TCONS_00005116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005116
Unique NameTCONS_00005116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005116 ID=TCONS_00005116|Name=TCONS_00005116|organism=Clytia hemisphaerica|type=transcript|length=382bp
CTATCGAAGATGCGAATGGGAGATATTTGTATTCACATATTGTACAACAG
AAACTAGCACCTTTGTTCCTAACAGGTCAAGAGCCTCATAAAAAACAACA
GTATAATTTTGAGGACACCACAAAGATTAGAGCTGCGATAAGTTATTCCA
ACAAAGACTTCGTGATTGGATTGCGATTAGCAGAATGGCCTAAAGAGATA
CTGCAGGAGTTTCCAATACCAGAAGCTATGGACAAACTTAAGAATATACC
ATTATTCTTGATTGCCAAGAGTTTTCCTGGTAGTCCTCTTGCTAAACTAG
AATGGAGGATTTCATTTTCGTTAGTTGAGTTAGAAATTCTACTTAATTTA
CCCTATTATCAAAGAAAAgcgtttttacattt
Run BLAST on NCBI

protein sequence of TCONS_00005116-protein

>TCONS_00005116-protein ID=TCONS_00005116-protein|Name=TCONS_00005116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
IEDANGRYLYSHIVQQKLAPLFLTGQEPHKKQQYNFEDTTKIRAAISYSN
KDFVIGLRLAEWPKEILQEFPIPEAMDKLKNIPLFLIAKSFPGSPLAKLE
WRISFSLVELEILLNLPYYQRKAFLH
Run BLAST on NCBI

transcript from alignment at sc0000050:732943..733324

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005116 ID=TCONS_00005116|Name=TCONS_00005116|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0000050:732943..733324 (Clytia hemisphaerica)
aaatgtaaaaacgcTTTTCTTTGATAATAGGGTAAATTAAGTAGAATTTC
TAACTCAACTAACGAAAATGAAATCCTCCATTCTAGTTTAGCAAGAGGAC
TACCAGGAAAACTCTTGGCAATCAAGAATAATGGTATATTCTTAAGTTTG
TCCATAGCTTCTGGTATTGGAAACTCCTGCAGTATCTCTTTAGGCCATTC
TGCTAATCGCAATCCAATCACGAAGTCTTTGTTGGAATAACTTATCGCAG
CTCTAATCTTTGTGGTGTCCTCAAAATTATACTGTTGTTTTTTATGAGGC
TCTTGACCTGTTAGGAACAAAGGTGCTAGTTTCTGTTGTACAATATGTGA
ATACAAATATCTCCCATTCGCATCTTCGATAG

Coding sequence (CDS) from alignment at sc0000050:732943..733324

>TCONS_00005116 ID=TCONS_00005116|Name=TCONS_00005116|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000050:732943..733324 (Clytia hemisphaerica)
atgtaaaaacgcTTTTCTTTGATAATAGGGTAAATTAAGTAGAATTTCTA
ACTCAACTAACGAAAATGAAATCCTCCATTCTAGTTTAGCAAGAGGACTA
CCAGGAAAACTCTTGGCAATCAAGAATAATGGTATATTCTTAAGTTTGTC
CATAGCTTCTGGTATTGGAAACTCCTGCAGTATCTCTTTAGGCCATTCTG
CTAATCGCAATCCAATCACGAAGTCTTTGTTGGAATAACTTATCGCAGCT
CTAATCTTTGTGGTGTCCTCAAAATTATACTGTTGTTTTTTATGAGGCTC
TTGACCTGTTAGGAACAAAGGTGCTAGTTTCTGTTGTACAATATGTGAAT
ACAAATATCTCCCATTCGCATCTTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002912XLOC_002912Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005116-proteinTCONS_00005116-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005116-exon-sc0000050-1491911889:732943..733324TCONS_00005116-exon-sc0000050-1491911889:732943..733324Clytia hemisphaericaexon
TCONS_00005116-exon-sc0000050-1510915933:732943..733324TCONS_00005116-exon-sc0000050-1510915933:732943..733324Clytia hemisphaericaexon
TCONS_00005116-exon-sc0000050-1575043694:732943..733324TCONS_00005116-exon-sc0000050-1575043694:732943..733324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:732943..733324 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.696585	0.227166	0.553107	0	0.263655	0.740491	0.345623	0.85622	1.66214	0.409734	0.954716	1.13312	0.349343	1.12469	1.23158	1.8935	1.52598	0.684357	1.18966	0.290137	0.7054	1.06885	1.32107	0.98252	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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