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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051218 ID=TCONS_00051218|Name=TCONS_00051218|organism=Clytia hemisphaerica|type=transcript|length=964bp
cttttttgtactCGACTCAGGttcgaggagggcctcaaagtagaggcttt
cggaagaagaaaagggggCAGAGTTGGGTAAAGTGAGTGAGTTTAAaaat
actctttcacagcaaaaagcgttcgtgcacatcaattttggttagtcttc
tCTTCTCCCTCTTAAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGgtc
gtaagaactgcaagagggagaagaaaaggggacagaggtgggtaaatTGA
GAGAGTTCAAATATattctttcacagcaaaaagcgttcgtgcacATcaat
tttggatgccttttcttctttcttgtactcgacTCAGTTTCGAGGAGGGC
CTCAAgtcaaagtagaggctttcggaagaagaaaagggaacagaggtggg
taaagtgagtgatttaaaaaatactctttcacatcaaaaagcgtTTTTGA
AATGCGATTTTGGATggcttttctttatttttgtactCAACTCAGTttcg
aggagggcctcaaagaagaggctttcagaaaaagaaaaggggacagatgT
ACTCTAAGGGTAGAGAATTTAAGTTAAGCAGATATAAATCATTTATGGTG
AAATGTCGGTGAGATTCCTTCACGGTTGAAAAAGTTTAGTTCAGTTACCG
CTTGGTCGAATGATTCGTCTTTATCTAGATTTCTTTTTTGCTCATTTCTA
CGGGAGGGAAGTTTTGAGGCTAAAACGCAAACGTCCATATTTTCTCGATG
AAATATGCGGTAGCTTGGTTATCAACTTATGGCAAATCGATCATAATAGT
TAGCATAACTTGTGCAGTCTGTGTTTCCATAATAAATCACGGGtttcact
taaaaaatatttccactTTGAAACTGTAATCGATTTCAAATTATAGAGAG
ATTTTtctctgattattttcaacgtTTTAAAGTCATGATTTGATTGGTTC
CAGCTTCATCGAAG Run BLAST on NCBI transcript from alignment at scaffold_20:191562..195605+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051218 ID=TCONS_00051218|Name=TCONS_00051218|organism=Clytia hemisphaerica|type=transcript|length=4044bp|location=Sequence derived from alignment at scaffold_20:191562..195605+ (Clytia hemisphaerica)
cttttttgtactCGACTCAGGttcgaggagggcctcaaagtagaggcttt
cggaagaagaaaagggggCAGAGTTGGGTAAAGTGAGTGAGTTTAAaaat
actctttcacagcaaaaagcgttcgtgcacatcaattttggttagtcttc
tCTTCTCCCTCTTAAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGgtc
gtaagaactgcaagagggagaagaaaaggggacagaggtgggtaaatTGA
GAGAGTTCAAATATattctttcacagcaaaaagcgttcgtgcacatcaat
tttggttagtcttttttTTTCCCTCTTACGTAGTTTGAAAGGAAGACCTG
AGAAGACAGAGGTCATAAGAACTGCAAGAGGGAGAAGAAAATGGGgcaga
ggtgggtaaagtgagtGAGTTTAAACattctttcacagcaaaaacgTTTT
TGAAATAcgattttggatgccttttcttcttttttgtactCGACTCAGGt
tcgaggagggcctcaaagtagaggctttcggaagaagaaaagggggCAGA
GTTGGGTAAAGTGAGTGAGTTTAAaaatactctttcacagcaaaaagcgt
tcgtgcacatcaattttggttagtcttctCTTCTCCCTCTTAAGTAGTTT
GAAAGGAAGACCTGAGAAGACAGAGgtcgtaagaactgcaagagggagaa
