TCONS_00051855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051855
Unique NameTCONS_00051855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051855 ID=TCONS_00051855|Name=TCONS_00051855|organism=Clytia hemisphaerica|type=transcript|length=1130bp
AGAAAATTACCTTGATTCTCCATCAGGTTAGTACCATCATTCAAGGAGAA
AAGATTCTAGTAAAAAACCTTTTCTTCACCTCCTCTTGTAGATCCATTTC
AACCGCCGCAAGGGTTTCCACCACAGTTCGGAGGGCCACTGCGTGGTAGC
GACAGTGAATATGATAGCGAAGGTGAATTAAGAAGACATCGGAGAAGAGA
CTCCTCTGGTAGACATGGTAGCAGGAGACATCGAGACCGAAGTGATCGAG
GTGAAAGAGACCGTGATAGGAGTATGCGTGATAGAGATCGTGATCGTCCA
CGAACAGAACATAGGGATCGTTCTTCAAGGCGTAGGCATGAATCACGTTC
AACTTCAGATAGGAAAAAACATTCGAGATCTGGGCGAGAAGAGGAGGAAG
GGGGTGAACGTAAATCTTCCCGTAGAAGTCGCACCAAAACTGAAATCAAA
CAGGAACCAATAGATAATACAGACAATGGAGTAGTAAATGATAGCCTAGC
ACCTGATGGAGCGGTCAACGTGGAAGCTGGTGGAGGGGAAGCATAGATGC
TAGGTTatatttgtgatttttgttttggtggTATTATTCTTGCAGTTTGT
CTGGTAGTCGGAAGATATGAAGCGGGGTAGATCGTTGCTTAGCTACCGTT
TCATGTCTCGATCAGGTTTGAAGATTTCAAACCGTTTTTATCAAAAGTAC
TCGAAAAGAACattatatgaaaatatttttttcaggaaaaatgaCACTTG
AAATTGACttaaattttatcttatttGCGCGCTAAAAGAACTAAAAACAG
TCAAATCCAACACAACAACGAGTCCGTTGGAAATGACGGATAGTACTTTT
ATTAGATATACATATTATATTTGCACCTTTTAATATTGTGTATTGTGCTG
ATCATGTAAAAAGAAATGGAGAAGCAGATTATCTCGCGAATGGTAATTTT
TAAAAGTCGAATTTTTCAATGATTAATGAATCAATACCCAAAACTCTCTT
TTCGAATCTCAAGTTTTAAAATCTTGGATTCGGTTTTGAGCTTCATGCAG
GGCAGGAATTCCTCAGGAATTCAGAGTTTTATGGattaaaatgaagtttt
ttcaaaatctctGGATTTAATTCAATTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_205:89725..92986-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051855 ID=TCONS_00051855|Name=TCONS_00051855|organism=Clytia hemisphaerica|type=transcript|length=3262bp|location=Sequence derived from alignment at scaffold_205:89725..92986- (Clytia hemisphaerica)
AGAAAATTACCTTGATTCTCCATCAGGTTAGTACCATCATTCAAGGAGAA
AAGATTCTAGTAAAAAACCTTTTCTTCACCTCCTCTTGTAGATCCATTTC
AACCGCCGCAAGGGTTTCCACCACAGTTCGGAGGGCCACTGCGTGGTAGC
GACAGTGAATATGATAGCGAAGGTGAATTAAGAAGACATCGGAGAAGAGA
CTCCTCTGGTAGACATGGTAGCAGGTGATTGATCTCTTTTATTCTAAGAT
TATACACAGCTGCCTTGAGAGATTGCTCCTCTATGGAACGCTGTAGCTGC
CTAATGTGATAAAATATTCGATTATGCGATAAAATATTCGATAAAAAATT
TGATGCGATAAATCATTCGATAAATTATTCGATGCGATAAAATATTGGAT
GCCATAAATCATTCGATAAAAAATTCGATGCGATAAACCATTCGATAAAT
TATTCGATGAATTATCCGATCGGCCCTTAGTAAGGGCCTTACCCGATATT
TATACTTTTGGTGGAAATGGCGCATCTTTCAAAACGCAAAACGCAACCCC
ACGTGTGTGTGTGTGGGGGGTGGGATATGAAAACGTCGACCATTTTGCTG
GCAGTTGGTGTTCAACTTTTAAGTAATTAAGTAAGTAATTAATGGATTAA
