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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051682 ID=TCONS_00051682|Name=TCONS_00051682|organism=Clytia hemisphaerica|type=transcript|length=2167bp
CTCTGTTTCTTCTGTTGAAACATCCTTGGCTGACTTTGCAGTCTTATTGA
CTGTCTCACTTTGGTTGATACCATTCCCAAAGAGTTCCTCCATGTAACca
ccaggcaagaaaaagttttGTCTGGTATCTTCATTTCCTCTTTCTATGTC
TAGATTGTCCAGTTCTTTTTCGACCTCATCGTGATGAAGAACTGGCATTG
GTGGTTGGTGGTTGGTGGTTTCTTTCAAGATGCTCATGATTGTATTGATA
TCCTTTGCTTGTTACTCTATCACCCCACGCATTCTAACCAACTCCAAAGA
AAGTTCATCAATCTTCTCACTTgtactttttttatctttgctGTTCTGAA
TGAAACGACCACCACTTCTTGACGAAACAACATAATCTGTTGACTCCGGT
GTGAAAGACATACGTGTGAAACTGCTTGTGTGGTGTTGAAGCGTTCATTG
AATAAACTGGAGTGTTGGCAGAAAATGGAACAGTGGCAAAACCAGACAAA
GGAACGGCAAAACCAGACAAAGTAACAGTGGTGGAACCAGATGACAAAAC
ATTGGAGGAACAGGACGATGGAACATTAGAGGAACCAGACGACAATGGGG
CGACAATTTCGCCAGACGACAACGAAACGACGGTTTCACCAGACGACAAC
GGAATGACGGTTTCACCAAACGACGACAGAGAGTTGATTTTGCCGGACGA
CGACGGAACAACAGTTTTACCAGACGACAATGGAGCGACAATTTTGCCAG
ACGACAACGACGGAACGACTGTTTCACCAGACGACAACGGAATGACGGTT
TCACCAAACGACGACAGAGAATTGATTTTGCCGGACGACGACGGAACAAC
GGTTTTACCAGATGACGACGAAGCGACGATTTCACAGGATGACGACGGAG
CAACGATTTCACCAGACGACGAAGCGACGATTTCGCCGGACGACGACGGA
ACGATGGTTTTACCAGATGACGACGAAGCAACGATTTCACCGGATGACGA
CGGAGCAACGATTTCACCGGATGACGACGGAGCGACGATTTCGCCAGACG
ACGACAGAGCAACGATTTTGCCGAACCAAGGGGCGACGATTTCACCGGAT
GACGACGGAGCGACGATTTTGGTTGGAAGGGAGGAAAAGGTCCTCAAATT
ACCATCAAATAGTTTGCCTTTAACAACCTTGGAAAATGGGTGTCGGCTTT
CTTGGGTAACTTATGTTTCAGAACCACTGCATCATAAATAAAGCCattta
cacctttttttttttaagaaacacacttttaagaaacatgaggctcagaa
tgcctaaaaactaataaacatgctgaggctgagaatgaaaaaatagcatt
ttttaattcgtttttttaagaaccttccaatcaaggttccagaaatatac
atacataacagttagaaacacttgagaaagtcagaaaatcaatatagaag
attaccgtattatcgacatgcgtccttcaagcttgacaaagtttagaaac
atgtaagaaacatttaaggctcgaaaggccgatttcttaagaaacattga
ggctgcttggtaaaactagtttcttaaaaaaaaaacgtgtacactcTTCT
TTTTTTCCACATTGATGATTTCACGTTAATAAGTAATAAGCAGTCTCACG
CCACTTCTATAATAGTTTGGGAAATTACAAAGAATTGCAGCGCTGCAAAG
TTCTGTATCATCAATGAACGATGAGGAGGTGAAACCATCTAGGCACCGCC
AGTTCCATTAATATTAATGTCTTTTTACTCATTGTGAGTAATTTTCGCAT
CAGACTTTAAGGTTTTTCCATTTTGTTTCAATGTCTTTAGTAGTCCTATT
GGCAACGCCGGGGGCATTAAATCTCCAAGTTATGGCCTCACAGAGAGCTT
GCTTTGCTGCATTAGTTATTGAAGTCGAGAATACCCTTTCCTTCTATCGT
GCTCTGGCtaaaataatttccaaaataaTTCTGATCTGATCACCAGTAAA