gaaaaggggacagaggtgggtaaatTGAGAGAGTTCAAATATattctttc
acagcaaaaagcgttcgtgcacatcaattttggttagtcttttttTTTCC
CTCTTACGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGGTCATAAGAAC
TGCAAGAGGGAGAAGAAAATGGGgcagaggtgggtaaagtgagtGAGTTT
AAACattctttcacagcaaaaacgTTTTTGAAATACGATTTTGGATGCCT
TATCTTCTTTTTTGTACTCGACTCAGGttcgaggagggcctcaaagtaga
ggctttcggaagaagaaaagggggCAGAGTTGGGTAAAGTGAGTGAGTTT
AAaaatactctttcacagcaaaaagcgttcgtgcacatcaattttggtta
gtaTTTACTTTTCCCTCTTAAGTAGTTTGGAAGGAAGACCTGGGAAGACA
GAAGTCATAAGAACTGCAAGAGGGAGAAGAAAACGGGTCAGAGGTGGATA
AAGTGAGTGAGTTTAAAAATGCTCTTTCACAATAAACAGCGTTcgtgcac
atcaattttggttagtcttttcttctccctCTTAAGTAGTTTGAAAGGAA
CCTGTCCAGAGAAGACAGAGATcgtaagaactgcaagaaggAGGAGAAAA
GGGGgcagaggtgggtaaagtgaaagagtttaaaaatactctttcacagc
aaaaagtgttcgtgcacatcaattttggttagtcttctCTTCTTCCTATT
GAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGGTCGTAAGAACTGCGA
GAAGGAGGAGAAAAGGGGGCAGAGGTGGATAAAGTGAAAGAGTTTAAaaa
tactctttcacagcaaaaagcgttcgtgaacatcaattttggttagtctt
ttcttctccctCTTAAGCAGTTTGAAAGGAAGACCTGAGAAGACAGAGGT
CTTAAGAACTGCGAGAAGGAGGAGAAAAGGGGGCCGAGGTGGATAAAGTG
AAAGAGTTTAAAAATACTCTTTCACAGCAAAAAGCGTTCGTGCACATCAA
TTTTGGTTAGTCTTTTCTTTTCCCTCTTAAGTAGTTTGAAAGGAAGACCT
GAGAAGACAGAGGTCGTAAGAACTACAAGAAGGAGGAGAAAAGAGGACAG
AGGTGGGTAAAGTGAGTGAGTTTAAAAATACTCTTTCACAGCAAAAAGCG
TTCGTGCACATCAATTTTGGTTAGTCTTTACTTTTCCCTCATAAGTAGTT
TGGAAGGAAGACCTGGGAAGACAGAGGTCATAAGAACTGCAAGAGGGAGA
AGAAAATGGGgcagaggtgggtaaagtgagtGAGTTTAAAAatgctcttt
cacagcaaaaagcgttcgtgcacatcaattttggttagtcttttcttttC
CCTCTTAAGTAGTTTGAAAGGAAGACCTGAGAAGACAGAGGTCGTAAGAA
CTACAAGAAGGAGGAGAAAAGaggacagaggtgggtaaagtgagtGAGTT
TAAaaatactctttcacagcaaaaagcgttcgtgcacatcaattttggtt
agtctttacTTTTCCCTCATAAGTAGTTTGGAAGGAAGACCTGGGAAGAC
AGAGGTCATAAGAACTGCAAGAGGGAGAAGAAAATGGGgcagaggtgggt
aaagtgagtGAGTTTAAAAatgctctttcacagcaaaaagcgttcgtgca
catcaattttggttagtcttttcttttCCCTCTTAAGTAGTTTGAAAGGA
AGACCTGAGAAGACAGAGgtcgtaagaactgcaagaaggAGGAGAAAAGG
GGgcagaggtgggtaaagtgagaGAGTTTAAAAATactctttcacatcaa
aaagcgttcgtgcacatcaattttggATAGTCTTTTCTTTTCCCTCTTAA
GTAGTTTGAAAGGAAGACCTGAGAAGACAGAGgtcgtaagaactgcaaga
aggAGGAGAAAAGGGGgcagaggtgggtaaagtgagtGAGTTTAAACATa
atctttcacagcaaaaagcgttcgtgcacatcaattttggttagtctttt
cttctccctCTTAAGCAGTTTGAAAGGAAGAGCTGAGAAGACAAAAgtcg
taagaactgcaagaaggAGGAGAAAAGGGGgcagaggtgggtaaagtgag
agagttcaaacatactctttTACAGCAAAAACGTTTTTGAAATGCGATTT
