TCONS_00051080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051080
Unique NameTCONS_00051080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051080 ID=TCONS_00051080|Name=TCONS_00051080|organism=Clytia hemisphaerica|type=transcript|length=1825bp
ctggagcgaaaacgaaagttccgaatgtggtgctggagcgaaaacgaaag
tgccgaatGTGGTGCTGCGAAAGTGGTGTTGAATGTGGTGCTACCAATGT
GGTGCTGGCTtgcttttggtcaaaattttggtaCCTAATCCTGGTTTGCT
GCACAGCAGACTTACTTGGTATTGGCAGCAAAATGGAATTCAAAGCAGCT
AGCTGCTTTCTCCTTCTTCTCTTACCACTGATAAATGGCCAAAGCTCAGA
TTTATTTATTTCTGTTAACCCTGAAACAAACATGCTTGTCGACAGTTTAG
GAAGAGAGCGAATTTTCCACGGGACAAACGTTGTCGTAAAACACAAACCA
TTTCATCCAGAATTGGAAGGGTTTGATGAACATTCCTTTTCAGAAACTGA
TATGAAGCTGCTACAAAGTCTTGGCTTGAATACCATAAGATTGGGAATGA
TGATGCCCGGTTATGTTCCGCAAAGAGGAGAATATAATGAAACCTACATT
GAAACAGTTGGTACTATCGTCAAATTGGCTGCAAAATATGGTATCTACAC
CCTACTTGATATGCATCAAGATGTTTTTTCACCAAAACTTTGTGTTGAAG
GAATGCCTGATTGGATTGTTAATACAGGTGATGCAAAACCATTTCCATAT
CCATTAACTGAAGAACCATACAAAATCAACCCAGAAACTGGATATCCCTA
CCCTGAGGATTGTGCAAGATTACCATGGggaaattattactttgctgAGG
CAGCTGCTAAAGCTTTCCAAAGTTTGTACAGCAACGTTGATGGTTTAAGA
GACGAATGGGCAAATTTCTGGAGAAAAACAGCAgaatatttccaaaaata
tccGAGTGTAGTTGGCTATGAATTGATCAATGAACCTTTCTGTGGTGACA
TCTATAAGAATCCTCTGTTGTTGGTACCTGGCATCGCTGACAAATTGAAC
CTTGAACCTGCATACGATGTTTTGCAAAAAGCTATTCGTCAAGTTGATGA
TCAACATGCAATCTTCTTTGAAGGAGTCACTTGGGATTTCTTTGAAGTTG
GATTCTCAAAAGTTCCAGGGGGTGCTGAATATCAAAACAGAAGTGTATTG
AGTTACCATTATTATGAACCACCAGATTTCTCGAAAACCCTAGATTTTGC
TGCTAGGATGCAGGATCTCAAACGTTTGAAATGTGGAGGCTTTTTGACAG
AGCTCTTAACAGTCGGTACAGCTGATAAATTCAAGAATATGTTTGAGATT
ATGGATTTTGCTGATCAATATAAACAAAGCTGGCATGGTTGGTTGTACAA
ATCTTACCCAGAAAACAGCAACGGTACAGACTCTTCGGATGTCTTGGTTC
AAAACACAAGTCGTACTTATCCTCAAGCAGTTGCTGGTAACattcaaaat
tatcatttcaacAAAGATACAAAAGAGTTTAGCTTGTCTTACAAAATCAA
ACCGAATTGTAAAAGCACCTTGACAGAGATTTACTTCAACAAGGAAATGC
ATTACCCAAATGACTTTGAATATAAATTGACACCTGCTGACCATATTCAG
ATGACGGTTAGTGATAATGGCTTCCTAATATTATTGAACCACGATGGTGC
TTTAAACGCAGGAGACCTTATTTCGTTTACAATGAACCCTAAATAAACTT
CAGAGAAATTATACGATAATTCTGCCACAAAACTTTGCTTGGATGGAAAA
ACAGTTCTAACAACTTAAATCAAAGCAAACTCTTCCATTTACTTTAGTAA
GATTTCTAGGTAaatttttgatataattttaaCAATAATATTTTGATTAC
AGATATACTTTATAATATATGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_193:316857..322334-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051080 ID=TCONS_00051080|Name=TCONS_00051080|organism=Clytia hemisphaerica|type=transcript|length=5478bp|location=Sequence derived from alignment at scaffold_193:316857..322334- (Clytia hemisphaerica)
CTGGAGCGAAAACGAAAGTTCCGAATGTGGTGCTGGAGCGAAAACGAAAG
TGCCGAATGTGGTGCTGCGAAAGTGGTGTTGAATGTGGTGCTACCAATGT
