGATTGTAGCTGG
GATGTTTCGCAAACACTTAAAGGGTACGAAGAAGCTATTCAGAAGGTAAT
NTTGTAGCTGGGATGTTTTGCAAACACTTAAAGGGTACGAAGAAGCTATT
CAGAAGAAGCTCAATCAAAGCTCATCAATCCACGAATTTTTGACAGAACT
GAAAGCTCTTGTGGAAAATATCACCTCTTTCTCATCTTTGAATGACCGCC
CAGATGACATTGGCTCACATCAACTTACGGAGATTTTCCAAGAAATTGAA
CAGATAGGCTGGGACAAgtTGGTTTTCACTGACAATAATTTCGGGACTTT
GAAATTTGTGCACTGTGACAAAGAATCGAGAGAGCATATTTTGGTTCTTG
AAAGACAGGGTGCTTTTTCCGATTTTGTTGCATCGACAAATCTTCCTGTA
AACCTACAACAGAAGaaaaatGAGAAGATTCTTGTTAAATACAATAAATT
CGTTAAGATAGTAGACAAATGTCAATTATTTTGGAATGTTCTAAAGGATT
TGGACGAAGAATGTTGGATATTGGAGCCTGAAGTTCCATCATATGATTGT
CAATATCGAAGAATTGCACTCGGTAAGAATGCTTCATTGAGAATCGATGT
CAACCCACTGCAACCGTCCACCTTCCCAGAATGCCGTTTCCTTGGTCCTT
CTACTGttaTCGATCCattaaagcaaaatttgaataaacaCATGCACCTA
TGGGACGATCAGAAAGATTTGTTGGACAATTTACGAACAGTACTTGACAT
CGAATTCCCATCGAAGACAACCGTGGAAATCAATGAATTACGTGTTGAAT
GTGGTATTTGTTATGCATATCAACTGGAGGACGAGATTCCTGATAAAAGT
TGTGAAGATACAAGATGTGCTCAAACTTTTCACTCATCATGCTTACTTGA
GtGGATGCGATGTCTTCCCTCATTCCGTCAAAGTTTTAATGTAGTTTTTG
GTCAATGTCCATACTGTGAAAAGAAATTGACCATCAAATTGAAGAAATGA
ATATCGATTGGGTGAAAAGGAGCGAAAATAAAGATTGTAGCTCGGAATAT
TACGGGCAAACAAAATTGTACAATAATTAATAATGGGTATATTTGTGGAA
CTTATTTTCTATTGCGATGGAACTATGGTATGGAGTTGTTCAAGATGAAT
ATGCTAGCTATGTAGAGGAAAAAAACTTATNcacaggaaaaaattattga
ttcccTAGCCTAGGGATTGTTCATTTTCAGATGTGTTTTTTTATTCGATC
ACATTAGTctagaatttaaagttcgggaaAGTAAGGAACTTAGGGAAACC
TATTTTCCTATGCTGGAAGTGTATTACCAATGTGTTAGTGAAAACGGATT
TCCACATGTggaaaactaatatttttaacattCTA
Run BLAST on NCBI

transcript from alignment at scaffold_212:45667..61087-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052187 ID=TCONS_00052187|Name=TCONS_00052187|organism=Clytia hemisphaerica|type=transcript|length=15421bp|location=Sequence derived from alignment at scaffold_212:45667..61087- (Clytia hemisphaerica)
CTTAGATTATTGTAAGTGCACAATATGAAAGAAAGGAATAAAGGATGTCT
TGCCAAAATCCATTCGACACCTCCATCATTCTGATACCTCAAGACGAAGA
TGGAATTTGTTTTTGTGGATATATCATTATTGCAGTAAGTATATTGAGCA
AAATCATTTTTTTGTCCAAAAACCTTTAGAACTTTGAAAACCTTCTAAAA
TGATGAATACAGGATTATCTTTTTTATTGAAATATATCTATTTTTTCAAT
ACTTTAAGTTTCTTATTTTTAAAACACATGGGCACCGGCGAGCCATTTTG
AGTGAGGGGGCCAAATATTTGGAAAAAAATGTCGCCCACCATGGTTGGGC
GACAAATAAAATTTGTCACTTTTTACACCCTCAAAACACCTTAAAACGAT
ATATATTTGGGGAGAATAATAGTTTTTGTGCTTTCATTTGGTCTCAAACC
AAATTAAAATGGTAACTCTTAAAAACGTATGACATGGTCTTCCAAAAAGG
GGGGGGGCCATGGGGCCCCATTGTAGTAAGTGCTCTGAGTTGACTTTTCA
ACGATATATACAGGAGTGTTTAGAAAATTGAACATTTCTTTCATTATTCT
CTTTAGAACAAAGATGAGTTTAGAGTAAACATACACCTCAAAGAAAAAGG
TTCTCTGAAAGATGCAAGGTCAGATTCTTATTTGGAGTATGATGATTATA
TCTATCTATAGCGCCAACAATAGCTCCTATTGAAATTTAAGGTGGTCTGG
CTTATTTAGTAAAAACTTGTCTTCATATTTTGAGTACATTGTAATTTTAA
TCATTCATTTAGGTTGGATTGTAGCTGGGATGTTTCGCAAACACTTAAAG
GGTACGAAGAAGCTATTCAGAAGGTAATNTTGTAGCTGGGATGTTTTGCA
AACACTTAAAGGGTACGAAGAAGCTATTCAGAAGGTAATTTGTTAGCATT
ACCTACAGAGGCCGAGAAGGGTCTCCATGTGAGTTCTTTTAAAAATTGTC
GAGATCTTTAAGCTGATGAGTCAAGATTTCTTTCAAACTGTTCCACCTCC
AGAATGTGTCGCAAAAACATGGTTTCAGCCCACTTTTCAGGTGCCCCTGA
AAAGCATGGTGCTCCCAACGAGTTAGGTCCCCTTGAAAAATTGCTTTGAG
TTAGGTACCCCTATTCAGCAGATAATTTCTTTGAATTGACACTTTTTGTT
CTTTTGTCATTCCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAT
