TCONS_00051960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051960
Unique NameTCONS_00051960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051960 ID=TCONS_00051960|Name=TCONS_00051960|organism=Clytia hemisphaerica|type=transcript|length=351bp
CGAACACTATAGAGGGAACTAAACAAATTTCATGCTGATTTTCTACTGTC
TGCTGCTGAATGAATAAAGACATAAGGACAGAagaactatgtaaaaggtc
ctATGTCTACGTATAATTATATCTCTGGTACTGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGAagaactatgtaaaaggtcctATGTCTACGT
ATAATTATATCTCTGGTACTGATGTCAGCTAGCACTCAATGGCTGAATGC
CAATTGTGTTCATCGATCTGGTTGAATTGGAAGTTGCCTTCTTTAGAAGT
GGGGGTTTTAATAAATGAAATGGACCTATATGGATTGAATAATAAAGTAT
T
Run BLAST on NCBI

transcript from alignment at scaffold_206:298305..298655

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051960 ID=TCONS_00051960|Name=TCONS_00051960|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at scaffold_206:298305..298655 (Clytia hemisphaerica)
AATACTTTATTATTCAATCCATATAGGTCCATTTCATTTATTAAAACCCC
CACTTCTAAAGAAGGCAACTTCCAATTCAACCAGATCGATGAACACAATT
GGCATTCAGCCATTGAGTGCTAGCTGACATCAGTACCAGAGATATAATTA
TACGTAGACATaggaccttttacatagttctTCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTCAGTACCAGAGATATAATTATACGTAGACATa
ggaccttttacatagttctTCTGTCCTTATGTCTTTATTCATTCAGCAGC
AGACAGTAGAAAATCAGCATGAAATTTGTTTAGTTCCCTCTATAGTGTTC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032891XLOC_032891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051960-exon-scaffold_206-1491911889:298305..298655TCONS_00051960-exon-scaffold_206-1491911889:298305..298655Clytia hemisphaericaexon
TCONS_00051960-exon-scaffold_206-1510915933:298305..298655TCONS_00051960-exon-scaffold_206-1510915933:298305..298655Clytia hemisphaericaexon
TCONS_00051960-exon-scaffold_206-1575043694:298305..298655TCONS_00051960-exon-scaffold_206-1575043694:298305..298655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:298305..298655 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.415498	0	0	0	0.02982	3.11545	6.6037	6.41873	4.01408	4.27936	3.99306	1.32578	1.77373	3.028	1.58394	3.44863	7.53186	6.42246	3.33589	4.41431	0.00608075	1.62268	0	2.42755	1.69793	0	0.514291	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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