TCONS_00051151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051151
Unique NameTCONS_00051151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051151 ID=TCONS_00051151|Name=TCONS_00051151|organism=Clytia hemisphaerica|type=transcript|length=1298bp
GCTTTAATGTGATTCTTTTGATCCTCTGTATATGTTGCGTCGCACTTTAT
ACAAATTATGGGACATTTACAGTGTCCGAAGAAGATCCTGTCGACATAGA
AGACATTGAAGTTTATCATCCATCACTCTCCGAAAACAGTTGGTTGGCTG
ATACCAATAAAGATCACAAAGCGATCTACAGTCAACTGAAGCCTGTCCAA
TGGTACAAAGACAACTGGAAAGAAAAAGCAGATTGTCCTTATCCATCCTA
TGTTCataagaaatatgaaaaattatcTTGGTTCCCGTTGTTTTTACATC
ACCAAATGAAAGTCAATTTATCTGCAATCCCACCAAAACAATACAAGGAA
GGATGCACCAGATTCTGGCATGCACAACCACAAACAGACTTTGGAGAGCT
TCCACATCGCAAACTGACTTGGAAAGAACAAAAACCGCCACCAAATTATG
TGCGCCCTAATTGTTCTTTTGGACAAGGTACCAAGCCATGGACACGTTGC
TCAAGAAAGCATCAAGAATTATGGAGTTTGCTTGACCAATCAGGCATCAT
TTATTTCGCGCGATCAGGATCAGAACTTGGAGTCATCAGAAACGGCACGT
ATCTTTCACACGACGGCGATATGGATGTCTATGTGGATTATCCTCCAGAG
AAATTTATCAAACTTATTGGAGATAAACTTACACCACGACCTTACGGAGA
TCAGTCAATAGGAAGTGTTAAAGCTGAAACACATTGGGATGTACCTGGTT
GTCCTAAACTTAATATGGTTTTCAATGATTGGATGGTCAACCAAATGGCT
TTCACCAAACCGCTACCAACACATAAGGATCTATGCACGTGTTATTTACA
GGCCTCTAAAATGGCTTGCCATAAAGATGCCAAAGACAGAATGTTTGTGC
ATTATGGGCCCTCATGGTTTGTTCCGCTTAATGCCAAATATGGTGATATG
CCATGGAGGGCAAGAGGAACAACGATACAAACGAAATTAGCAAAAATGGC
ATCTATAGACGGAATAATCTACGAAGAAGCAGTGATAAAGCTTGATCCAA
AGCTTCAGTATACAAAATATGACATGGAAATGACTTTAGCTCAAAATAAT
GTTCTACACGCATCGATTGTAACCAAATATTCTACGTGTGTGCACGGAAC
TTTTTGTTAAgctcttttgagaaatttgagtgtatttagaaaaatcaaca
tcgctttcattttctttgatgATATAACATAGGGGAACCAATTTAACCGA
AAAACTCTTTTCGCGATTAAAGAATTTAAGTGAGAGCTGATTTTTGCg
Run BLAST on NCBI

transcript from alignment at scaffold_199:132136..135000-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051151 ID=TCONS_00051151|Name=TCONS_00051151|organism=Clytia hemisphaerica|type=transcript|length=2865bp|location=Sequence derived from alignment at scaffold_199:132136..135000- (Clytia hemisphaerica)
GCTTTAATGTGATTCTTTTGATCCTCTGTATATGTTGCGTCGCACTTTAT
ACAAGTAAGTGGTAATTTTTTTTAGTTTTTTTTAATTAGAACGTCTTAAT
TTGGGCAGAGCCTGAAAGAATGTGCTTATTTTTTGACAATTTTGAGCCTA
AAATGTTTAAATTTAGCGTTTTTGAAATTCACTTAAATGTACAGAATGAC
CTTGCATAATAAAAATTGGCAAGTCTGCATTATTTTAAAGTTAAGAAGGC
TGAAATTCCAGGGTATTTTCCTACCGAGAACGAAAGTTTTGCCAGATTTT
