TCONS_00051883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051883
Unique NameTCONS_00051883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051883 ID=TCONS_00051883|Name=TCONS_00051883|organism=Clytia hemisphaerica|type=transcript|length=834bp
AGAAAGGAATGGGAGTACCATTCTTTTGTGGAGTACTCCTTTGAAAATTC
TGTAGCGAAGTGAATTTATCTTCTTACAGAAAGTAATATCTGGAATTTTT
TGTGTTAAGTGGTTTACATTAATTATATGTTGGTGTCAATGCAAAACATT
TTCAAGTATATTTAAAATTGTTATGAAGTGATTTAAGTGTATTGAAATTG
ATTTAAGTTTGAAGTGATTTAATTCTTGTAAGTATGAAGTGATTTCTTTT
TTGTAGAGAACAGTTTTGATATCATTTAGTACGTATGGAAAGTTTCGATA
TCATTTAGTACTTATGGAAAGTTTCAAtaattttacaagtttgttaATAG
AGCGTTAAGAGGTGTTCAGAGGTACAAAGACTAAGGAACCTGGGACTTGA
GTGTATGTTACAGTGCCTTAGTCATCACTCAGAGGACCCTTAAGATATCA
TAGGTGCATACTTTATACCTAGAACATTGATGTAGAAGATTGCAAAGAAA
TAAGTATTTAGATAAATATATATTCTTACCaggtttgttaattttttgtg
aaGCCATCTTGTCTGTCAGGTAATAAATTTGAATGAAAGTAAAGAAGGGT
ATTAGTTGATTAAGATTTTGGTTTTATAGTATAGTAGACCATGCGTTTtt
cataatgttattgtttcattgttttattTGTGATTCGATTGGTTATTTAG
ATCACGTGagttttattcttcatttttattggataattttttcttttgtt
tgaaagaatCGTGTATTCTGAATAAATGTGTGAACGTTTTTGGTATGTCT
TATTAACgttttttgtatgttttattaacgtttc
Run BLAST on NCBI

transcript from alignment at scaffold_205:277246..278079

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051883 ID=TCONS_00051883|Name=TCONS_00051883|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at scaffold_205:277246..278079 (Clytia hemisphaerica)
gaaacgttaataaaacatacaaaaaacGTTAATAAGACATACCAAAAACG
TTCACACATTTATTCAGAATACACGattctttcaaacaaaagaaaaaatt
atccaataaaaatgaagaataaaactCACGTGATCTAAATAACCAATCGA
ATCACAaataaaacaatgaaacaataacattatgaaAAACGCATGGTCTA
CTATACTATAAAACCAAAATCTTAATCAACTAATACCCTTCTTTACTTTC
ATTCAAATTTATTACCTGACAGACAAGATGGCttcacaaaaaattaacaa
acctGGTAAGAATATATATTTATCTAAATACTTATTTCTTTGCAATCTTC
TACATCAATGTTCTAGGTATAAAGTATGCACCTATGATATCTTAAGGGTC
CTCTGAGTGATGACTAAGGCACTGTAACATACACTCAAGTCCCAGGTTCC
TTAGTCTTTGTACCTCTGAACACCTCTTAACGCTCTATtaacaaacttgt
aaaattaTTGAAACTTTCCATAAGTACTAAATGATATCGAAACTTTCCAT
ACGTACTAAATGATATCAAAACTGTTCTCTACAAAAAAGAAATCACTTCA
TACTTACAAGAATTAAATCACTTCAAACTTAAATCAATTTCAATACACTT
AAATCACTTCATAACAATTTTAAATATACTTGAAAATGTTTTGCATTGAC
ACCAACATATAATTAATGTAAACCACTTAACACAAAAAATTCCAGATATT
ACTTTCTGTAAGAAGATAAATTCACTTCGCTACAGAATTTTCAAAGGAGT
ACTCCACAAAAGAATGGTACTCCCATTCCTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032835XLOC_032835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051883-exon-scaffold_205-1491911889:277246..278079TCONS_00051883-exon-scaffold_205-1491911889:277246..278079Clytia hemisphaericaexon
TCONS_00051883-exon-scaffold_205-1510915933:277246..278079TCONS_00051883-exon-scaffold_205-1510915933:277246..278079Clytia hemisphaericaexon
TCONS_00051883-exon-scaffold_205-1575043694:277246..278079TCONS_00051883-exon-scaffold_205-1575043694:277246..278079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:277246..278079 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.454115	0.38748	0.257086	0.314398	0.6124	0.967853	0.510857	1.09316	1.00452	0.829506	0.632609	0.529267	0.188761	0.039206	0.225629	0.138362	0	0.218384	0	0.126287	0.164649	0.32124	0.13017	0.177515	0.0609454	0.543923	0.544847	0.166136	0	0.0641912
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top