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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050908 ID=TCONS_00050908|Name=TCONS_00050908|organism=Clytia hemisphaerica|type=transcript|length=3291bpRun BLAST on NCBI transcript from alignment at scaffold_19:216514..234787- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050908 ID=TCONS_00050908|Name=TCONS_00050908|organism=Clytia hemisphaerica|type=transcript|length=18274bp|location=Sequence derived from alignment at scaffold_19:216514..234787- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050908 vs. Swiss-Prot (Human)
Match: VPP1 (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3) HSP 1 Score: 907.516 bits (2344), Expect = 0.000e+0 Identity = 498/858 (58.04%), Postives = 611/858 (71.21%), Query Frame = 3
Query: 48 LFRSEEMKLCQLYLQTESAYGCVSELGEIGLVEFRDLNPNVNAFQRKFVAEVRRCDEMERKLRFMLKEIDKAEILVQDNGENPEAPHPNXXXXXXXXXXXXXXXXXXSNINYEQLQKTFMELNELKCILRKTQSFFEEAEHQLFHDPVTGSDSKRAXXXXXELSLLAETGYATPALGGRLGFVAGVIQREKVPGFERLLWRACRGNVFFKHTPIDEQLYDPSTGDVTYKSVFIIFFQGDQLKSRVKKICEGFKATLYPCPETSAERREMVIGVATRIEDVQAVLNQTQDHRHRLLQTIAKNMNDWLIKVKKIKAIYHTMNMFNIDVTSKALIAECWAPVADLDHIHHALDEGTRKSGSAVPSIIHQMKTRETPPTFNRTNKFTNGFQAIIDAYGVADYQEVNPSLYAIITFPFLFSVMFGDFGHGIIMSVFAYWMIKMERKLNNWKGGGEMFDMIFSGRYVILLMGLFSIYSGLIYNDIFSKSLRFFDSPWTHLNVTKETDYKYNIHKMEKLANSTDLFMFNP-LDVESKTPYLFGLDPIWQLATNKLTFTNSLKMKLSVIFGVTHMTFGVILGLLNHWHFKDPLKIWFEFVPQLLFISCIFGYLVIVIFYKWVAFDIH-SQYQPSILLGLIGMFLHFGAEIKEEDLLYSGQQGLQPFXXXXXXXXXXXXXXGRPLILRYRNKNGHLESPRYQKLDQDDDVHGNGGHVE----IMHNDTSILGDDGFAEADDDVKEEPFDFGEIFITQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWSMVFKMGLGMNGGIGSIAIFLFFGAWAALTIGILLIMEGLSAFLHTLRLHWVEFNGKFYHGTGIKFAPFCFKTI 2603
LFRSEEM L QL+LQ+E+AY CVSELGE+G V+FRDLNP+VN FQRKFV EVRRC+EM+RKLRF+ KEI KA I + D GENPE P P +M++LE E++E E+KE N N E L++ F+EL ELK ILRKTQ FF+E DP ++ L +E G TP RLGFVAGVI RE++P FER+LWR CRGNVF + I+ L DP TGD +KSVFIIFFQGDQLK+RVKKICEGF+A+LYPCPET ER+EM GV TRI+D+Q VLNQT+DHR R+LQ AKN+ W IKV+K+KAIYHT+N+ NIDVT K LIAE W PV DLD I AL GT SGS VPSI+++M+T +TPPT+N+TNKFT GFQ I+DAYG+ Y+E+NP+ Y IITFPFLF+VMFGDFGHGI+M++FA WM+ E ++ + K EMF +FSGRY+ILLMG+FS+Y+GLIYND FSKSL F S W+ V Y + E+ + NP L PY FG+DPIW +ATNKLTF NS KMK+SVI G+ HM FGV L L NH +FK PL I+F F+P+++F++ +FGYLVI+IFYKW A+D H S+ PS+L+ I MFL F +LYSGQ+G+Q FLVVVA+L VP MLL +PL+LR + +L L+ GNG E I H+ S +D AD+ ++E FDFG+ + QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLW+MV +GL + G + +F FF A+A LT+ ILLIMEGLSAFLH LRLHWVEF KFY GTG KF PF F+ I
Sbjct: 4 LFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMA-----DP-------DLLEESSSLLEPSEMGRGTPL---RLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEIENPLEDPVTGDYVHKSVFIIFFQGDQLKNRVKKICEGFRASLYPCPETPQERKEMASGVNTRIDDLQMVLNQTEDHRQRVLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLIAEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTYGFQNIVDAYGIGTYREINPAPYTIITFPFLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSTVFSGRYIILLMGVFSMYTGLIYNDCFSKSLNIFGSSWS---VRPMFTYNWT----EETLRGNPVLQLNPALPGVFGGPYPFGIDPIWNIATNKLTFLNSFKMKMSVILGIIHMLFGVSLSLFNHIYFKKPLNIYFGFIPEIIFMTSLFGYLVILIFYKWTAYDAHTSENAPSLLIHFINMFL-FSYPESGYSMLYSGQKGIQCFLVVVALLCVPWMLLFKPLVLRRQ----YLRRKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSED----ADEPSEDEVFDFGDTMVHQAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLSVKSLAGGLVLFFFFTAFATLTVAILLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSFEHI 830 The following BLAST results are available for this feature:
BLAST of TCONS_00050908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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