CCAGTGGAGCTGGGGTCCCAGCGGGTCTGTGACACAGGGGTGTTTTAATG
GACTTCTTATTGATTTGTAGATTATGGGACATTTACAGTGTCCGAAGAAG
ATCCTGTCGACATAGAAGACATTGAAGTTTATCATCCATCACTCTCCGAA
AACAGTTGGTTGGCTGATACCAATAAAGATCACAAAGCGATCTACAGTCA
ACTGAAGCCTGTCCAATGGTACAAAGACAACTGGAAAGAAAAAGCAGATT
GTCCTTATCCATCCTATGTTCATAAGAAATATGAAAAATTATCTTGGTTC
CCGTTGTTTTTACATCACCAAATGAAAGTCAATTTATCTGCAATCCCACC
AAAACAATACAAGGAAGGATGCACCAGGTAATATCCTATAACTCTTATTC
CAACCAAAATATTCTTGTGTTGTTGATTTACACAAACTATAGAAGAACAG
GCTTCGATGGCCAAAATGTTAAGAACATTTTAAGACTTCACAGACCAGGT
AATGTCTAGGCTACGTCATATCTTGCTTCGTTTCAAGCATAAAACTCGTA
TTCTTCGGGATCATAGGCGCACTGTTCTTATTTTGAATTTTGGATTTCTC
TAGATACATCGCATGTGCGCACTGAGGTTTTGGTGAAACAATAGAGAGTT
TTCAAACCCAATCCAATGAATTGTGTTTTAAACACAATTCTTCTTTTATT
TAAAATCTCTTTTGATAAACTTCTTTTGTTAAAAACTTCTATTATGCTTA
ATCCTATTAAAAAGCAAGTTCCCGGTGGGGTCACTAGTGGCCTCATTTAG
CGCAGTGCTTATAGACCAAGAGTAAGGTCTAAAAGCCTGGAGCTGTCAAT
TGTGTAGACTAGGTAATGCCTTATCTCGTATTCCAACAAAAAAATGTTTA
GTTGCTTTACACGTATTTTTTATATTAACAAACTACTATATAAGAACAAA
AGGCTTCGATGGCCAAAAATTTAAGAATAAGTTAAGAACATTTTAAGGCT
TTGAGGACTCTAAAACACCGCACTTTCTTAGGAAAACGGACAAAAATACC
CACAAAATGGTGAAAATAATAACATGCTAAGAACATCTATAGGCTTAAAT
CTAAAAAAGTTAAGAACATCCAAAGGCTTCAAAAATTGTTTAAGATATCC
CAAAGACAGAGACTTCGACATATAGTAAAAAAAGAGGGCAAATTTAAAGT
TAATGGTCTTTAGATGCAAATCTCTATGAGTTTTCCCGACAGCCTTTCCA
AAAGATCTTTCACTAGCAACATTGCCACTTGCACCTCCCTCGATGACTGG
CACATTATGTTATTATAACGACCATCTAGTATTATAAAGATGTCATGAAC
GTTAGACAGACAGTGTTTTGACATTATGTGCCAACTGGGTCCTAATTACA
AAATTTAATTCTTCATTTTTTTCCTAAGATTCATATATAAGTCACGAAAA
AACGTCGAGTAAAGCTCTGATCGGCTGAGACATACAAAGATTACCTCATA
CTCGGGGCATTTGAAAATATATGCTTATGTGTGCATTATTCAGCCAATCA
GAACTTTACTAAACGTTTTTTGGGGACTTTTTTATATGAATCTGCTAATC
GGAAATTTGTGTATTTATTCTGTAATAGATTCTGGCATGCACAACCACAA
ACAGACTTTGGAGAGCTTCCACATCGCAAACTGACTTGGAAAGAACAAAA
ACCGCCACCAAATTATGTGCGCCCTAATTGTTCTTTTGGACAAGGTACCA
AGCCATGGACACGTTGCTCAAGAAAGCATCAAGAATTATGGAGTTTGCTT
GACCAATCAGGCATCATTTATTTCGCGCGATCAGGATCAGAACTTGGAGT
CATCAGAAACGGCACGTATCTTTCACACGACGGCGATATGGATGTCTATG
TGGATTATCCTCCAGAGAAATTTATCAAACTTATTGGAGATAAACTTACA
CCACGACCTTACGGAGATCAGTCAATAGGAAGTGTTAAAGCTGAAACACA
TTGGGATGTACCTGGTTGTCCTAAACTTAATATGGTTTTCAATGATTGGA
TGGTCAACCAAATGGCTTTCACCAAACCGCTACCAACACATAAGGATCTA
TGCACGTGTTATTTACAGGCCTCTAAAATGGCTTGCCATAAAGATGCCAA