AGCAAAAGATGGCGTGATGGGAAACAAAAGAAAAATTGGATGGGAAACTA
GGTGCTAGGATAAAAAAATTCAATAATTTGAAATATTTTGAAATATTCGA
TTTGGAAAATATTACCAGCCTCCAGAGCCTCCATCAAGACAGCTAGGTAC
CCTTAATGAATAGGTAACCCCAAAGAATTGCAAGGCATTAGCCCCCCTCT
ACTAACTTGGCCTAGGTGCCCTTCAGATTTCTGGGGGGGGGCTGATACCA
TGAAAAACATTTGCTTTCCCAAAAGCTGTCATATTTCCTAGAACTGCTGC
GTTTCCAAAATCTAAACTAAACTACCACTTTTTCTTGATGTGATCAGAAG
ACCTAAATTAATTATTCTTTTTAACAATGGTAAAAAAAACTCAAAAACTG
AATTTTGTGGGAATAGACGATATCGGCTTAACATGAAAAGTCAGATTTGA
CCTCCGAGAATCCCTCACAATGCGTTGCGTGGAAAAAAGTTTGCTGTGAA
ATATTTTCCACGCAAATCATTGTGGGGAATTCTCGGGGGTCAAATCTGAT
TTTTCATGTTAAGCCAATATCGTCTATGAATTTTTTCATTGTTAAAAAAT
TAGATCCCTAGGAAAGGTAGATGCATGTATATTTCATTTTACTAATGATT
TTAACACTCATGATATATATACAATATCTTCAAGGACCCATTAGCTAAAT
TGGTTGTAATTGACGTAAAATCAGTCAATAGACATTTTAATGGTGTATTT
CATGAATTTAAAAGGATGAATGAGCCAGTGACGTTTAACAAAATCTTTTC
TGATCTCACTTTAAACAATACTATAAACAATACAAAATTTGGCCCAAATG
GCGAAAATTTACCGTAAGGCTGGACTTAAAAAATTTTTGGTTTGCCGTCA
CCCGACCGACCCTACCTCGAAACCTGCCGACCCAAAAAATTTATTGCCAT
TTTAAATAAGATTTTTTTTCCTTCAAAAACTTCAAACAATAAAAAATCAA
AACTCGCATCTTGTTTGTCTCAAGCATAATTTCCCTGCTAGCACTTCTGT
TTTTTATTCAAAATTTCCTAAATGTAAACAAACTGTTAACCCTTCCATGG
ACGAAAATTTCATAAATCGCCAAAATAAAAAAAAATTCCGACCGACCGAC
CCACCTCCAAAATCTAGGGTCGGGTGATGGCAAACCAACAATTTTTTAAG
CCCAGCCTAATTCGGTCTAATGTCGACATCCCTCATCTAACTCTGACACC
CTTTTTATCAGTTGAAATTGATAGAAAGGTCAAAACTATTTTTCTTTGCT
TAGTGGTCAGAGAGGAATAATCCTCTTTCAATCAGTGATTCAAACTTTCA
TATTATTCCTGTCTCTAAAGAAGGGTGTCGGAATAACACGAGGGATGTCG
ATATTAGACCAACTTACGGTAATACCACAAAATGTAACTTTTTCTCTTTT
TTTCCGACTGCAAACATTAGTTCTCTCCGGGTTCCTTCCAATCAGAAAAA
ACTTATAATTGAATTTTTGTCTGGATAAAAGATTTCGAGGATGTTACCAA
ATTTTTCGTTCAATTTGTTGTTGTTTAAAATGATGCGACAGATTGAATAT
TAAAGCAGCTTGAACACGACAAAACATGCAATGCAGGGTAAATGCTAATT
TTTTTGGTGGCCAGGTTTCAAGGTAGGGTCAATCGGATAACAGCAAGCCA
ACACTTAAATCTAGTCTATCTCTTATTCAAGCTAGAAAATTATACCCTCT
GTTAGTCAAGTATTTCTACAATTGAAATAAATTTCATTGTCCCATATATA
GATCGAATAGCTAAAAAATAATTTTTTTATTGAAGTTCCCAATTCTTATA
TCATCATAGAAGCTCAATCAAAGCTCATCAATCCACGAATTTTTGACAGA
ACTGAAAGCTCTTGTGGTAAGTTATTATTTTTTTAATAAAAAAGGAAAAA
ACAAAACTTTTAATTTGCCTTTCTACTTTTGCCTCTTGTATTCGCTTTCT
CAACCTTTCAGATGTCTGATTTTAAAATACCAAGGAAAACTTTAAACATG
ATGGGTTTCAAATTAAAAAAAAAACACTTTAAAACAGCTTATCATAACTG
TCCCTATCGATGCGATACATAGGCTGTGCACATCCCAAGAATTGATTTTG
ATATAGGGATGCGTATCATGTATAAAAACACACGACACATGTTTTGATTG
CAATGCAAAACTTTCCATGAGTTATTTTCTTTACAGGAAAATATCACCTC
TTTCTCATCTTTGAATGACCGCCCAGATGACATTGGCTCACATCAACTTA
CGGAGATTTTCCAAGAAATTGAACAGATAGGCTGGGACAAGTAGATCAAA
TTTTTATGAAATATGAATTTAGAATTTAGGCTATTTTGCTATACTAAACA
CTTAACTTTAAGGTGTTCCTAACAAATTAAAATTTACTCAAAGTTATGAC
AAAAGATTGAAATTATTCAACTTTTCTAAAAAAGTAGTGCACGCCACTTT
TAATACAATACAATTTTTTTCAGGTTGGTTTTCACTGACAATAATTTCGG
GACTTTGAAATTTGTGCACTGGTAATTATAATTATGATTTTCACTTACCA
AGGCTCATCCAATCCCGGGACCATTGCGTTTGAAGTCAAGAAAGAGAGGA
ATCTTAACCTTTCTCAAGTAAGAAAAAGTGAAGCCTTGTTTGCCTCACAT
TTAGGACTTTTTTTGAAAACACGCGGTTCACGTGTTTTGGATGGGAAATA
AGCTGCTTTATTTCCCATCCAAGAGTTTCGGATCCAGCCCTTTTGCGGCT
TTGAAATCAATGGGGTGTACTGCCCTTGTCGACCAACAGGGCGTGCTGAA
GTTCGACAAAATAGACCCTACGTGGGACACGTAATTTTGAAAATTTTACC
AAAATTTGCGTAAAAGGTGACGCTGAATTGGACTAAAATTCCAAATATTC
TTAAAATTTGGGCATTCAACATGCTTTCCTTGTAGAAAAAAAGAAAGAAG