ATTACACTACGTCAGTGACTTTAGTGTGTACCAGTTCTTTTTAATTTTTA
TGGGAAAGTCAAACCAAAGGTATCTCTTGCTTTATCAATTACATTACAGT
TGACAGTAAAGGCCAAAAAGCGATAGAAAGGGGTAATCTGATGGGATTTT
GGTTCAGCAAAATCGAAATCTAGAAGGATTTTTTTCTTTGGTATTCTAAC
TATTTTATTCTATCAGGATCATCAATAGCGTAAGGGGTCGAGGATGGAAA
AAAAGTTTCATAAACTTTGAGGGAGGACATCGCAATTTGACTTCGAACTA
AACTAAACGGAACATAATTTACATAAAACTAAAATCTGTTTAATAATTGC
CCTCAGAATTGATGATTGCTATACTCTTTTGTGCTTAATTGTCTAAAATC
ATATACTATGAATTTTCTCCCAGAGTACCAACCCCGCTGCTTATTCCACC
AATCCCTAAAATTAACTTCAAAAGAGTATTGGATTTATTTGCGATAATTC
TAAACTCAGTAAGATAGATCGATAAATCTGTTAGTTCTATTTTTTTCTGG
ACACACTGTTTTTTTTTTGCCATGATCTGCCCTAATCAGCAGCACCCCCG
GAAAATCTTCTTTTCGATCGATGATTTCACCCTTCCGGAGCGCGGTTTCC
ACCAAAAGTATAAATATCGGGTAAGGGCTGATCGGATAATTCAACGAATA
ATTTATCGTATGGTTTATCGCATCGAATTTTTTATCGAATGATTTATCGC
ATCGAATTTTTTATCGAATAATTTATCGCATAAGGCAGCTACGGTGTTCC
ATACTCCTCGTTATAATTGGGTATCAATTTACTTTGAAGTAAATGTAAAA
GAGATGTCCAAGCAATCGCACCACTCTTTTTGATACTTTGAAGTATCTGT
GTTTGGTGGGCTTTTCAACTTTAGCAAGCTCGGTCTGTACTCTGGCTGCG
GTCAATATTTTTCCGTGTCGACCTTCAAAACNGCTTTTCAATTTTAGCAA
GCTCGGTCTGTACTCTGGCTGCGGTCAATATTTTTCCGTGTTGACCTTCA
AAACAGTTACTATTGTATAAATATCGGACATTTCTGACGTTGCTGAATGT
GAAATCTCTTTGTTGGCTACGAACCAGACTGTCTAAATGTCGTGTAAAAA
TTAACAACTTTTAATTTCTGTTTTTTTCTGTTCTTGCTTCCATCCAGTAT
ATTATCAGACTAGTACCATTGTTTTATTTAGTAGGAGACATCGAGACCGA
AGTGATCGAGGTGAAAGAGACCGTGATAGGAGTATGCGTGATAGAGATCG
TGATCGTCCACGAACAGAACATAGGGTAAGAACATGTTTTTCTACAGCTC
TGGAGTTAAGAACTACATGTTTTTTGAATTATTGAGCAACTTTGAAAATA
TAGATATTCTTAGAAACATTGTATCGGTATGCCTAGGAACTGGGATATGA
CACGGATGTTTTTATCATTGTTTTAATATATATTCTTAGGATCGTTCTTC
AAGGCGTAGGCATGAATCACGTTCAACTTCAGATAGGTAGGTCAATATTT
GATTAAATCTTTATTATTTGAGATCAAAAGGAAATAAAACTACCTTTACT
CAAACCAATTTTCTTTTTAATTTCGAATTATGATATCTCGACTTTGGAAA
AAAGTTTAGATAAAGATACTTGGATGTCTTACTCAATGCCACAGAAAGCT
TCCGCAGGTCAAATATCCAAAAGAAGGACTAAGAAGATTCAATAAATTTA
ACGGGATAAACATGAATGCATTGTGAACCTTTTCTTCATTTAACCTACAC
TCTAACGTTTTCCAATTTTGAATATTATTTTTTTCATTTCTCAGGAAAAA
ACATTCGAGATCTGGGCGAGAAGAGGAGGAAGGGGGTGAACGTAAATCTT
CCCGTAGAAGTCGCACCAAAACTGAAATCAAACAGGAACCAATAGATAAT
ACAGACAATGGAGTAGTAAATGATAGCCTAGCACCTGATGGAGCGGTCAA
CGTGGAAGCTGGTGGAGGGGAAGCATAGATGCTAGGTTATATTTGTGATT
TTTGTTTTGGTGGTATTATTCTTGCAGTTTGTCTGGTAGTCGGAAGATAT
GAAGCGGGGTAGATCGTTGCTTAGCTACCGTTTCATGTCTCGATCAGGTT
TGAAGATTTCAAACCGTTTTTATCAAAAGTACTCGAAAAGAACATTATAT
GAAAATATTTTTTTCAGGAAAAATGACACTTGAAATTGACTTAAATTTTA
TCTTATTTGCGCGCTAAAAGAACTAAAAACAGTCAAATCCAACACAACAA
CGAGTCCGTTGGAAATGACGGATAGTACTTTTATTAGATATACATATTAT
