TCONS_00050657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050657
Unique NameTCONS_00050657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050657 ID=TCONS_00050657|Name=TCONS_00050657|organism=Clytia hemisphaerica|type=transcript|length=1905bp
tccaaatttgataaaagattACAAACATTTTTACTTAAGGTGAGTCTGTA
ACTTACACAAGCCCTTTGATTTCAATTCCAAGTTGCGAAGGGGTGGTTTC
GCTTTTCAACTTTTACTATCAAAACCATTCGAAACAAACCACCACTCCCA
GCCGGCCTCAGCAAGTTTTTGTATTCAGTTTTACTACAgtatctttcaaa
atttgagacaaAATGTTGAGGTTTCTTGGGAAAGTGGAGAATGTAGTACG
TTTCCAAAAGTTCTGTGGACTTTCTTGGGATGAGAATGCTGCATCTGGTG
TGGATTGGAAGCAGAAAAAGGAATCAAAAGATTCAAAACGATTTTCTTCG
ACAAGTAGTGACGAAGGGAAGGATAGTGCATACAATAGCCATAATTCTTC
AGAAGATAGCTCTTCTGACCACGAGTTACCAACAGATTTTAAGAACACAC
AACCTGTTAAATACACATACAATTCATTTCTTCATAACATTTTCTTCTTT
GGAGCTGAGCTtggaaatgaaatattttatatcaCTTTTCTACCGTTTGT
TTATTGGAATGTTGATGACTACATAGCAAGACGTCTTATCATGCTATGGG
TATTTAATATGTATGCTGGCCAAGGTTTGAAAGATGTCTTGTGCTGGCCT
AGACCACGCTCACCACCTGTTTTACGATTAGAAACAAATTATGCGGCAGA
ATATGGAATGCCATCAACACACGCTATTGCTGGCTCCATTATACCCTTTG
GTTTAGTCTATTTTAGTTATGGAAGGTTTGAGTATCCATTGTTATTtggt
ttgttgttttttgttgcaTGGACAAGTTTGGTTTGTTTGAGCAGGATTTA
CCTTGGCATGCATACCTTTCAGGACATTGTTGCTGGACTTTCAATGGCGG
CATTTGTAACAGCCTTGTGGCTTCCGTATCTTGATGGCACACTTGAAATC
TTTCTCTCGTCTGCAAATGCATGGATTTTTATAATGCTTGTTCCCATTTT
GATGATTTATGCTTTCCCTACAAAATCTATGGTCACACGAAACGATACTG
CTACAATTATTGCTGTTGGTTGTGGATGTATGTTAGCTTCGTGGAATGAA
TACTATATAGATCAAATACCGTTACCAAACCCTTATGGAGAACCTGTCAA
ACTAATGTTTGGTACAGGATTTATCGCTTGGATCTTGTTCAGTGCAACAC
GTTTTATAATGGGCGTTGCTATATTGATTTCAATCAAAATTATAATCAAA
GCTACAATGAAAACTATTGCCAACTTCTTTGAATCTCCAGAAATTTCAAA
TAAGAAGACAACAGAGAGAGGAGCAAACCAAATGTTTACACTTCCCTATA
TTTTTACTTGCTATGGTGCCATTGGGTATGCTGCAGCTTATATTGCACCT
AAAGCTTTTGAATTCGTTGGActtattcattaaaaaaatgactGGATAGA
ATTTTCATTCTGTAGTGATTTCAGTTTGAATTTACGACCTGATAGTATAA
TTAGTATAATATTGTCGATTTTAATACAAAATCAAGGACAGTTCGTTATG
acatctttttttcaaaattgggaGTTTTTTCTTCGCATTATTCTTTTCTG
TATTTCtagaaattttaatttacatCTTACAGTAGAGCCGTAAATAGCAA
GGAACTCTTTATTTTTATACCATGATAAGTTATTCTTTAAATGCACCTCT
TAGGTTGGAAAACACTGTAAATAGACTTTATTTTAAGCAATAATAAATAA
TACTTTTTCATGGAAATGTATTTTGATGATACAAGTGAGCTCCGTTTTGT
TGGTACTTTTGTGTCAATTTCATTTATGCCTCCTCTTAAGGCTGCTGGCA
TTCACTAACGgtttcgtgctccttatagtaTATAccacctggggttttgt
agagg
Run BLAST on NCBI

protein sequence of TCONS_00050657-protein