CCCGAAGGATTGAAAATGATATCTTGATCTTTCCTCAATCCACTTTTACG
AACAAGATTCATAAAAAGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGG
TGGAGGATATATTATTTTTTTCATGAATTACCCCTGGACATTTTGATTTT
TAACCCCCTGGACAAACNNNNNNNNNNNNNNNACAAAAAATTACCCCTGG
ACATTGGAATTTACCCCCTGGACATTGCAATTTTTTGGTATTTTTTAAAT
ACCCCTGGACAATTCATCCTCCACCCCCCCATGAACGGTTTTTTTCTGGA
AGAGCCCAAATGACGTTTTTAAAGATTCACATTCATTACATCGCGACAAA
TGGGGTTTCCATGTTTTGACGTCAAAGAATCGAACGTCAGAAAAGACGGG
GGTAAACATTCGAAAATATGTCAAAAAGAAGACAAGAAAAAATAATTTGT
GATTTTTCCTAAGTAACAACGCTTATTTATTCATTTTTCATACTTCTTTG
ATGAAAGAAGTATATATTTTTGAAAAGTAAAATACTTCGTCTATCATTTA
CTCTTTTTTGAGCTCTTTACTCCAAGGATTTCTCATTTTGTCAGCCGTTG
AACTTCAGTGCTTTTTCGAACAAAATTCTTAAACCCTCCTGTGTTCCAGG
GTTCGTAGAAAATCGTGGGCATTTCTTTATCTTGCTAAGGTCCATCTTTC
TTTGAAATTCAATCTTAGACCTTTCCAAAAATGTATAACAAATACAAAGT
TTCAGGTCTGCGATGCGGTGATTTTTCACTTTGAAAAACAGAGACATTTT
TCCTTGAATTCCCCTAATGTTTGTTTACATGTCAGGGAAAACCCGCATTT
AACAATAGNTGGTGATTTTTCACTTTGAAAAACAGAGACATTTTTCCCTG
AATTCCCCTAATGGTTGTTTACATGTCAGGGAAACCCCGCATTTAACAAT
AGCAAAAAATTTGGAGGTCAAAACATTCGAAAAGTATAATCAAAGGGCTT
TCCAAATATGTATAATGTTATGGGGTTTCCTTTTGAAGAATGTTGTGATT
TTCGAACAAGAAGAGATGGCATAATAAAAACTTTTCTAAAATCTAGATTT
TGACGTAAAGGGCATAGGGAATTTTAGCATGAGTATTTCTTAGTTTTTAA
TTTCATAAAGAGTTCAAAGCATTTAAAAATCCAAAACATATTTTACATTG
ATCAACAAAAGTAAATTAAACATCGAGCTGGGTTTGATTTTCAAACTAGC
AGCCTAATTTTCAAATATTACTGGAAAATAGTCTTACTGAATGAAGAACT
TCGAAAAAAAAATACCTTTTTCGCACAAATGGCCGACAGTTCACAGATGT
TTCTAGCTACTCATTCTTTTTTGCCATTTTTCATTTCCAAATTAAATAAA
AACTTACTGGTCATCCTTGGGAGTTTTTTATATCCAAAATTGAATCACCA
TTTGATAAGAATAAATTTTAGATAAATAAAGGCTGCCTTCGATAACTGAA
TTTTGAAGGCAGGAAAGTACTGTGAAAACTGAAGCAAACAACAAAGCATT
CCATTTTATACATACCTCTTTCAATCGAATCTCAATTTAATTAATTTTAC
AACTTTCCTTTATTCTCAAGTTTTATTTTTAAGAATGAGAGTAATAATTA
AAGCACGATCAGGTTTTATTTTTTGAAAAACTCAATGTGTTCTTTTCAAA
AGCCAAAGTCTCAAATGAAACTTTTTGTTTTGATTTTGATTGCAACATTT
TCGAATCTTTCGAATGCGTGACGCAATTTGATTGGCACAAAATAGAACGC
GCGCGAAAAAACAATGCAATGCAATCTTCTCTGAGATGACAAAAATCGCA
ACACCAATTTCGCGCGATGATGTTTGGCTGAAACCTTCAAAGAATTTTTT
ATATTTTATCTTTTAGTGACAAAGAATCGAGAGAGCATATTTTGGTTCTT
GAAAGACAGGTGAGCTTGAGACTTGCTCTACAAAAATCTATGTTTTAGGC
TCATAGGATTTAGCTTTCTTCATAAGTACCACCATGCAAAAAAACTTTGC
AAAAGGCAATTCTACAGAATCGTTTCTTTACTGTTTAAGATAATAATATC
TGTCTTTTCAGGGTGCTTTTTCCGATTTTGTTGCATCGACAAATCTTCCT
GTAAACCTACAACAGAAGGTAAAGCTCTAATTCATCTCTTTGTTATAAAT
TTGTTTCTATTTTTTGGTGATTGAAATTTTTAGAAGCATTATCGGCTGGT
GAAGAATTCCTGTTTTTTCTAAATAGATCCCTGGTGGATTCCCATCCAGT
GAATTCCCACCAAGCTCCATGGCGGATTCTTACCTATTATTTTTGCTATG
TTACGTATTTTTTATCAAGCTTTTTTTAGAGAAAATTCCAGAATGAAAAA
AGCCTCGAAATGCAATTTTTCAAATATTTCTTTTCGACCACGAAAATTAG
TTCCCGCGAAAATTAGTTCCAATAGGGTAGTAGGGGGAACATTGTTCGTT
TTTCTGAGGTCGCTTGATTTTTTTAGTCAACGCAGTTGTTATACATTTTT
GAAAGCTAAGGGGTAGGTAGTAGGGGAATCAAAATAACTTGGGTGCCAAT
TTTTTTTTCGGACACTTTGGTGTGATTTTGGGACAAATATTACGGTCTCA
GGTAAAAATCATAGGGTCAAAAATTTATGAAAATTTTAGCTTGAGAAAAC
GGAAACTTGTTGTATACTTTTGGAAAGCTTTAAAAATAGTAAGATTACAG
ATGTATTGCAAGTATAGGTGATTTCTGTACCTAACTCGAGATATCAACCC
TTAAAAACAGTGTTTTCAGCCAGAAACAGCTGTTTTGTCCAGTTTTTACG
CTTTTTGGAGCTCAATATCTCAAGTTAGGTACTGAAATCACCTATCCCCG
CAATATATTTCTAATCTTAATTTTTTAAGAGCTTTCCAAAAATATACAAC
AGGTCTCTATTTTTTAAAGCTAAAATTTTCATTAAATTTTGACCCTATAA