GTTGGTTTTTCTTGGTCTTTTTCCTTCCTTGCCAgtcattttgtttgaat
ttctttGTTCCTGAATGAGTTTGTTGAGGCTTTTTAATAACTTTTATCTG
GAAGTTCGCAAGAGTCTTGATTTTCGTCTGGGTCAGGTACTTCGTCAACG
ATATGCACGTCATCGAC Run BLAST on NCBI protein sequence of TCONS_00051682-protein >TCONS_00051682-protein ID=TCONS_00051682-protein|Name=TCONS_00051682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MTVSPNDDRELILPDDDGTTVLPDDNGATILPDDNDGTTVSPDDNGMTVS
PNDDRELILPDDDGTTVLPDDDEATISQDDDGATISPDDEATISPDDDGT
MVLPDDDEATISPDDDGATISPDDDGATISPDDDRATILPNQGATISPDD
DGATILVGREEKVLKLPSNSLPLTTLENGCRLSWVTYVSEPLHHK Run BLAST on NCBI transcript from alignment at scaffold_202:93263..95429 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051682 ID=TCONS_00051682|Name=TCONS_00051682|organism=Clytia hemisphaerica|type=transcript|length=2167bp|location=Sequence derived from alignment at scaffold_202:93263..95429 (Clytia hemisphaerica)
GTCGATGACGTGCATATCGTTGACGAAGTACCTGACCCAGACGAAAATCA
AGACTCTTGCGAACTTCCAGATAAAAGTTATTAAAAAGCCTCAACAAACT
CATTCAGGAACaaagaaattcaaacaaaatgacTGGCAAGGAAGGAAAAA
GACCAAGAAAAACCAACTTTACTGGTGATCAGATCAGAAttattttggaa
attattttaGCCAGAGCACGATAGAAGGAAAGGGTATTCTCGACTTCAAT
AACTAATGCAGCAAAGCAAGCTCTCTGTGAGGCCATAACTTGGAGATTTA
ATGCCCCCGGCGTTGCCAATAGGACTACTAAAGACATTGAAACAAAATGG
AAAAACCTTAAAGTCTGATGCGAAAATTACTCACAATGAGTAAAAAGACA
TTAATATTAATGGAACTGGCGGTGCCTAGATGGTTTCACCTCCTCATCGT
TCATTGATGATACAGAACTTTGCAGCGCTGCAATTCTTTGTAATTTCCCA
AACTATTATAGAAGTGGCGTGAGACTGCTTATTACTTATTAACGTGAAAT
CATCAATGTGGAAAAAAAGAAgagtgtacacgttttttttttaagaaact
agttttaccaagcagcctcaatgtttcttaagaaatcggcctttcgagcc
ttaaatgtttcttacatgtttctaaactttgtcaagcttgaaggacgcat
gtcgataatacggtaatcttctatattgattttctgactttctcaagtgt
ttctaactgttatgtatgtatatttctggaaccttgattggaaggttctt
aaaaaaacgaattaaaaaatgctattttttcattctcagcctcagcatgt
ttattagtttttaggcattctgagcctcatgtttcttaaaagtgtgtttc
ttaaaaaaaaaaaggtgtaaatGGCTTTATTTATGATGCAGTGGTTCTGA
AACATAAGTTACCCAAGAAAGCCGACACCCATTTTCCAAGGTTGTTAAAG
GCAAACTATTTGATGGTAATTTGAGGACCTTTTCCTCCCTTCCAACCAAA
ATCGTCGCTCCGTCGTCATCCGGTGAAATCGTCGCCCCTTGGTTCGGCAA
AATCGTTGCTCTGTCGTCGTCTGGCGAAATCGTCGCTCCGTCGTCATCCG
GTGAAATCGTTGCTCCGTCGTCATCCGGTGAAATCGTTGCTTCGTCGTCA
TCTGGTAAAACCATCGTTCCGTCGTCGTCCGGCGAAATCGTCGCTTCGTC
GTCTGGTGAAATCGTTGCTCCGTCGTCATCCTGTGAAATCGTCGCTTCGT
CGTCATCTGGTAAAACCGTTGTTCCGTCGTCGTCCGGCAAAATCAATTCT