AGACAGAATGTTTGTGCATTATGGGCCCTCATGGTTTGTTCCGCTTAATG
CCAAATATGGTGATATGCCATGGAGGGCAAGAGGAACAACGATACAAACG
AAATTAGCAAAAATGGCATCTATAGACGGAATAATCTACGAAGAAGCAGT
GATAAAGCTTGATCCAAAGCTTCAGTATACAAAATATGACATGGAAATGA
CTTTAGCTCAAAATAATGTTCTACACGCATCGATTGTAACCAAATATTCT
ACGTGTGTGCACGGAACTTTTTGTTAAGCTCTTTTGAGAAATTTGAGTGT
ATTTAGAAAAATCAACATCGCTTTCATTTTCTTTGATGATATAACATAGG
GGAACCAATTTAACCGAAAAACTCTTTTCGCGATTAAAGAATTTAAGTGA
GAGCTGATTTTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032422XLOC_032422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051151-exon-scaffold_199-1575043694:134947..135000TCONS_00051151-exon-scaffold_199-1575043694:134947..135000Clytia hemisphaericaexon
TCONS_00051151-exon-scaffold_199-1575043694:134324..134630TCONS_00051151-exon-scaffold_199-1575043694:134324..134630Clytia hemisphaericaexon
TCONS_00051151-exon-scaffold_199-1575043694:132136..133072TCONS_00051151-exon-scaffold_199-1575043694:132136..133072Clytia hemisphaericaexon
TCONS_00051151-exon-scaffold_199-1510915933:134947..135000TCONS_00051151-exon-scaffold_199-1510915933:134947..135000Clytia hemisphaericaexon
TCONS_00051151-exon-scaffold_199-1510915933:134324..134630TCONS_00051151-exon-scaffold_199-1510915933:134324..134630Clytia hemisphaericaexon
TCONS_00051151-exon-scaffold_199-1510915933:132136..133072TCONS_00051151-exon-scaffold_199-1510915933:132136..133072Clytia hemisphaericaexon
TCONS_00051151-exon-scaffold_199-1491911889:134947..135000TCONS_00051151-exon-scaffold_199-1491911889:134947..135000Clytia hemisphaericaexon
TCONS_00051151-exon-scaffold_199-1491911889:134324..134630TCONS_00051151-exon-scaffold_199-1491911889:134324..134630Clytia hemisphaericaexon
TCONS_00051151-exon-scaffold_199-1491911889:132136..133072TCONS_00051151-exon-scaffold_199-1491911889:132136..133072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_199supercontigscaffold_199:132136..135000 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.47496	8.19908	6.92395	3.68353	0	0	0	0	16.4434	25.9679	11.5722	12.088	0	0	0	0	12.2093	7.66581	0	0.604376	3.03521	5.68911	7.68867	6.68794	1.46503	0	12.5622	9.15613	1.92337	2.56037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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