TTTTTGCCTGAGACCGCCATATTTGTCCCAAAATCACATCAAAGTTTCCG
AAAAAAAAATGTTATTTTGATTCCCCTACCCCTTAGCTTTCCAAAAATGT
ATAACAAGTACTTCGGCTAAAAATATCGAGCGATTTTACAAACTTCCCCT
TACTAATACCCATTTTAATCATATTCTCTTTTCCAAAATGACAATTTTTC
GAACCCTAGGCAAACACGCCTGTCTCCTCCGTTCATGGCAATTTTTTTGC
GTTCTACCCTCTTTCATTGGATACCTCAGTTTATGCCTTCATTACTTACT
CTTGTATGTCTACTTTTAGCTGATTGACTTGTTCGATTGACTGAAATTTG
TCCCTGAAGACTAATTTGTCAAATAAAAGAGAATAATAACAGAAACAATT
CGTTCCCATGATTATTTGGTACTTTGCAGACCTGTCTGTAAAATACACGT
TGATCACCTGCTGGAACTGAGGAACTACTGGAGCTTTTGACTTTCACCAG
TGATAGATATTAACCATTTAAAATTTACCTAAAATACTCACAGCGTAACC
GCTCCTTCAATTTTGCTTAAATTTTGTCTGGAAGCTTGTATTATCAATAC
TTAACTCTTTTCAAGTAATTAGCATTTACCAATTACTAGATACAGTATCC
TAGGGCCTATTTAGATAAAAGAGCAATTTAGGCCGGTCTGTGAAATACAC
GATACCAACAGGTGTCAAGAATTTATCCTGAGCCCCAATAATGCATGTCA
CGTACGTGGAGTTGCCTCACAAAATTTAAGCAAAAAAATATAAGTGAATA
AAGTTAGAGGGGGGTCATGTTTTCGGTATTTTCAAAGAGTGACGTCATCA
ATGATGCCAAAATTTTAACAAAAGATGCCAATTATTTGGTGAACACTCAG
GCACACTTTCTAAAAATCGAATCAATCGGATAAATATTTCAAAGATTATC
AAAAAATTCGCCTTTGGCTTCTTTGTTGAATAGAAGGGTTAAAAGAAATT
CATCTTTTTATCTTTATTTATTTTATTTTTTTCTTCAGAAAAATGAGAAG
ATTCTTGTTAAATACAATAAATTCGTTAAGGTAAAATACTTCTATTCTGT
ATTTTCCAGTAAAGTCATCATTAAGACTTCCAAAGACTTCCAGCAACCTT
ATATTCTGACATGGATGTTGCTAAGCTGCCAAATTTCAGTCTTAACCAAA
TTGAATGTTATTCTTTCTTTTATTTAAGATAGTAGACAAATGTCAATTAT
TTTGGAATGTTCTAAAGGATTTGGACGAAGAATGTTGGATATTGGAGCCT
GAAGTTCCATCATATGATTGTCAATATCGAAGAATTGCACTCGGTATGAA
ACATAATTAAGTTTCTGATAATCTGAAATTTTATTCTGAAATCTTTATTG
TTTATATTTATTCAAAGACCTGTATCCAGCTTATGGTGTTTTAAAGTCCG
TGTCAAAAAGGTGTGCAGTGTTTAAATTTTTTACCAAAAGTTATGGCCAA
AAATAAAACAACTGCAAACTTTTTAGGCAGTAATGTGCCTTTTCGGCTTG
TTGTCTCTGTTCACTAGCTTGCCGCAAGTCGTATATTATTGCTATTAAAA
TTAGTTGATTTCGTTCCGTTCCGTATCCGGAACTCTAACTCATCTTCAAT
AAACTGTTCAATATTCTTCAAGAGTTCTGCATATTTTTCGCGTTGGATGG
TCTCCTCTTGCCGAACATCACCCAAAGGATACTTATATCTATACACCAGC
TCACCAATTGATGCTAATAGAATCACAAAAACTCCAATGAGAGCTGTATA
AATCATTAGGCCTTTATCTAAGCCGTCGAAGATCTCATGTAACGGCCTTA
TCACGTATTTGTTTGTTAATAAAGGACTGGCGATTGTTTTAGTAATGGTC
TCCTTTTCATCTTCTAACTCTTCGTCCGACATTGCCATCTCATCATCTTC
ACAATTCAAAACTGTTCTGTTATAATGAACAAACATTTTCAGACTTGTAT
CTGTCTCCAATTCACGTTCAATTACTAAATCCTTCACTTCATCTTCGTGG
TCTGCAAAGAAGGATGCTGCAGCATGTTTCTCCATCAAGCCAGCGTCTGC
AGTACCGCTTTTCACTGCGTCGATAATTTCATCGTATTCATTAACACTTA
CGGATGTACCCAATAAGTTTTTTCGCACGATCAAATCCTCGATGGATCTA
TCTATAACAGCGATGCTTTTTCCTTTTGTATCATACTGCTCGTCGATAGC
GTTCCAAGCAGAGGCTGTGATCAAAGCTACCAACATCAATCCAAAAATAA
TCCAAATGATAACAATCAATCGACTTAATGGATGTTTAGGAGTTTTATCC
CCATAACCTACAGTCGTCATAGTTACAACTGTAAACCAAAAACTGGACCA
CAATCCGGTACCGGGCGATCGGGGAAAATGATCACTCCCGGCTAGTGTCT
CAATTATCCAAACGATGGTTGCGATAATCAAGGCACAGAGTAAAGAAAAT
ACAACAGCCGTCATACATCTTTGAAATGATTTCAAAAATTTGACCAAAAG
TAGGACTTCACCCTTGCGCACTATGAGAACTGGTCGTGTGTGAATCAATT
TTGATACCTCGTAAAAATTGTCATTCAAATGTTTCATATCATTATAAGTC
ATGGGTCCAACCATTATCAAATCGTTTTCAGTAACTGTTTTACTCACATT
TAACATTTCCAAAAGTTTTGTCTCATTCTTTTCTTGAATCAAATTCAACA
TTTCTGTATGGTGAGCTATTCTGGTGATTCTTGATTCATCTGCCTTCGGA
ATGACTTGATCACACAATAGAAGGGTGCCTCGTGTAATCAAATGATTGGC
CAGTTTCCCATAAGGGTCTTGATCAAATAAATACAAATGAGTCTTGAACT
TCATATCTTCCTCTTCTGCCTTTGATGGTGTCATCAAAACGCAAATAATT
CCCATATGCAATAACTTAGTCATATTGCTAGTGAGTCTCTTTGAATTGAA