TGAatgccttttcttctttcttctactCGACTCGGTTacgaggagggcct
caaagtagaggttttcagaagaaaaaagggGATAGAGGTGGATAAAGTGA
GTGAGTTTAAAAatgctctttcacagcaaacaGCGTTCGTGaacatcaat
tttggttagtcttttcttctccctCTTAAGTAGTTTGAAAGGAACCTGTC
CAGAGAAGACAGAGGTCATAAGAACTGCAAGAAGGAGGAGAAAAGGGGGC
AGATGTGGATAAAGTGAGAGAATTTaaacatactctttcacagcaaaaag
cgttcgttcatatcaattttagttagtcttttcttctccctCTTAAGTAG
TTTGAAAGGAAGACCTGAGAAGACAGAGgtcgtaagaactgcaagaaggA
GGAGAAAAGGGGTCAGAGGGTGGGTAAAGTGAGTGAGTTTAAAAATTCAA
AGAGTTCAAAAAGCGTTCGTGTACATcaattttggatgccttttcttctt
tcttgtactcgacTCAGTTTCGAGGAGGGCCTCAAgtcaaagtagaggct
ttcggaagaagaaaagggaacagaggtgggtaaagtgagtgatttaaaaa
atactctttcacatcaaaaagcgtTTTTGAAATGCGATTTTGGATggctt
ttctttatttttgtactCAACTCAGTttcgaggagggcctcaaagaagag
gctttcagaaaaagaaaaggggacagatgTACTCTAAGGGTAGAGAATTT
AAGTTAAGCAGATATAAATCATTTATGGTGAAATGTCGGTGAGATTCCTT
CACGGTTGAAAAAGTTTAGTTCAGTTACCGCTTGGTCGAATGATTCGTCT
TTATCTAGATTTCTTTTTTGCTCATTTCTACGGGAGGGAAGTTTTGAGGC
TAAAACGCAAACGTCCATATTTTCTCGATGAAATATGCGGTAGCTTGGTT
ATCAACTTATGGCAAATCGATCATAATAGTTAGCATAACTTGTGCAGTCT
GTGTTTCCATAATAAATCACGGGtttcacttaaaaaatatttccactTTG
AAACTGTAATCGATTTCAAATTATAGAGAGATTTTtctctgattattttc
aacgtTTTAAAGTCATGATTTGATTGGTTCCAGCTTCATCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051218-exon-scaffold_20-1491911889:191562..191855 | TCONS_00051218-exon-scaffold_20-1491911889:191562..191855 | Clytia hemisphaerica | exon |
| TCONS_00051218-exon-scaffold_20-1510915933:191562..191855 | TCONS_00051218-exon-scaffold_20-1510915933:191562..191855 | Clytia hemisphaerica | exon |
| TCONS_00051218-exon-scaffold_20-1575043694:191562..191855 | TCONS_00051218-exon-scaffold_20-1575043694:191562..191855 | Clytia hemisphaerica | exon |
| TCONS_00051218-exon-scaffold_20-1491911889:194936..195605 | TCONS_00051218-exon-scaffold_20-1491911889:194936..195605 | Clytia hemisphaerica | exon |
| TCONS_00051218-exon-scaffold_20-1510915933:194936..195605 | TCONS_00051218-exon-scaffold_20-1510915933:194936..195605 | Clytia hemisphaerica | exon |
| TCONS_00051218-exon-scaffold_20-1575043694:194936..195605 | TCONS_00051218-exon-scaffold_20-1575043694:194936..195605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:191562..195605 + |
Blast
The following BLAST results are available for this feature:
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