>TCONS_00050657-protein ID=TCONS_00050657-protein|Name=TCONS_00050657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MLRFLGKVENVVRFQKFCGLSWDENAASGVDWKQKKESKDSKRFSSTSSD
EGKDSAYNSHNSSEDSSSDHELPTDFKNTQPVKYTYNSFLHNIFFFGAEL
GNEIFYITFLPFVYWNVDDYIARRLIMLWVFNMYAGQGLKDVLCWPRPRS
PPVLRLETNYAAEYGMPSTHAIAGSIIPFGLVYFSYGRFEYPLLFGLLFF
VAWTSLVCLSRIYLGMHTFQDIVAGLSMAAFVTALWLPYLDGTLEIFLSS
ANAWIFIMLVPILMIYAFPTKSMVTRNDTATIIAVGCGCMLASWNEYYID
QIPLPNPYGEPVKLMFGTGFIAWILFSATRFIMGVAILISIKIIIKATMK
TIANFFESPEISNKKTTERGANQMFTLPYIFTCYGAIGYAAAYIAPKAFE
FVGLIH
Run BLAST on NCBI

transcript from alignment at scaffold_182:113207..117197+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050657 ID=TCONS_00050657|Name=TCONS_00050657|organism=Clytia hemisphaerica|type=transcript|length=3991bp|location=Sequence derived from alignment at scaffold_182:113207..117197+ (Clytia hemisphaerica)
tccaaatttgataaaagattACAAACATTTTTACTTAAGGTGAGTCTGTA ACTTACACAAGCCCTTTGATTTCAATTCCAAGTTGCGAAGGGGTGGTTTC GCTTTTCAACTTTTACTATCAAAACCATTCGAAACAAACCACCACTCCCA GCCGGCCTCAGCAAGTTTTTGTATTCAGTTTTACTACAgtatctttcaaa atttgagacaaAATGTTGAGGTTTCTTGGGAAAGTGGAGAATGTAGTACG TTTCCAAAAGTTCTGTGGACTTTCTTGGGATGAGAATGCTGCATCTGGTG TGGATTGGAAGCAGAAAAAGGAATCAAAAGATTCAAAACGATTTTCTTCG ACAAGTAGTGACGAAGGGAAGGATAGTGCATACAATAGCCATAATTCTTC AGAAGATAGCTCTTCTGACCACGAGTTACCAACAGATTTTAAGAACACAC AACCTGTTAAATACACATACAATTCATTTCTTCATAACATTTTCTTCTTT GGAGCTGAGCTtggaaatgaaatattttatatcaCTTTTCTACCGTTTGT TTATTGGAATGTTGATGACTACATAGCAAGACGTCTTATCATGCTATGGG TATTTAATATGTATGCTGGCCAAGGTTTGAAAGATGTCTTGTGCTGGCCT AGACCACGCTCACCACCTGTTTTACGATTAGAAACAAATTATGCGGCAGA ATATGGAATGCCATCAACACACGCTATTGCTGGCTCCATTATACCCTTTG GTTTAGTCTATTTTAGTTATGGAAGGTTTGAGGTAGGTTTTATGATACTC GAAATCCAAATATTATTTCTGCATTCTAATAATCTAAATTCCGGTGGGGG GGCacttgattttgaaaacgaccgtacgttcggcctaAAATCGGGTCTAT AATaaaatcagacccttacagtgcaggaaaaatttggctgaaaatcgacc cttattgcttatagtgcaatttttcgaaattttttgccctttttagggca aaattttttgaaatttctcaaattttacctcaaaatttggtattttctca aattttacacccttacagtgcacttttcaaagtccaaaaaacctaccctt aagagCCACACGTCCGGTATGTAGATCACTTGGAGTGACCGCCCCCCCCC CAATGTCAAGCTCTGAAACATCTGTACTTCCCCATCatttttaaatgtat ttttttaggtctctgttttttttctgtaattGAAGAGCTTCTAGAAAATt aagattaaaaaatcaaatctaCCTTGTATTTTTACAAGTTAtactgtgag tggtcctaaatccgacagccttgcctaaatccgaccccccaaataactgc tatgaaaaaaaatcaatgtttacaaacattccctctccaagctgaacgat aaactattgcaataactctcaaaataaaacatctaacaagatgactataa tgtcaagatttCAATTATTAATGTGATCATAAAGTGttaagttgtaaaaa taattacctccaTTATTCtgcaaaaggtttgtttttattttagtttgtat