TTGTCGTGGACAGTATATTTTTTGTTTTGATAAGTAAATATGGTAAATTG
TCGCTTATTATAGCTCTCAGTACCTCATTGATCCAATAGATGGTATTATG
TTATCGCTTTGATTTTCTTTTCGTACAGATGATATATATTCGCTTCAAAG
ATTTTGTGTGTTTGATTTCTTAAAACTTTTTCTTTGAATTATTGAATTCT
TTTAGCGTGGGTCGACTTGTATATACTCCTTTGATAAAATCCCTATTGAA
ATTGTTCTCTTTCTTTGTATCAAGAAGTAATCTCGCTTCTATCGAACCTC
TACTGGTTGCCCAAATTTAATTTATTATCCTTCTCAGCATGTAACTGGGA
TGTAACTCAAAACAATTCTGACATAGCAGTTCTTCCTTTCCTTGTTTGAA
ATCAAAAATTCTTTCTGATAAAATATTGATTTTATTATTATTTTTCCTTG
CTATATTTATATTGATAACATTCATATTTCGATCGCCTTTCCACACTATA
TTGATATTTTCACATTATTTTCCGCAATTTTTTACAGCCGACATCAATAA
CTTGATTTCTTCATTCAATATGATTAACTATCGTCAAGTAACTTTTGACT
TTTTCTCTTATTCAATCAGTTAGTTATGTTAACAACAAAACGCGAACGCA
AAAGCAATCTGTTCGAAGATAGCAAGGTGTTAAAAAATTATGATGTTTTT
AGAAAGCTCCTATAAAACAAAAACAAAAAATAGAAAAATAAAACTTGTTT
TCTCCCTTTGNTAGCAAGGTGTTAAAAAATTATGATGTTTTTAGAAAGCT
CCTATAAAACAAAAACAAAAAATAGAAAAATAAAACTTGTTTTCTCCCTT
TGAATCTTGTTTTATGATGTTAAGAAGGTTCAAAAAATGAAATTATCATT
GATTTGTTCCCAAAGTTTTGGCGGAGGCCCCCGCACATCAAACGGCTCAC
TGGGACACGCGCAGAAAAATAATCTGCACCCATGCAATGAAAACTTTAAT
GAAACCATTTTCCGTTGCAAAATTCTACCGAACTCGTCATTGCCGACAGG
TTTAAGTAGTGAGGGGCACAACCCAAGACGGGTTTCCGATTCCACGTTCG
GTTCGGTTCGGTTCGTATATAACCAAGCAGGTCGGCCATGAACACACGTA
AAATGGCTAGTCGACGCCATTAGATTGGCATTGGAAAATTAATGTTTGCA
GGAGTGGAGGAAAGATATATACAAAAAAGTTTTTCTTTTTCAGGGCTACT
CTAGAAACAATCTACACTTTCTTCTCTTCTTAGGTAAGAATGCTTCATTG
AGAATCGATGTCAACCCACTGCAACCGTCCACCTTCCCAGAATGCCGTTT
CCTTGGTCCTTCTACTGGTAAGTCCGCAGTGAAGACCATTTTTAGCCTAC
CCCTAATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGATGCAT
TGTGGGATTGTTTTGAGTGTATTACAATAGAATTGTAATTACATTACATT
ATTGTAATCCACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAA
TCAAAACCTCCGATAAGGTCTATTAGGGGCAGGCTAAAAATGGAGAAAAA
AAATTTGGATTACCAAAGCATGGTGTAAAAGGGGCCGGTGTAAAAAGGCC
TTCCTACGCTTGTATTTTCGATACCGTCGTCGAAAGAACTTTTTTGTATT
TTCGTCACCAGTCTCCTCAAAAACTGACTGCGCCGTTAAGGGTTGATAGG
TGTTTTTCCCAGCTGGAACACAGCGTTGTTTTAACGTTAATCTAACGTTA
TATGGATGTTGTGAACGTTAGATTAACGTTGAAACAACGTTGTGTGCCAG
CTGGGTTGAAGCTTTCTCCTTAGAACTAAAAACTGTCCCATACCGCTAGA
TGTCGTATAACATAACTCTCTGTAGTTTCAAAAGTTGAAGAAAACTCGCG
GTCTCTTGAAAAATAAGTTGAAAAAGTCAACCCTTCCCAGTCGTTCTTTT
CCCTTTATACAAATGCCCAGCTCTATACCCACCCATCCACAGTATCGTAT
GGAACTTAGATAGTAGAAGAAGCGATGACGATGATAACTGGATAATGATT
GTAAAGAAATTTATATGAATGTTTTTTTTTAGTTATCGATCCATTAAAGC
AAAATTTGAATAAACACATGCACCTATGGTACGTTTTTCCTCTCTTAAAG
CAACCTGACATGCATCTGAGTTAGGCATAATTCCATGCTCGAAACTCTGC
TGCTCAATTAATTTAGACCAATGAAAATGCGATTTTATATGGATAAATTT
TAGATAAATGTTTGGTAAACTGCTGCAGGATAGTAGTCAATAGGGTGCCA
ATCTTCATTTTCAGAAAAAATTTTCTTAGGCACCACCACCCCTTTTCAGT
ACCTGGTGCTAACATTTTTGAGAATCCTCATTTGAGAAAAAAATGGACTC
AAACCCCTTATTTAAAAGCCAGTAATTAAGAAAATATTGGGTACATTACC
CTGGAATATTGCCTTACCATACACACCTAGCATTCAATTTTACCTCACCA
ATAAATATACTTCCGGTGAATGCAATCCGATTATTTTCGAGAATTTTAGC
GAAAGATTTGAGAAGTTCAAGTTCTGATTTGTCGAAATTGGGGAATCCTT
ACCCATTACCTACCTAAATCCAAAATCCAGGACAATAGCTTAAATATGAG
AGATCTACCCAGCCCACCCCAAATATAGTACCAGATATTAGTATATAGAT
ACCTCCACCCAGCTATTGGTCAGTACTCTGCAGCTGTTCCCCTGTTAATA
CTCCTAAGACTATAATTATTGTTCAATAGGGACGATCAGAAAGATTTGTT
GGACAATTTACGAACAGTACTTGACATCGAATTCCCATCGAAGACAACCG
TGGAAATCAATGTAAGGAATTTTTGATCGTAAGATCNCTCCTAAGACTAT