CTGTCGTCGTTTGGTGAAACCGTCATTCCGTTGTCGTCTGGTGAAACAGT
CGTTCCGTCGTTGTCGTCTGGCAAAATTGTCGCTCCATTGTCGTCTGGTA
AAACTGTTGTTCCGTCGTCGTCCGGCAAAATCAACTCTCTGTCGTCGTTT
GGTGAAACCGTCATTCCGTTGTCGTCTGGTGAAACCGTCGTTTCGTTGTC
GTCTGGCGAAATTGTCGCCCCATTGTCGTCTGGTTCCTCTAATGTTCCAT
CGTCCTGTTCCTCCAATGTTTTGTCATCTGGTTCCACCACTGTTACTTTG
TCTGGTTTTGCCGTTCCTTTGTCTGGTTTTGCCACTGTTCCATTTTCTGC
CAACACTCCAGTTTATTCAATGAACGCTTCAACACCACACAAGCAGTTTC
ACACGTATGTCTTTCACACCGGAGTCAACAGATTATGTTGTTTCGTCAAG
AAGTGGTGGTCGTTTCATTCAGAACagcaaagataaaaaaagtacAAGTG
AGAAGATTGATGAACTTTCTTTGGAGTTGGTTAGAATGCGTGGGGTGATA
GAGTAACAAGCAAAGGATATCAATACAATCATGAGCATCTTGAAAGAAAC
CACCAACCACCAACCACCAATGCCAGTTCTTCATCACGATGAGGTCGAAA
AAGAACTGGACAATCTAGACATAGAAAGAGGAAATGAAGATACCAGACaa
aactttttcttgcctggtgGTTACATGGAGGAACTCTTTGGGAATGGTAT
CAACCAAAGTGAGACAGTCAATAAGACTGCAAAGTCAGCCAAGGATGTTT
CAACAGAAGAAACAGAG Coding sequence (CDS) from alignment at scaffold_202:93263..95429 >TCONS_00051682 ID=TCONS_00051682|Name=TCONS_00051682|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_202:93263..95429 (Clytia hemisphaerica)
TTATTTATGATGCAGTGGTTCTGAAACATAAGTTACCCAAGAAAGCCGAC
ACCCATTTTCCAAGGTTGTTAAAGGCAAACTATTTGATGGTAATTTGAGG
ACCTTTTCCTCCCTTCCAACCAAAATCGTCGCTCCGTCGTCATCCGGTGA
AATCGTCGCCCCTTGGTTCGGCAAAATCGTTGCTCTGTCGTCGTCTGGCG
AAATCGTCGCTCCGTCGTCATCCGGTGAAATCGTTGCTCCGTCGTCATCC
GGTGAAATCGTTGCTTCGTCGTCATCTGGTAAAACCATCGTTCCGTCGTC
GTCCGGCGAAATCGTCGCTTCGTCGTCTGGTGAAATCGTTGCTCCGTCGT
CATCCTGTGAAATCGTCGCTTCGTCGTCATCTGGTAAAACCGTTGTTCCG
TCGTCGTCCGGCAAAATCAATTCTCTGTCGTCGTTTGGTGAAACCGTCAT
TCCGTTGTCGTCTGGTGAAACAGTCGTTCCGTCGTTGTCGTCTGGCAAAA
TTGTCGCTCCATTGTCGTCTGGTAAAACTGTTGTTCCGTCGTCGTCCGGC
AAAATCAACTCTCTGTCGTCGTTTGGTGAAACCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051682-exon-scaffold_202-1491911889:93263..95429 | TCONS_00051682-exon-scaffold_202-1491911889:93263..95429 | Clytia hemisphaerica | exon |
| TCONS_00051682-exon-scaffold_202-1510915933:93263..95429 | TCONS_00051682-exon-scaffold_202-1510915933:93263..95429 | Clytia hemisphaerica | exon |
| TCONS_00051682-exon-scaffold_202-1575043694:93263..95429 | TCONS_00051682-exon-scaffold_202-1575043694:93263..95429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:93263..95429 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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