TCONS_00050781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050781
Unique NameTCONS_00050781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050781 ID=TCONS_00050781|Name=TCONS_00050781|organism=Clytia hemisphaerica|type=transcript|length=825bp
AAGCCTCTGTGCCTTTAGAAGCGTAACTTATATCGACTAAATAGGCCTtt
tgtttgaaagaaattttaaaagctaaaggagaaaaagagagaatttTCAA
ANGTACCGGATCCAACTTCCTAAACGATGAATAAACCCAGAATCGGCGGG
TTTTCGCAACCAGCCGGGTTGCCCAGACTCAAGGCCTGGCCTCTCATCAC
CGTGCACAGCCTAATAGCTACAGGAAACTGTCCATCGCGCGTAATTCGTG
TTGGACAAAATCTCTTGCTGTATGAAATGGAAAACACAAAGCCTAAAACA
ACGCTATGGACAGTTTCCCTACCGTATCATCCTCGCTGCTGAGAGACTCC
TAACCGTACAGCCGGTCCGGTAGGAGAATTTATCACAACCGTGTGCGCCC
GAAAACTGAGGAGGTCCGCCACCAGCCGGGATAAAGCCGGACTTTGTTCC
GAATCTGACCTCCCTATCGAGANGAATCTCCCAATACCAGCgacaatcac
cttggccaacatctcccaataccagcgacaatcaccttggccaacatctc
ccAATACCAACGACAATCCCCTTGGCCATCATCTCCAAAAACCAGCGACA
ATCACCTCGGCCCAACATCTCATCACCACCCATCTCCTTTGCCAAATTTA
GTTGCAGATATTGTTATATACTTGATAATATCTTGATGGTTTGTTTCATA
CAGTTTTCCCCCAAAAAAAATACTGTTTGAATGTTGTCTCCTTTCGTTTC
GTGTGCTACGAAAATTGTACGCTTCACTGCACAAACTACATTTATATCCA
TGAATGTGCATACTCTATATCTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_186:115876..117142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050781 ID=TCONS_00050781|Name=TCONS_00050781|organism=Clytia hemisphaerica|type=transcript|length=1267bp|location=Sequence derived from alignment at scaffold_186:115876..117142+ (Clytia hemisphaerica)
AAGCCTCTGTGCCTTTAGAAGCGTAACTTATATCGACTAAATAGGCCTtt tgtttgaaagaaattttaaaagctaaaggagaaaaagagagaatttTCAA ANGTACCGGATCCAACTTCCTAAACGATGAATAAACCCAGAATCGGCGGG TTTTCGCAACCAGCCGGGTTGCCCAGACTCAAGGCCTGGCCTCTCATCAC CGTGCACAGCCTAATAGCTACAGGAAACTGTCCATCGCGCGTAATTCGTG TTGGACAAAATCTCTTGCTGTATGAAATGGAAAACACAAAGCCTAAAACA ACGCTATGGACAGTTTCCCTACCGTATCATCCTCGCAGCTGAGANCGGCC agaaatataataaaattgttCCCATTTTTGCGAGCCCCTTGCATAACACC CAAAACCTAAttccaaataaaaatgttaaatatcACACAATCAAACATCT GTTAGAGTTCATACCAATCATATTGAAAGCTTTTTATCCATATGGCTATT TCTTGTTCCACCTTGTTCCAAGCAACTGAACTTTAGCATTCTCTTAAAGT ATGTAAATAAAATGATAACCTGGGACAATATAAAGCTATGTNAATACTGA AACTTAAGTGAGATCCGCCACCAGCCGGGAAGGAGCCGGACTTTGTTCCG AATCTGATCTCCTTATCACGATGGGTTTGCTTCAGAATCAGCGGATTTTC GCAACCAGCCGGGTTGCCCAGACAGCCGGCCTGGATCCTCACAACTTGCA CTACAAACAATTACACTAACATCCTCGCTGCTGAGAGACTCCTAACCGTA CAGCCGGTCCGGTAGGAGAATTTATCACAACCGTGTGCGCCCGAAAACTG AGGAGGTCCGCCACCAGCCGGGATAAAGCCGGACTTTGTTCCGAATCTGA CCTCCCTATCGAGANGAATCTCCCAATACCAGCgacaatcaccttggcca acatctcccaataccagcgacaatcaccttggccaacatctcccAATACC AACGACAATCCCCTTGGCCATCATCTCCAAAAACCAGCGACAATCACCTC GGCCCAACATCTCATCACCACCCATCTCCTTTGCCAAATTTAGTTGCAGA TATTGTTATATACTTGATAATATCTTGATGGTTTGTTTCATACAGTTTTC CCCCAAAAAAAATACTGTTTGAATGTTGTCTCCTTTCGTTTCGTGTGCTA CGAAAATTGTACGCTTCACTGCACAAACTACATTTATATCCATGAATGTG CATACTCTATATCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032166XLOC_032166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050781-exon-scaffold_186-1491911889:115876..116203TCONS_00050781-exon-scaffold_186-1491911889:115876..116203Clytia hemisphaericaexon
TCONS_00050781-exon-scaffold_186-1510915933:115876..116203TCONS_00050781-exon-scaffold_186-1510915933:115876..116203Clytia hemisphaericaexon
TCONS_00050781-exon-scaffold_186-1575043694:115876..116203TCONS_00050781-exon-scaffold_186-1575043694:115876..116203Clytia hemisphaericaexon
TCONS_00050781-exon-scaffold_186-1491911889:116646..117142TCONS_00050781-exon-scaffold_186-1491911889:116646..117142Clytia hemisphaericaexon
TCONS_00050781-exon-scaffold_186-1510915933:116646..117142TCONS_00050781-exon-scaffold_186-1510915933:116646..117142Clytia hemisphaericaexon
TCONS_00050781-exon-scaffold_186-1575043694:116646..117142TCONS_00050781-exon-scaffold_186-1575043694:116646..117142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_186supercontigscaffold_186:115876..117142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252242 0.190393 0 0 0 0.403725 0 0.356411 0.194232 0 0.346804 0 0.119472 0.673493 0.49674 0.684113 0.813968 0.187817 0 0 2.53867 1.45175 0.482475 0 0 0 0.711026 0.232301 0 0.533756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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