AATTATTGTTCAATAGGGACGATCAGAAAGGTTTGTTGGACAATTTACGA
ACAGTACTTGACATCGAATTCCCATCGAAGACAACCGTGGAAATCAATGT
AAGGAATTTTTGATCGTAAGATCTACTTTGATCAATATAGAAAGGTTCCA
GAAAAACCTAACCTGGAGTCCGCTTAGGGCTCTTGATAGACTGGATGGTG
CGATTAGGTGGCCCGGTAGTACATAGACAGCTACAGCTGCCTGAACTTTG
CTCTGATGATTTTGAAGTAGACTAGAGGACATCGTAATCTTGAATTAATT
CTAAATTCTAAAACCCAGTCAAAGTTTACAAAACTATATTAGCAACATCA
AAATACCTCCTAAATTTGAAAAAAATAGTCTAATGGTCATATTTTTCTGT
AAGTTTAGCTCCAAAAAGAGACTGGATCTACTGGCATAGATTTGCTACCA
CCTCAAGCAAAGTCAAAAAATAGAGTCTGCTAAATTACGCCAGGCCATTT
ATCAGCCCTATCCAGTCCATCAATAAGCTACATGTGCATTTAAAAGTTGC
AAGTTGCGACTACATTTAAGGGAACTAATTTTCGCGGGAACTAATTTTTG
CTGAACTTATTTTCGAGGTACAAGGATTCTAAATTGGCCTATTTTGCGGA
ACTAATTTTCGCGGCTGGCACACACTTTTCGCCGAAATTCTTTCGTATTC
CTTGGTTTTTTTGAAGGTTTTTGGTAAATTTACATTTTTCGGAACTAATT
TTCGCGGTAGACACCCAAAAATGCGAAAATTATTTCTCTTTACATTTATC
TGGAATAGTAAAAATTGAGTGCGAAACCTGACGTTTCTTTTCGCAGGAAT
TACGTGTTGAATGTGGTATTTGTTATGCATATCAACTGGAGGACGAGATT
CCTGATAAAAGTTGTGAAGATACAAGATGTGCTCAAACTTTTCACTCATC
ATGCTTACTTGAGGTAAAATCAATGTCGAGAATTATTTTACTTCTAGTTT
TTTCTTGTTAGCGATTTTTCAAGTTAGCAATAATCATATTTTTGTACATT
ACTCATTACTTCGAGGCTAAACGTAGATTATAGTCCGATAGAATTAGCTC
ATAAAAGGCCCTAACCTTGAAATTAATCATATGTGGCTGAAGTTTGGAAC
CAAGAACCAACATAAAAACTGTTGTTGCATTTTTATGTTGACCTCAATTT
TCAGTACAAACCTCTACAAACAAGATTTCCAAAAGAGATTTGAGCGTTTC
GATGGTTAGATCAATAGATAAATGGATTTTAAAGATCAATTATTTTTGAT
GAGTCAGTACACTTTAAGCAAATTAAGTCAGCAGAACTTTAAAAATCTTG
GTTTAATCACTTAAACTAGGCTTTATATGAGTTTTCCTTATTTTCATTTT
CCAGTGGATGCGATGTCTTCCCTCATTCCGTCAAAGTTTTAATGTAGTTT
TTGGTCAATGTCCATACTGTGAAAAGGTAATTTCATTCTTTTAATGTTTG
AGTTGAGTGTATAAATGCTTTCAAATGACTAGCCTCCAAATGGGTGTAGC
CGACTTTGTTGTGCAATGAAATTTCTTTTGACTAAATTATCTTGGTTACT
TTTCTTTAGAAATTGACCATCAAATTGAAGAAATGAATATCGATTGGGTG
AAAAGGAGCGAAAATAAAGATTGTAGCTCGGAATATTACGGGCAAACAAA
ATTGTACAATAATTAATAATGGGTATATTTGTGGAACTTATTTTCTATTG
CGATGGAACTATGGTATGGAGTTGTTCAAGATGAATATGCTAGCTATGTA
GAGGAAAAAAACTTATNCACAGGAAAAAATTATTGATTCCCTAGCCTAGG
GATTGTTCATTTTCAGATGTGTTTTTTTATTCGATCACATTAGTCTAGAA
TTTAAAGTTCGGGAAAGTAAGGAACTTAGGGAAACCTATTTTCCTATGCT
GGAAGTGTATTACCAATGTGTTAGTGAAAACGGATTTCCACATGTGGAAA
ACTAATATTTTTAACATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033044XLOC_033044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052187-exon-scaffold_212-1575043694:60954..61087TCONS_00052187-exon-scaffold_212-1575043694:60954..61087Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:60154..60275TCONS_00052187-exon-scaffold_212-1575043694:60154..60275Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:57722..57778TCONS_00052187-exon-scaffold_212-1575043694:57722..57778Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:57298..57401TCONS_00052187-exon-scaffold_212-1575043694:57298..57401Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:57067..57114TCONS_00052187-exon-scaffold_212-1575043694:57067..57114Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:54679..54721TCONS_00052187-exon-scaffold_212-1575043694:54679..54721Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:54470..54526TCONS_00052187-exon-scaffold_212-1575043694:54470..54526Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