GGTGCTGGCTTGCTTTTGGTCAAAATTTTGGTACCTAATCCTGGTTTGCT
GCACAGCAGACTTACTTGGTATTGGCAGCAAAATGGAATTCAAAGCAGCT
AGCTGCTTTCTCCTTCTTCTCTTACCACTGATAAATGGCCAAAGCTCAGA
TTTATTTATTTCTGTTAACCCTGAAACAAACATGCTTGTCGACAGTTTAG
GAAGAGAGCGAATTTTCCACGGGACAAACGTTGTCGTAAAACACAAACCA
TTTCATCCAGAATTGGAAGGGTTTGATGAACATTCCTTTTCAGAAACTGA
TATGAAGCTGCTACAAAGTCTTGGCTTGAATACCATAAGATTGGGTAAGA
ATTATTCATGTTCAGCTTGGTAAAATCCATGTGTTTCCATTTCAAGAAAT
TATAAGTCATCGATGACGTAAGAAATCATCTATCTATTTATATATTTAAG
TAGTGACAAAACATACATGTTCGTTCTCCCTACATAATCAACAATAAATC
ACTTGCCCCCTTTTTTTCCCTGATAAGGTATATAATATATGAAGACTCCC
CGGATTGGCGAACATGAAGAAATAGAAGAAAAACTAAAATTCACTCCCTG
GAAAATGTTTAGACTGTTTTATTTTGTTCAATCGCAAATGCTTGTGAAAG
CGCCAAATATTTTAGTATCCAATTACGGCGATATTGATTGTTTTATTTTG
TCCAATCAAGAAATTGCCGTACAATTGTTTAGAAAGAAGTATCCAATGAA
ATGAAGGTAAAGCGCTTTCGTCCAATCAGAAAGGATATATTCTTTGAAAA
AATAACGTTCGCATCAAATTCCCGCTTTTGTTTGAGAACTAAAGATAAGA
AAAAATTCATCTATTAGAATCAACGATTGAAACAAATAAAGTTAAATGAC
CACTCGTTATCCAAGGTGCCAAAAAACCATTAGCCCCGAAAAGTAGGGCC
AGTCATTAACCTTCATCATACACGGCAATCTCATTGGTTGAAATTCAAAA
AAGACTTTCCTATGGAGCAAATTACGGAAGCAACTGAGAAGAAGAGACCA
CTTTCGTTTTTTTTATTGCAGATTTCGATATAAAAAATTGGATGGGGAAT
ACTGCTGTCAATGTGTCAACTATGTAAGCATTTTATTGTTAGAATAGAAA
AGAAAAAAGAGGTATGTCTAGTCTAGCCTAATTGTCAGCTGTCAGGGGGG
CGTAAAAAGAATGTGAGAGCTTATTTGTATCGAACGCAAAACACACAGTA
TTTACCAAGCTGATGTTTGGTGGTGGTTCTGTCAGCTTGGGAATTACTGT
GTGTTTTGTTTTTGATATAAAAGTCTCTATATATAACGCCCCCTGACAGC
TGACAATTAGGTTAGCTCTTTTCTCAGTCATATTCTAACAATACAATGCT
TACATAGTTGACGCATAATACACATTGACAGAAGTATTCTCCCTTGCAAT
GTTTATATTGAAATCTGTAATGAAAACGCAGTGGTCTTTTCTTCTCAGTG
GCTTCTGTAAGTTGCTCCCTCTGAAAGTCTTTTTTAAATTCAGCCAATGA
GATTGCTGTGAATGATGGAAGTCAACGACCTTGCCTAATTTTTGGGACTA
ATGGCTTTTCAGCGCCTTGGATTAGTAAGTCACATTAGCGTCCCACCAAA
AAATGCTTGTCAAAGATTGTAATGCTGTTAAAGCGCTTTATCGTTTACTT
ATTTGCAGTTGCAATGGTTGCAAATACCAGTTAGTCACACAAGGAGATCA
AGGTTTCTGAAAATATAATATCAGTCATCTACAGGATGTATTTGCAACAA
AGGATGAGAGTTGCCTCAATCAAGTTCCCAAGAGAATTACTCTTTTGTGC
TTAATTGTAGGGGGTGGAATAAGCAGGGGGTCGGTACTCTGGGAGAAAAC
CTATGAAATGGGGGGTCAATATTAAATGATTTAGTGGTGATTTTCCCAAA
AAACCCTAGCAAAATGAAGGTTTCGGCACTTTTTCAGGAAAACTTCATAA
AATAGGGGGTCATTATAAAATGCTAATGTAATGGGCTAAACGCAATGCCA
TTTTCGATAATTAAAAACTCCAGCACTAAAGTAATGATAAGAAAAAAATT
AATGCAAACTTATAATAATTATGCATTATTGTGTCATTGTGTTAGTGCTG
GAGTGCTTTGATAACATCCAACATGACATTGCGTCTAGCAAAAATCGAAA
TCGGCCAAAAACTGATTTTGACGTTATACATCGAGAAAAAACACGTCAAA
AAGACAATTTAAATGACGTCATTATTGAAAAAAGGCGATAATTCCGATTA
ACTTACTACAATCAAAGCAAAATTTTGACTGGAGATGTAGATTAACGATT
CTGAAATATTTTATGAAAAAAAATTTGAAAATTCATGATGACGTCAGCAT
TTTTTGACGTATTTTAACTTTTCCCGACAACAAATGACATTTGTCATTCA
AATTTTTTGAAAATTTTTGAACAAATATTTCAGAATCATCAATTTACAAC
