TCONS_00051891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051891
Unique NameTCONS_00051891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051891 ID=TCONS_00051891|Name=TCONS_00051891|organism=Clytia hemisphaerica|type=transcript|length=530bp
catgccgtgggttgTTAAAAAGAAGGGCCATGTGAAATGCagcaatctca
ttggtggaaatttgataaacaaagCAAAGAGGCAGCTCTGGGAAGCAATC
catagaagagaccacttttgcatttgttgcagatttcaatataaattaaa
tttctcaCATGGATTACTTGTTAAATATGTGTTGTCatcttgtcagcatt
gtattgttatgaagggaaagataaaagcaCTAAGACTAGCTTAGTTTTTA
ATCCTGATGTAGGAGTCTTAGTCTAGGTTGTCAAACAGGCTaaagttttt
taagattttttaggATTTAATGAGGTGATTAGAAACAAATAGCGTTTTTC
AAAAGTTCAGGATGCAATATTACATGATTGCGGCCCAATCAGATCAATTT
TGATACGTGATACTGTAAGTTGGTTTAATGTTGACATCCGTCATCCCTAG
TCATTTGGGAGAACGTGCAATGATCTTTTGACTCAGTTCCGCATATTAAA
CTACTCTAGCTATTAAAGCCGGAAATTATC
Run BLAST on NCBI

transcript from alignment at scaffold_205:368402..368931

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051891 ID=TCONS_00051891|Name=TCONS_00051891|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at scaffold_205:368402..368931 (Clytia hemisphaerica)
GATAATTTCCGGCTTTAATAGCTAGAGTAGTTTAATATGCGGAACTGAGT
CAAAAGATCATTGCACGTTCTCCCAAATGACTAGGGATGACGGATGTCAA
CATTAAACCAACTTACAGTATCACGTATCAAAATTGATCTGATTGGGCCG
CAATCATGTAATATTGCATCCTGAACTTTTGAAAAACGCTATTTGTTTCT
AATCACCTCATTAAATcctaaaaaatcttaaaaaactttAGCCTGTTTGA
CAACCTAGACTAAGACTCCTACATCAGGATTAAAAACTAAGCTAGTCTTA
GtgcttttatctttcccttcataacaatacaatgctgacaagatGACAAC
ACATATTTAACAAGTAATCCATGtgagaaatttaatttatattgaaatct
gcaacaaatgcaaaagtggtctcttctatgGATTGCTTCCCAGAGCTGCC
TCTTTGctttgtttatcaaatttccaccaatgagattgctGCATTTCACA
TGGCCCTTCTTTTTAAcaacccacggcatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032843XLOC_032843Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051891-exon-scaffold_205-1491911889:368402..368931TCONS_00051891-exon-scaffold_205-1491911889:368402..368931Clytia hemisphaericaexon
TCONS_00051891-exon-scaffold_205-1510915933:368402..368931TCONS_00051891-exon-scaffold_205-1510915933:368402..368931Clytia hemisphaericaexon
TCONS_00051891-exon-scaffold_205-1575043694:368402..368931TCONS_00051891-exon-scaffold_205-1575043694:368402..368931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:368402..368931 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221045	0.323331	1.50167	1.34672	0	0.235556	0	0	0.0931352	0.115363	0	0.220822	0.220515	0	0.188275	0.134699	0	0	0	0.245885	0.320578	0.469101	0	0	0	0.211808	0.303097	0.323473	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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