:52558..52599TCONS_00052187-exon-scaffold_212-1575043694:52558..52599Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:52295..52409TCONS_00052187-exon-scaffold_212-1575043694:52295..52409Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:49271..49354TCONS_00052187-exon-scaffold_212-1575043694:49271..49354Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:48460..48505TCONS_00052187-exon-scaffold_212-1575043694:48460..48505Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:47727..47808TCONS_00052187-exon-scaffold_212-1575043694:47727..47808Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:46725..46841TCONS_00052187-exon-scaffold_212-1575043694:46725..46841Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:46212..46283TCONS_00052187-exon-scaffold_212-1575043694:46212..46283Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1575043694:45667..46078TCONS_00052187-exon-scaffold_212-1575043694:45667..46078Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:60954..61087TCONS_00052187-exon-scaffold_212-1510915933:60954..61087Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:60154..60275TCONS_00052187-exon-scaffold_212-1510915933:60154..60275Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:57722..57778TCONS_00052187-exon-scaffold_212-1510915933:57722..57778Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:57298..57401TCONS_00052187-exon-scaffold_212-1510915933:57298..57401Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:57067..57114TCONS_00052187-exon-scaffold_212-1510915933:57067..57114Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:54679..54721TCONS_00052187-exon-scaffold_212-1510915933:54679..54721Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:54470..54526TCONS_00052187-exon-scaffold_212-1510915933:54470..54526Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:52558..52599TCONS_00052187-exon-scaffold_212-1510915933:52558..52599Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:52295..52409TCONS_00052187-exon-scaffold_212-1510915933:52295..52409Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:49271..49354TCONS_00052187-exon-scaffold_212-1510915933:49271..49354Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:48460..48505TCONS_00052187-exon-scaffold_212-1510915933:48460..48505Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:47727..47808TCONS_00052187-exon-scaffold_212-1510915933:47727..47808Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:46725..46841TCONS_00052187-exon-scaffold_212-1510915933:46725..46841Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:46212..46283TCONS_00052187-exon-scaffold_212-1510915933:46212..46283Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1510915933:45667..46078TCONS_00052187-exon-scaffold_212-1510915933:45667..46078Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:60954..61087TCONS_00052187-exon-scaffold_212-1491911889:60954..61087Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:60154..60275TCONS_00052187-exon-scaffold_212-1491911889:60154..60275Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