ATTTGCACCTTTTAATATTGTGTATTGTGCTGATCATGTAAAAAGAAATG
GAGAAGCAGATTATCTCGCGAATGGTAATTTTTAAAAGTCGAATTTTTCA
ATGATTAATGAATCAATACCCAAAACTCTCTTTTCGAATCTCAAGTTTTA
AAATCTTGGATTCGGTTTTGAGCTTCATGCAGGGCAGGAATTCCTCAGGA
ATTCAGAGTTTTATGGATTAAAATGAAGTTTTTTCAAAATCTCTGGATTT
AATTCAATTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032818XLOC_032818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051855-exon-scaffold_205-1575043694:92763..92986TCONS_00051855-exon-scaffold_205-1575043694:92763..92986Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1575043694:91012..91102TCONS_00051855-exon-scaffold_205-1575043694:91012..91102Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1575043694:90801..90847TCONS_00051855-exon-scaffold_205-1575043694:90801..90847Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1575043694:89725..90492TCONS_00051855-exon-scaffold_205-1575043694:89725..90492Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1510915933:92763..92986TCONS_00051855-exon-scaffold_205-1510915933:92763..92986Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1510915933:91012..91102TCONS_00051855-exon-scaffold_205-1510915933:91012..91102Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1510915933:90801..90847TCONS_00051855-exon-scaffold_205-1510915933:90801..90847Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1510915933:89725..90492TCONS_00051855-exon-scaffold_205-1510915933:89725..90492Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1491911889:92763..92986TCONS_00051855-exon-scaffold_205-1491911889:92763..92986Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1491911889:91012..91102TCONS_00051855-exon-scaffold_205-1491911889:91012..91102Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1491911889:90801..90847TCONS_00051855-exon-scaffold_205-1491911889:90801..90847Clytia hemisphaericaexon
TCONS_00051855-exon-scaffold_205-1491911889:89725..90492TCONS_00051855-exon-scaffold_205-1491911889:89725..90492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:89725..92986 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.7795	12.5622	15.2949	9.62481	11.6389	8.70051	8.88709	13.5934	6.96121	5.15496	5.9679	2.8192	6.03351	8.29918	5.29056	6.39033	7.59094	5.00249	3.33071	2.82061	4.88696	7.46405	10.0241	7.61558	6.209	9.88417	1.45185	2.62821	6.23735	6.69667
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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