TCONS_00051556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051556
Unique NameTCONS_00051556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051556 ID=TCONS_00051556|Name=TCONS_00051556|organism=Clytia hemisphaerica|type=transcript|length=1896bp
CAAACTTTGAATATTTCTTGTGGCTAAACTTGGAAACTGAGGTTTTTAAA
GGACTTTTTAAACATCTGGGTATTTATTTCATTCTGTCATAATCTCACGA
GGATGTTCAGTGCGGTACCCAACTTTCACCGATTTTTTCGTTCAATATGG
TTGCATATGACGAGATGactttgatgttttcaatcaGCTCCAAGGTGGAT
CAACGATCACTAACCATGTCGCTAAGCAACCACGATCGCCGGATGAGTGA
TCAATCATCCGGTAACAATACGCGAACCTCATCACTCAAACATCAACATA
ACAATCCAAGAGAACTGAAAGTTGAATATTCAGCCGTCAGTCAAAAAGCA
ACCGTCAAAAGTACAGAAACGGTCAACGACACTCAAGTCATTTACGTTTA
TTGTTCACCACGTTTGAAACATACGTTAATCTTTATAtttcgttttgttt
tgattacgTACTGCGTTGCCGTTCCCGTATTTGTGTATCTTCTACATCAA
AAAAGTTCGGTTAATATtgcgaaaattgaaaagtttgaaactgattttca
aagacatttacataaaatttcagaaaatgatAAACTAAAGAATGAACAGT
CTGCACCTTCATCTTCAACGTCGACTCGTAAAAGAAGAAACGCTGAATTG
GCTCAAAAGGAATTCGACAAGTCTTATAAACAACCAGGAATGAAGGatca
agattttcaaaagaagctGAAAGAATTCAACAATACAGTTCAGAAATATA
GactgaaGCTTTCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAAATC
TACATGAAACATATCAGCACCAATTTAGATAGCACTGATTGTAACTGTAA
AAAAGATTCCTCTGATGGAAAAGAATGTGCATCGAAAGAATGCGATTGCT
CGAAAGTAAAGCAAGGACCACCAGGACCTCCTGGAAGACAAGGTGAACAA
GGTGATCCTGGAAAAATTGTAAAGGTACCGACGCTGAGAGGTCCTCAAGG
TTTGCAAGGTTCCAGAGGACCGAAAGGTGACCCTGGGGATATTGGTCCTC
AGGGAAAACCAGGTGCTGATGCAAGCTGTgattccaataaaaacaacaaa
gatttgaaaacaactTACATTCGTTGGGGGAGTAAAGAATGTGGAAAAGA
TGCCAACAAGATATACTCAGGATACATGGGTGGCGCTTCAAACCGAGCCA
GTGGCGGTGGTTCCAACTATCTGTGTCTCCCAGAANTACATGGGTGGCGC
TTCAAACCGAGCCAGTGGTGGTGGTTCTAATTATCTGTGTCTCCCAGAGA
CACCATCATACTCTAAAGtacaaaaatttaaacaaagtGATGCGTCTGAA
ATTGACATTCAAATTGGGAATGATATATTCTGTTCAGTTTGTGAGAGAAT
TGGTAAAAGTAGTACTATTATGTATCCAGCATCGAATCTATGTCCTGAGG
GATGGGAGTTAGAATATACAGGAACCCTGGTCACGCAGAAACAAACTAAA
CGAACGGAGTATGTTTGTCTGTCGCAAGAAGTGACTTCAAAGCTTTGGAG
ATCGAATCTGGGTATGACAACAGTTTCAGAACAAGCATGTAAGATATTGA
ACTGTGGACCGTATGAggcgaaaaagaatttgaattgcGCTGTGTGCACG
CAATAAATTATTTTACGAATGAATGCGTGAATGATGGAAAACATATGTTT
TGCACAGAGAAAAACATCGGCCAGAGCTGCAAGATGTTTGGAAAatttct
ctttatttttttatattaatgTAATATAGTCAAAGTATAGATTTAAGTCA
AATTATTTGATTATTTAAGAGAAAAATGTATAAATTAGTAGATATTTTAA
GGTATTGTCCAAAGAAATTCTTGAACTTTATTATTTAGTATAAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_202:1065656..1071280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051556 ID=TCONS_00051556|Name=TCONS_00051556|organism=Clytia hemisphaerica|type=transcript|length=5625bp|location=Sequence derived from alignment at scaffold_202:1065656..1071280+ (Clytia hemisphaerica)
CAAACTTTGAATATTTCTTGTGGCTAAACTTGGAAACTGAGGTTTTTAAA
GGACTTTTTAAACATCTGGGTATTTATTTCATTCTGTCATAATCTCACGA
GGATGTTCAGTGCGGTACCCAACTTTCACCGATTTTTTCGTTCAATATGG
TTGCATATGACGAGATGGTTAGTCTCGAATTTTCGTTTAACTTTTAATTT
AACAATGTTCTCAAAACTATGATTGTTCGACCGGTGTCATAGTTCAGGAA
TGAACTAAAAAACTTTCTTGTATTTTCTAGCGTTCGGCAGTATGAGAATC
CGTTTTTTAACATAAATCATACTCTTTTTTTCGAATACACTTTGAGTCGA
TATAAACAAGACTAAAAGTTAAACTTTCAATTGTCACAAGAGGTGGAGTA
ACCTTTTAAATGCATTTCAGTAAACTTTTCTATAGTCTTAAAATAGAGGG
TTGGATTTCATTTGATTATTAGGTTAATCACATTTTGTCTAGTAATTGAT