:57722..57778TCONS_00052187-exon-scaffold_212-1491911889:57722..57778Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:57298..57401TCONS_00052187-exon-scaffold_212-1491911889:57298..57401Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:57067..57114TCONS_00052187-exon-scaffold_212-1491911889:57067..57114Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:54679..54721TCONS_00052187-exon-scaffold_212-1491911889:54679..54721Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:54470..54526TCONS_00052187-exon-scaffold_212-1491911889:54470..54526Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:52558..52599TCONS_00052187-exon-scaffold_212-1491911889:52558..52599Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:52295..52409TCONS_00052187-exon-scaffold_212-1491911889:52295..52409Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:49271..49354TCONS_00052187-exon-scaffold_212-1491911889:49271..49354Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:48460..48505TCONS_00052187-exon-scaffold_212-1491911889:48460..48505Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:47727..47808TCONS_00052187-exon-scaffold_212-1491911889:47727..47808Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:46725..46841TCONS_00052187-exon-scaffold_212-1491911889:46725..46841Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:46212..46283TCONS_00052187-exon-scaffold_212-1491911889:46212..46283Clytia hemisphaericaexon
TCONS_00052187-exon-scaffold_212-1491911889:45667..46078TCONS_00052187-exon-scaffold_212-1491911889:45667..46078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_212supercontigscaffold_212:45667..61087 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.220918	0	0.260677	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00052187 vs. Swiss-Prot (Human)
Match: FANCL (E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.502e-80
Identity = 120/316 (37.97%), Postives = 187/316 (59.18%), Query Frame = 2 
Query:  194 R*XCSWDVLQTLKGYEEAIQKKLNQSSSIHEFLTELKALVE----NITSFSSLNDRPDDIGSHQLTEIFQEIEQIGWDKLVFTDNNFGTLKFVHCDKESREHILVLERQGAFS----DFVASTNLPVNLQQKKNEKILVKYNKFVKIVDKCQLFWNVLKDLDEECWILEPEVPSYDCQYRRIALGKNASLRIDVNPLQPSTFPECRFLGPSTVIDPLKQNLNKHMHLWDDQKDLLDNLRTVLDIEFPSKTTVEINELRVECGICYAYQLEDEIPDKSCEDTRCAQTFHSSCLLEWMRCLPSFRQSFNVVFGQCPYC 1117
            R  CSW +   L GY   +Q+++  S  +  F+ ELK L+E    N     +L   P    S     + +EI  +GWDKLV+ D  F T+K    D   REH++ L+ +  +     D+     +P          ++  Y++F+  ++  + FW+V+ ++DE+ W+LEPE P      RRIALG N S+ I+V+P  P+  PEC FLG   V+ PL   L++++HLWD +  +L NL+ VL+I+FP++  +E ++  ++CGICYAYQL+  IPD+ C++++C Q FH  CL EW+R L + RQSFN++FG+CPYC
Sbjct:   52 RLLCSWQLRTILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSS-----LIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECPYC 362
The following BLAST results are available for this feature:
BLAST of TCONS_00052187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FANCL1.502e-8037.97E3 ubiquitin-protein ligase FANCL OS=Homo sapiens ... [more]
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