TCONS_00051698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051698
Unique NameTCONS_00051698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051698 ID=TCONS_00051698|Name=TCONS_00051698|organism=Clytia hemisphaerica|type=transcript|length=802bp
GGTTTATATACCCTGTTTCAGGTAATAAAGCAGATTTTCATCAATAAAAC
CGTGGTGATCTTTCAACGATTCAAAAACACTACTAATGATTCAGTAGAAT
cgttaaaagttttaaaacatATAGCTCGTATATCCAGATGAGTAGAATAA
ACTTGAAGGAGAAGGATGTGTCGAGTAGAAGGACAATGCATCATAGTCTA
gcttctcttctttcttttctccGTATATAGTCAATTGAACTTCAGCTTGA
CAGAGTGGGCATCTCTTTTCGCGTTGCAGCCATTTCAACAGGCAtggttt
atgaaaaatgtgttCGCATGATAACTTCATTACTTTGTCTTTACATGCAT
AGTTCTCTAGACAGATCGAGCATCGTTCACTCGTCTGTGTGCTGTTTTTA
GGTATTTTCCAAGTCTCACATGAAACAAGTTCGttttctttcgttttctt
caagaaataatattttcgatgtccgattttgaaagcgCATTTAGCAGTGT
CTAAAGGTAATAATTGTTTCTGATCTTTGTCACATGTGTGAGTGCTTTTA
TTTGCAAATTTGGATTCGTCGACTTTTGAAACGCACCAACATCCAACTTG
GCATCCAGGTTTTACAGCGTTCTTCTTCTCAACCTCGGTCATTGTGTTTG
TTTTGTGTCTCCAACTAATAAAAGTGTATTCAGAAGTCTTGTAGCATCAA
AAAGAGTCAGTAAATCTTTCTTTCTAACGAAATTTGTGTGTTACTGCTCA
AAGAGCTTATCAGCTTTTTTAAACTTCTTGCTTTCACTTTTAGCTCTCTC
CG
Run BLAST on NCBI

protein sequence of TCONS_00051698-protein

>TCONS_00051698-protein ID=TCONS_00051698-protein|Name=TCONS_00051698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MTEVEKKNAVKPGCQVGCWCVSKVDESKFANKSTHTCDKDQKQLLPLDTA
KCAFKIGHRKYYFLKKTKENELVSCETWKIPKNSTQTSERCSICLENYAC
KDKVMKLSCEHIFHKPCLLKWLQREKRCPLCQAEVQLTIYGEKKEEKLDY
DALSFYSTHPSPSSLFYSSGYTSYMF
Run BLAST on NCBI

transcript from alignment at scaffold_202:433362..434163

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051698 ID=TCONS_00051698|Name=TCONS_00051698|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at scaffold_202:433362..434163 (Clytia hemisphaerica)
CGGAGAGAGCTAAAAGTGAAAGCAAGAAGTTTAAAAAAGCTGATAAGCTC
TTTGAGCAGTAACACACAAATTTCGTTAGAAAGAAAGATTTACTGACTCT
TTTTGATGCTACAAGACTTCTGAATACACTTTTATTAGTTGGAGACACAA
AACAAACACAATGACCGAGGTTGAGAAGAAGAACGCTGTAAAACCTGGAT
GCCAAGTTGGATGTTGGTGCGTTTCAAAAGTCGACGAATCCAAATTTGCA
AATAAAAGCACTCACACATGTGACAAAGATCAGAAACAATTATTACCTTT
AGACACTGCTAAATGcgctttcaaaatcggacatcgaaaatattatttct
tgaagaaaacgaaagaaaaCGAACTTGTTTCATGTGAGACTTGGAAAATA
CCTAAAAACAGCACACAGACGAGTGAACGATGCTCGATCTGTCTAGAGAA
CTATGCATGTAAAGACAAAGTAATGAAGTTATCATGCGaacacatttttc
ataaaccaTGCCTGTTGAAATGGCTGCAACGCGAAAAGAGATGCCCACTC
TGTCAAGCTGAAGTTCAATTGACTATATACggagaaaagaaagaagagaa
gcTAGACTATGATGCATTGTCCTTCTACTCGACACATCCTTCTCCTTCAA
GTTTATTCTACTCATCTGGATATACGAGCTATatgttttaaaacttttaa
cgATTCTACTGAATCATTAGTAGTGTTTTTGAATCGTTGAAAGATCACCA
CGGTTTTATTGATGAAAATCTGCTTTATTACCTGAAACAGGGTATATAAA
CC

Coding sequence (CDS) from alignment at scaffold_202:433362..434163

>TCONS_00051698 ID=TCONS_00051698|Name=TCONS_00051698|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_202:433362..434163 (Clytia hemisphaerica)
ATGACCGAGGTTGAGAAGAAGAACGCTGTAAAACCTGGATGCCAAGTTGG
ATGTTGGTGCGTTTCAAAAGTCGACGAATCCAAATTTGCAAATAAAAGCA
CTCACACATGTGACAAAGATCAGAAACAATTATTACCTTTAGACACTGCT
AAATGcgctttcaaaatcggacatcgaaaatattatttcttgaagaaaac
gaaagaaaaCGAACTTGTTTCATGTGAGACTTGGAAAATACCTAAAAACA
GCACACAGACGAGTGAACGATGCTCGATCTGTCTAGAGAACTATGCATGT
AAAGACAAAGTAATGAAGTTATCATGCGaacacatttttcataaaccaTG
CCTGTTGAAATGGCTGCAACGCGAAAAGAGATGCCCACTCTGTCAAGCTG
AAGTTCAATTGACTATATACggagaaaagaaagaagagaagcTAGACTAT
GATGCATTGTCCTTCTACTCGACACATCCTTCTCCTTCAAGTTTATTCTA
CTCATCTGGATATACGAGCTATatgttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032729XLOC_032729Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051698-proteinTCONS_00051698-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051698-exon-scaffold_202-1491911889:433362..434163TCONS_00051698-exon-scaffold_202-1491911889:433362..434163Clytia hemisphaericaexon
TCONS_00051698-exon-scaffold_202-1510915933:433362..434163TCONS_00051698-exon-scaffold_202-1510915933:433362..434163Clytia hemisphaericaexon
TCONS_00051698-exon-scaffold_202-1575043694:433362..434163TCONS_00051698-exon-scaffold_202-1575043694:433362..434163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:433362..434163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19655	0.991802	1.82898	1.458	6.93855	5.86547	12.2299	14.0418	33.4759	208.95	14.3047	324.855	407.603	333.384	462.767	125.231	339.492	478.704	278.814	149.273	14.6347	13.4584	25.1065	20.4556	25.1156	7.16594	324.122	232.446	31.5419	33.7599
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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