TCCAGTCAAAATTTGGTTTTGATTGCATTAATAAAATTGAAGTTATCGCT
GTTTTTATCAATAATGACGTCATTTGAATCTTACTTGTGACGTGTTTTTT
CGATGTATTTTATAACGTCAAGTTCAATTTTTGACTGATATCTTGAGATT
GGTTTAATGCAAATTTTTGACCCAGCACTTTTCGAAATCCGCTCGTTGAT
ATGATTCTTTTGAGCTATATATGAACGCTAAGGAATAACTGGAAGCGGTG
CGCGTCACGCAAAATATACTTGGGACATGCCTTGTTTCACCCGAGAAATC
TATTGCTTTTAGAGAAAATTGGACAGATGTGATGTATTTGTGTAGGACGT
GATAGCATTTGAAATCCAAAGATTAGCAGGGCAATAATATTACATGAACG
ATTAACAACGGTTAAGACAAGTAACACAATAATACTCAACAATACTTGAA
TTCTTGCATAACGGAGATCCTAAGATTAATATATGCACATACCGGGTGTG
TAAAAACGCCCCTATTTTACAATCTTTGACGTACATTTATCTATTTTGTC
GAGCTGCTTGAATTTTTTTGTGAGTGTTTACATATATCCGTTTCCTCCTT
CCTACTACTCATACGGCTTGGATAAGCAAGCATTGAATGTTGTCATGCTG
TATTTCTTTCAAAAATTAAGTAACCACAAATAGGTGTCATAACTAAAAAA
GCCTTAAGGCTTATAAATAAGCCTCTCGATCCCGCCTGAGGTTAAGACAA
GTACCACCCAATCAGTTGTCTCCATTGAATTATCAGCTTTTTTATGCTTT
AACTGATGGCGCTAGATAATTCCAATGTCTGTTTTTCGAATCCAAAAGAT
AACGTAATTCGAAACAGAACATCAGATCTTCTATTTTGAAGTCATTGCAC
TGCACTGTAACCTTGTAACGTAACATTTTTATGACGCATTGTTGGGAGAA
CTCCCCCCTGCATCATATCAGCCTACACAGGATATTCTCTAGTGTCGATC
AGTAATGTGAATAAAGCCTAGGATTCATGCCAACAATGTTCCAATTTTTT
CAGGAATGATGATGCCCGGTTATGTTCCGCAAAGAGGAGAATATAATGAA
ACCTACATTGAAACAGTTGGTACTATCGTCAAATTGGCTGCAAAATATGG
TATCTACACCCTACTTGATATGCATCAAGATGTTTTTTCACCAAAACTTT
GTGTTGAAGGAATGCCTGATTGGATTGTTAATACAGGTGAGTGTTTAAAA
AATATCGTTTGGAATTCTTTTGGTGTATCTTATATCATAAAACTGAATAA
TAAAGACGACTGTTCAATTTAAAAACAGCTTAAAAGGAATGACTGGCTGT
GAAATGTTTAAATATTTAACCTGATGTTTACCTAATGGCTATATACCTCT
TTAAATTCTTTTAGAAAAGCTCTATACCAAGATATAATTCTTTCCTTATG
TATACTTTATCATAATAACTGTTTGTTCCCTAATTATCAGGTGATGCAAA
ACCATTTCCATATCCATTAACTGAAGAACCATACAAAATCAACCCAGAAA
CTGGATATCCCTACCCTGAGGATTGTGCAAGATTACCATGGGGAAATTAT
TACTTTGCTGAGGCAGCTGCTAAAGCTTTCCAAAGTTTGTACAGCAACGT
TGATGGTTTAAGAGACGAATGGGCAAATTTCTGGAGAAAAACAGCAGAAT
ATTTCCAAAAATATCCGAGTGTAGTTGGCTATGAATTGATCAATGAACCT
TTCTGTGGTGACATCTATAAGTAAGTCTTCACTTGGTGTTTTTACCAACC
TAAATTAGTATGTAATTCGGACTCGTATTATCTTACATTTATAGATTTCC
CAAAGGTTGTTTTCTATTGAGCATATTTGGTTATTATGTATCAATAGGTT
ATTTTTAGGTTTAATTTGGTTTTGAAAAGGAGCATTGATAAAAGGAATCT
CCTTATTTAGGAATCCTCTGTTGTTGGTACCTGGCATCGCTGACAAATTG
AACCTTGAACCTGCATACGATGTTTTGCAAAAAGCTATTCGTCAAGTTGA
TGATCAACATGCAATCTTCTTTGAAGGAGTCACTTGGGATTTCTTTGAAG
TTGGATTCTCAAAAGTTCCAGGGGGTGCTGAATATCAAAACAGAAGTGTA
TTGAGTTACCATTATTATGAACCACCAGATTTCTCGAAAACCCTAGATTT
TGCTGCTAGGATGCAGGATCTCAAACGTTTGAAATGTGGAGGCTTTTTGA
CAGAGCTCTTAACAGTCGGTACAGCTGATAAATTCAAGAATATGTTTGAG
ATTATGGATTTTGCTGATCAATATAAACAAAGCTGGCATGGTTGGTTGTA
CAAATCTTACCCAGAAAACAGCAACGGTACAGACTCTTCGGATGTCTTGG
TTCAAAACACAAGTCGTACTTATCCTCAAGCAGTTGCTGGTAACATTCAA
AATTATCATTTCAACAAAGATACAAAAGAGTTTAGCTTGTCTTACAAAAT