AGCAATGGGTTAATTAATCAAAAGAAGTTAAGCGATGATAACAGTTCAGT
GTTTTTGATCACTCACGTTTTGTAATTTTGGCTGAATTTTggtttcttga
tttttatatTGACTAGTTTTTGTAATTGGCTGGTACTGTAGGATGGCTGT
AGGATGCTCTTAATTTAAACTCGGTTAATAAAGATTACATCAGATTTAAA
AGCATTCTCCTCAAGACTCAAGTGCAGCCAAATTTTccaacaaaacattc
gaatgtaatgACTTCTCTTAATCTTTTAAAATCTGTGTATACTTCTATTT
TTCCTTATATATTTAAGACTTTTGTCAATCGACGAAGCTGACATTTTCAA
GGAGCTTATTAATTCCTTTCATTTAGactttgatgttttcaatcaGCTCC
AAGGTGGATCAACGATCACTAACCATGTCGCTAAGCAACCACGATCGCCG
GATGAGTGATCAATCATCCGGTAACAATACGCGAACCTCATCACTCAAAC
ATCAACATAACAATCCAAGAGAACTGAAAGTTGAATATTCAGCCGTCAGT
CAAAAAGCAACCGTCAAAAGTACAGAAACGGTCAACGACACTCAAGTCAT
TTACGTTTATTGTTCACCACGTTTGAAACATACGTTAATCTTTATAtttc
gttttgttttgattacgTACTGCGTTGCCGTTCCCGTATTTGTGTATCTT
CTACATCAAAAAAGTTCGGTTAATATtgcgaaaattgaaaagtttgaaac
tgattttcaaagacatttacataaaatttcagaaaatgatAAACTAAAGA
ATGAACAGTCTGCACCTTCATCTTCAACGTCGACTCGTAAAAGAAGAAAC
GCTGAATTGGCTCAAAAGGAATTCGACAAGTCTTATAAACAACCAGGAAT
GAAGGatcaagattttcaaaagaagctGAAAGAATTCAACAATACAGTTC
AGAAATATAGactgaagtaatttttttgaatttaagtGAATTTAAGTGAT
caagatttcaaattaaaacgGTTATCATTAACTGTTACCATTTTAAAATC
AGTAAGGAAAATACCCCCTTTATAATGACCCCCCCTGAGATCAATGTTGT
GAAGGTTTGAGCTGTTACAGAGAAGTTGGTTTGCTTTAAAACATAGATTT
TTTAGGGGTACCCCTCCCCTTCTTAACTTTGCTGTCAATATATTAACTGA
CAGATTGTAGTAATTTTAAACCTTAGTCACAATTATTTGGAATTCTAGTC
TTTATTGAGCCTTTATTagccaaattcaatattttcttcATTCAGGCTTT
CCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAAATCTACATGAAACAT
ATCAGCACCAATTTAGATAGCACTGATTGTAACTGTAAAAAAGGTAAAAG
ATATTATCACTTAACGAACTTTCAGGCACCTTTATATATTGGACCCTTAT
TTAACGCCGGTTTTTTATGCCGCTGCCTGATTTTAAGCTTAGATCTATTA
TAGCCGTAATTGAACAACGAAAGCTGAAAGCTATTCTCAATATCATTTGT
GAGTTAGCtgttaaaagttttattgaaaacaaCTAAAATTCTTGCAGTTT
AGAAAATGGGTCGAAGAGTGGTTAATTTTCATCTTACTAGGAAAAAGATT
TAATGATAACACAATATTTTATCCCTTTATTACCACCAGGCAATAAATTA
AGGCCTGCGCAGATGCATCCAACATTTGATCTAAGATTTCGAATTCTTTG
TTGGACGAGATGTTGGATGAAAGTCACGAAAAGTTggatgaaaagtcatt
tgcgcaaaaatgtcaaaaaaattttgatccaACATGATTACGCAAATACC
AAAACATGAaagcaacatgaaagtggcgtCAATCTCATAAAAATGTTAGA
TGAAATGTTTGGTAGCGATCAAACTTTATACAATACGTTTTCCAACATTA
TTATTAAAAAGTTGCGATTTTATGACTTGCGCAAATGAacccaacatttc
atccaacaaatGTTGAATCCGATATTGGATgcatttgcgccggcctttaA
TGTCAACCAGGGTCGATAGTATATTACTTCTGGTCTGTCCAGCATCAGTT
AATTATATCAACCATGCAcgttgaaatgaaaatattgattgTTCACAGCA
AATTTTATCATGCATTAATCTCTGCTTTCACGTTTCAGAAACAGATTCCT
CTGATGGAAAAGAATGTGCATCGAAAGGTACTGAGAATTATTTCCTTATT
TCCGAGAACATCCTGTTTCATTCATAAGGACCAGCTTATGCTGGCGAAGA
TATTCTTCTTATGGAGCAAAAATCACccaataaatttaaaattgtatATT
GTCTCCTACAACCTATCCTTCATTCCAGGACATAATTGTAGAAACACATG
CTTGTAAAATCTCCTTCCACCTAAAGGGGACAGAGTAAAAGTGTATTTTT
GAGGGGTTGCTTCATTTTCCCCGATTGTAGTTTGTTTCATGGGCATATAT
TTTAACCTCATTTTATAGAATGCGATTGCTCGAAAGTAAAGCAAGGACCA
CCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATCCTGGAAAAATTGT
AAAGgtaatgatttttgaaattattgaaatCATTCCTTTTCTGTTTTGAA
GTGACGCTTCTCATACGGTACCGAATATCTTACCACATCTACATCTTATT
TTATGCAACGAGCTTCCCTATCCGTTTTACTGGGGACTACCTATAATGGA
GCGTAACTTCAACGTTCGTAGCCGAAAAAGCCTAGAGAAGCTCAGTGCTA
AAGATGTCTGTATATATTTGACATTTAGTCAGACGGAATTGAATGACATT
CAAATCACAAGTGTAATCGTCCGCCATACCacgtattcaatttttttaaa
caggtgtcaagtttttgtttgaactattcttcatttttactgttttttaa
atatttcctcagGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAAGGTTC
CAGAGGACCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAAACCAG
GTAAGAAGCCAACCTTCCTCAAATTAAGGAATTTATGATCATTGTTGCCA
AAACCATATCATATTCATTTTCCCATATTATGTCTTCCGAAAGGTGAAAC
AAGAAAGATATGTTAAAATGTAACCTGAAGTTCCTGGCACTGTTTACTTT
GTTTCTAACGACCCTGCCGATGCACCGGACTGATTCGTGTGTGGTCCGAT
ATTTatattgtccggtggtaaaatgTTTTCCGTGTCCGGTGCTTCCGTAA
CTCCGGTGTGTTGGTTGCTCCTGTTCAGCCTTTACCTTtaaggctggtct
ccactttcgcgtgaAATAGGCGACAGTTTTTGCGAGAATAAAAGATTACG
TTAtgaaaaagtttcgcgcgaacaaaaaaaaagttgaaggatgttctact
tttttcatccgttacgtcaatttcgaccaatagaattgcttcatttttga
aCCGACCAATggccttacaaaaacgtcaaaaagttttcactcgtgtcgcg
cgaaagtggagatcGGCCTTTATACTACTCGTTAATTTATGCTTCAATGT
ATGTTCATAGGTGCTGATGCAAGCTGTgattccaataaaaacaacaaaga
tttgaaaacaactTACATTCGTTGGGGGAGTAAAGAATGTGGAAAAGATG
CCAACAAGATATACTCAGGTTTGTTGACAAAAACCTTCCTTTTAAAAGAT
ATTCCATATTAATATTGTTGTATACGTTTTTAATTAATTGtatcttatcg
gggaaaaaagaCCAGGTTTGATTAcattatcggccctttttacgccggcc
cttattgacgttatttttgggctcgtggcgtaataagggccggtgttaaa
ttagggccggcgtaaaaagggccgataaggtagtcgGATGAAAACTTGGA
CGGGGAAAATTCGTCAATTAGAgacattttcgtcactttcatCCGCCATC
AAATTCTGCTTTTGATACTTCTGATTACTTTTGTACAGTTGTTTAACTTT
GTCAAGACCAACTCCGAAGTTTGACTTGGCCGACCAAACGGCCTTAATTT
TTATGCAGTTAAAGAGTCCCTAAGGCGCCAGGGAAGTCAACgaaggctct
aataagcataGAAAGCATTAGCAtagaaaaagtgaattttaattAAGAAA
GAGGCATCATTTGGAGAGGTAAACACACGTATGATTTCATTCACTAAAAT
GTTTCGTATACTGAGATAGTCAATTAATCTTTAGcgagttaaaccatagt
gtttttttacaagattcTGACATCGtggtaaaaaactaaaaattgtttat
atcgacgaaatttttaaatttttaaatttttaaaacgttttattCATAGG
ATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGGTGGTTCCAACTATC
TGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAACCGAGCCAGTGGTGG
TGGTTCTAATTATCTGTGTCTCCCAGAGACACCATCATACTCTAAAGtac
aaaaatttaaacaaagtGATGCGTCTGAAATTGACATTCAAATTGGGAAT
GATATATTCTGTTCAGTTTGTGAGAGAATTGGTAAAAGTAGTACTATTAT
GTATCCAGCATCGAATCTATGTCCTGAGGGATGGGAGTTAGAATATACAG
GAACCCTGGTCACGCAGAAACAAACTAAACGAACGGAGTATGTTTGTCTG
TCGCAAGAAGTGACTTCAAAGCTTTGGAGATCGAATCTGGGTATGACAAC
AGTTTCAGAACAAGCATGTAAGATATTGAACTGTGGACCGTATGAggcga
aaaagaatttgaattgcGCTGTGTGCACGCAATAAATTATTTTACGAATG
AATGCGTGAATGATGGAAAACATATGTTTTGCACAGAGAAAAACATCGGC
CAGAGCTGCAAGATGTTTGGAAAatttctctttatttttttatattaatg
TAATATAGTCAAAGTATAGATTTAAGTCAAATTATTTGATTATTTAAGAG
AAAAATGTATAAATTAGTAGATATTTTAAGGTATTGTCCAAAGAAATTCT
TGAACTTTATTATTTAGTATAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032661XLOC_032661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051556-exon-scaffold_202-1491911889:1065656..1065822TCONS_00051556-exon-scaffold_202-1491911889:1065656..1065822Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1510915933:1065656..1065822TCONS_00051556-exon-scaffold_202-1510915933:1065656..1065822Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1575043694:1065656..1065822TCONS_00051556-exon-scaffold_202-1575043694:1065656..1065822Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1491911889:1066532..1067121TCONS_00051556-exon-scaffold_202-1491911889:1066532..1067121Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1510915933:1066532..1067121TCONS_00051556-exon-scaffold_202-1510915933:1066532..1067121Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1575043694:1066532..1067121TCONS_00051556-exon-scaffold_202-1575043694:1066532..1067121Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1491911889:1067451..1067548TCONS_00051556-exon-scaffold_202-1491911889:1067451..1067548Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1510915933:1067451..1067548TCONS_00051556-exon-scaffold_202-1510915933:1067451..1067548Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1575043694:1067451..1067548TCONS_00051556-exon-scaffold_202-1575043694:1067451..1067548Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1491911889:1068350..1068382TCONS_00051556-exon-scaffold_202-1491911889:1068350..1068382Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1510915933:1068350..1068382TCONS_00051556-exon-scaffold_202-1510915933:1068350..1068382Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1575043694:1068350..1068382TCONS_00051556-exon-scaffold_202-1575043694:1068350..1068382Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1491911889:1068674..1068759TCONS_00051556-exon-scaffold_202-1491911889:1068674..1068759Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1510915933:1068674..1068759TCONS_00051556-exon-scaffold_202-1510915933:1068674..1068759Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1575043694:1068674..1068759TCONS_00051556-exon-scaffold_202-1575043694:1068674..1068759Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1491911889:1069118..1069205TCONS_00051556-exon-scaffold_202-1491911889:1069118..1069205Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1510915933:1069118..1069205TCONS_00051556-exon-scaffold_202-1510915933:1069118..1069205Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1575043694:1069118..1069205TCONS_00051556-exon-scaffold_202-1575043694:1069118..1069205Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1491911889:1069766..1069873TCONS_00051556-exon-scaffold_202-1491911889:1069766..1069873Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1510915933:1069766..1069873TCONS_00051556-exon-scaffold_202-1510915933:1069766..1069873Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1575043694:1069766..1069873TCONS_00051556-exon-scaffold_202-1575043694:1069766..1069873Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1491911889:1070555..1071280TCONS_00051556-exon-scaffold_202-1491911889:1070555..1071280Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1510915933:1070555..1071280TCONS_00051556-exon-scaffold_202-1510915933:1070555..1071280Clytia hemisphaericaexon
TCONS_00051556-exon-scaffold_202-1575043694:1070555..1071280TCONS_00051556-exon-scaffold_202-1575043694:1070555..1071280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1065656..1071280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00113228	0.564539	0.426759	0.166334	0.583556	0.356638	5.7137e-08	1.18313	1.37134	0.485244	1.84196	0.390268	2.11839	1.41937	0.954747	0.953024	0	1.26208	3.36723	1.92867	1.74813	3.09585	0.655623	1.60162	2.48477	2.19539	0.448284	0.874591	0.816574	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top