TCONS_00052056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052056
Unique NameTCONS_00052056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052056 ID=TCONS_00052056|Name=TCONS_00052056|organism=Clytia hemisphaerica|type=transcript|length=1194bp
AATTTTCAACCAAGATCAATGTTTGTAACGTATTATACCACGTAACTAGT
GACAACTCAACTGGTCACTTCAATATTTCCAACATCCCAAAATGTCTGAG
TAACGTTTTACCAATTTACAAACCACGTTACTAGTGACAGTTAACTGGTC
ACTTCAACATAGCCAAAGTCACAAAACAAGTAATGTTCAATTAGTGTCCT
CTGCAATAGCACAACTTACTCGCTACATACCAAGCCAGTCTGGTTCTGGG
CGTACTCATTACGACGTACCTCAAAACCGAGCACCGTTGCGTATTAGTAT
TCTGCTTGTCAATTGTACAGCAACACGTTTGAACCAACATCCCAACCGAG
TGATCCACCAACATCCAATCCAATTGATCCATCCATCATTTCAGTGCAAT
CGGTGATAGCAGTCGACCTATCACAAGGGGCATGGTGTTCTCTTTGATAA
TGTGGGCACACATGAGGCGGTGGGCATTCACAGTGAGGAGACGACGTGGT
GTTGAAGTGACATCCATATCGACGACCATCAGTTGTTGGGCAAGGGGTTT
GTTGAccaatttgaaacgaaaaagaGTTTGAATTTAATTAGAATACATTT
GAACCACAACAACATGTAACATAAACTCCTGAaacaaaatcatgaaatca
tTTATTAGGGGGGATGGTCTGGGCATAAACGTAGGAGGGTACACCACGTT
CGTCATAGGTGAGAAACTTCTTTGGTTTCCTAATGCGTTTTGGACGACCA
AATTGATAAAGTTGAAGACATTCATCGTATGCGAGTTGGTTGCTTGATGT
GGAATCCTCAACTTCGTCCTCGGAGCCGTCGGAGACTTCATCTTCCGTAT
TATTCAATGATTGATCTGACGTGTTAGGGGAGACACCATGATGACCCGAT
TCTTCTAGAAGCACATCCTCATCGTCACCATCAACATCAAACTGTTCTTG
CAAACCAGCGTTATCAGGGTGAAAGTACCCGCTTGAGTCCTCACTGTGAG
CCCTCTCACTCAAATCTCCAACGGAATGAGGAGGTACCTTCGAATCTTCT
AAAGTACAAGCAGGCCTGCTCGAATCATCCATCAGCCCACCGTTAATTGT
ACGGAAGTACCTGCTCGAGTCTAGTTCTCGGTGAGCCTCCGGGCTCGAAT
CACCAACGGGATGAGGAGGTACCGCCGAATCGTCTAAGGTACNN
Run BLAST on NCBI

transcript from alignment at scaffold_209:113926..115180-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052056 ID=TCONS_00052056|Name=TCONS_00052056|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_209:113926..115180- (Clytia hemisphaerica)
AATTTTCAACCAAGATCAATGTTTGTAACGTATTATACCACGTAACTAGT
GACAACTCAACTGGTCACTTCAATATTTCCAACATCCCAAAATGTCTGAG
TAACGTTTTACCAATTTACAAACCACGTTACTAGTGACAGTTAACTGGTC
ACTTCAACATAGCCAAAGTCACAAAACAAGTAATGTTCAATTAGTGTCCT
CTGCAATAGCACAACTTACTCGCTACATACCAAGCCAGTCTGGTTCTGGG
CGTACTCATTACGACGTACCTCAAAACCGAGCACCGTTGCGTATTAGTAT
TCTGCTTGTCAATTGTACAGCAACACGTTTGAACCAACATCCCAACCGAG
TGATCCACCAACATCCAATCCAATTGATCCATCCATCATTTCAGTGCAAT
CGGTGATAGCAGTCGACCTATCACAAGGGGCATGGTGTTCTCTTTGATAA
TGTGGGCACACATGAGGCGGTGGGCATTCACAGTGAGGAGACGACGTGGT
GTTGAAGTGACATCCATATCGACGACCATCAGTTGTTGGGCAAGGGGTTT
GTTGACCAATTTGAAACGAAAAAGAGTTTGAATTTAATTAGAATACATTT
GAACCACAACATGTNAGGGGTTTGTTGAAACGAAAAAGAGTTTGAATTTA
ATTAGAATACATTTGAACCACAACATGTAACATAAACTCCTGAAACAAAA
TCATGAAATCATTTATTAGGGGGGATGGTCTGGGCATAAACGTAGGAGGG
TACACCACGTTCGTCATAGGTGAGAAACTTCTTTGGTTTCCTAATGCGTT
TTGGACGACCAAATTGATAAAGTTGAAGACATTCATCGTATGCGAGTTGG
TTGCTTGATGTGGAATCCTCAACTTCGTCCTCGGAGCCGTCGGAGACTTC
ATCTTCCGTATTATTCAATGATTGATCTGACGTGTTAGGGGAGACACCAT
GATGACCCGATTCTTCTAGAAGCACATCCTCATCGTCACCATCAACATCA
AACTGTTCTTGCAAACCAGCGTTATCAGGGTGAAAGTACCCGCTTGAGTC
CTCACTGTGAGCCCTCTCACTCAAATCTCCAACGGAATGAGGAGGTACCT
TCGAATCTTCTAAAGTACAAGCAGGCCTGCTCGAATCATCCATCAGCCCA
CCGTTAATTGTACGGAAGTACCTGCTCGAGTCTAGTTCTCGGTGAGCCTC
CGGGCTCGAATCACCAACGGGATGAGGAGGTACCGCCGAATCGTCTAAGG
TACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032965XLOC_032965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052056-exon-scaffold_209-1575043694:114571..115180TCONS_00052056-exon-scaffold_209-1575043694:114571..115180Clytia hemisphaericaexon
TCONS_00052056-exon-scaffold_209-1575043694:113926..114509TCONS_00052056-exon-scaffold_209-1575043694:113926..114509Clytia hemisphaericaexon
TCONS_00052056-exon-scaffold_209-1510915933:114571..115180TCONS_00052056-exon-scaffold_209-1510915933:114571..115180Clytia hemisphaericaexon
TCONS_00052056-exon-scaffold_209-1510915933:113926..114509TCONS_00052056-exon-scaffold_209-1510915933:113926..114509Clytia hemisphaericaexon
TCONS_00052056-exon-scaffold_209-1491911889:114571..115180TCONS_00052056-exon-scaffold_209-1491911889:114571..115180Clytia hemisphaericaexon
TCONS_00052056-exon-scaffold_209-1491911889:113926..114509TCONS_00052056-exon-scaffold_209-1491911889:113926..114509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_209supercontigscaffold_209:113926..115180 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.94701	3.56326	2.07564	1.14593	6.23737	4.73986	5.98391	6.82449	11.433	8.52459	12.3088	15.5913	7.46055	7.63875	7.17799	6.47423	10.8809	12.6576	8.65276	7.57822	12.222	12.6103	7.61971	7.14885	5.72227	4.4518	8.36741	5.02564	6.73465	7.51176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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