CAAACCGAATTGTAAAAGCACCTTGACAGAGATTTACTTCAACAAGGAAA
TGCATTACCCAAATGACTTTGAATATAAATTGACACCTGCTGACCATATT
CAGATGACGGTTAGTGATAATGGCTTCCTAATATTATTGAACCACGATGG
TGCTTTAAACGCAGGAGACCTTATTTCGTTTACAATGAACCCTAAATAAA
CTTCAGAGAAATTATACGATAATTCTGCCACAAAACTTTGCTTGGATGGA
AAAACAGTTCTAACAACTTAAATCAAAGCAAACTCTTCCATTTACTTTAG
TAAGATTTCTAGGTAAATTTTTGATATAATTTTAACAATAATATTTTGAT
TACAGATATACTTTATAATATATGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032373XLOC_032373Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051080-exon-scaffold_193-1575043694:321891..322334TCONS_00051080-exon-scaffold_193-1575043694:321891..322334Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1575043694:318499..318681TCONS_00051080-exon-scaffold_193-1575043694:318499..318681Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1575043694:317965..318244TCONS_00051080-exon-scaffold_193-1575043694:317965..318244Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1575043694:316857..317774TCONS_00051080-exon-scaffold_193-1575043694:316857..317774Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1510915933:321891..322334TCONS_00051080-exon-scaffold_193-1510915933:321891..322334Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1510915933:318499..318681TCONS_00051080-exon-scaffold_193-1510915933:318499..318681Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1510915933:317965..318244TCONS_00051080-exon-scaffold_193-1510915933:317965..318244Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1510915933:316857..317774TCONS_00051080-exon-scaffold_193-1510915933:316857..317774Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1491911889:321891..322334TCONS_00051080-exon-scaffold_193-1491911889:321891..322334Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1491911889:318499..318681TCONS_00051080-exon-scaffold_193-1491911889:318499..318681Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1491911889:317965..318244TCONS_00051080-exon-scaffold_193-1491911889:317965..318244Clytia hemisphaericaexon
TCONS_00051080-exon-scaffold_193-1491911889:316857..317774TCONS_00051080-exon-scaffold_193-1491911889:316857..317774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:316857..322334 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.46321	2.17381	1.56048	1.17027	2.92402	2.12158	3.8233	4.53837	8.55113	7.88342	8.51928	5.84808	9.6114	7.57641	21.1033	16.756	20.5279	20.1055	30.8329	30.9101	27.3172	28.4994	43.3335	55.7951	17.9425	16.4431	17.9232	20.901	157.862	127.632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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