ttttgaaagaccccatcggatttaggtagggctgtcagatttagggCCAC TCACGGTAATACTAAATCCAAAAAGTTGATGGTAAATTTTTTAACGAAAT CTCAAGGTCTTACAAATACCATTCAAAATCTCATGGTTTGCATACTTCCA TGAAATTGCCAATAAGTTCTAATTCGGGGAATCTcctgattttcttttta attatctTTGTCATTGTTGggaatttgttaaaaaatcctTGTTTTTGGGT TCGCTACCAGTCTTACATTGTAGCATACATATAGGGGCATTTTCAGAGAG GTTGCAAAGGGTTTAAAGGTCACTTTTAAGGGGGTTTTGTGCAGATTTAC ATCACAATCAGAATGTTACTGTTTTTACATGAACACTCAAGGGGGGAGGG TATTACCACCACTTGTATACCACCACCCCATTTTAGGgaagtggtatttt agtacccatgtactaaaatttttaGGGATACTTTTAAATTCAAACACTGA TGCTTTATGAATTCTGTGAATTAAGTAAACATTAAAGACATTTGATTGGA tgcaaaaataattgaacttgggaaattttcgttaaatgggaaaattttaa aatttgttaaaaaattgcaataaTTCTGAATGAATcacgaaaaaaattca taaaattatgtactaattTTAGTAcataaatttacaaaaacaaatcCTCA AATTTTAGTCTGGGTAGTGGTATCCTGTCCTTTTTGGTATTTAGTACCCC ATGGTAGTCATTTTTAAACATACTGTCCTAGACTTTAGTAtctacccccc ccctggatCACTTCATCTCTCATCTCAAGGTTGGTGGATTGAGGATATTT TATTTGTAAGTAGCCAggttatttttttaattgttgatttataataaaaa taattttctgattaACTCTATTTTCAGTATCCATTGTTATTtggtttgtt gttttttgttgcaTGGACAAGTTTGGTTTGTTTGAGCAGGATTTACCTTG GCATGCATACCTTTCAGGTAACataattatcataattatcataattatcA TAATTAACATACACTCATTTTCTCTTTTTACAATGAGACTTTTTTTACAG GAACAATAACAAACAAGCTCTATCGCAATAACATgctgtttttcaaattt tatgtacagtattttttgtaaaatttcttctaattttgttaaaaatgaaa ataaaaatcttctAATTTTTAGTGCAAATGctgataaattttggaaaaat ctgcctttcttttctgaatttctttttctatgAAAGGAAGTAATATTTTT TGGAGAACTAATTGTTGCATATTTTAATTCTTACTAAATTTCAATTACTC GCCAAATTTATAGATACTTTTCAGATTGGtaacaattattttttattctt caatCCAGGACATTGTTGCTGGACTTTCAATGGCGGCATTTGTAACAGCC TTGTGGCTTCCGTATCTTGATGGCACACTTGAAATCTTTCTCTCGTCTGC AAATGCATGGATTTTTATAATGCTTGTTCCCATTTTGATGATTTATGCTT TCCCTACAAAATCTATGGTCACACGAAACGATACTGCTACAATTATTGCT GTTGGTTGTGGATGTATGTTAGCTTCGTGGAATGAATACTATATAGATCA AATACCGTTACCAAACCCTTATGGAGAACCTGTCAAACTAATGTTTGGTA CAGGATTTATCGCTTGGATCTTGTTCAGTGCAACACGTTTTATAATGGGC GTTGCTATATTGATTTCAATCAAAATTATAATCAAAGCTACAATGAAAAC TATTGCCAACTTCTTTGAATCTCCAGAAATTTCAAATAAGAAGACAACAG AGAGAGGAGCAAACCAAATGTTTACACTTCCCTATATTTTTACTTGCTAT GGTGCCATTGGGTATGCTGCAGCTTATATTGCACCTAAAGCTTTTGAATT CGTTGGActtattcattaaaaaaatgactGGATAGAATTTTCATTCTGTA GTGATTTCAGTTTGAATTTACGACCTGATAGTATAATTAGTATAATATTG TCGATTTTAATACAAAATCAAGGACAGTTCGTTATGacatctttttttca aaattgggaGTTTTTTCTTCGCATTATTCTTTTCTGTATTTCtagaaatt ttaatttacatCTTACAGTAGAGCCGTAAATAGCAAGGAACTCTTTATTT TTATACCATGATAAGTTATTCTTTAAATGCACCTCTTAGGTTGGAAAACA CTGTAAATAGACTTTATTTTAAGCAATAATAAATAATACTTTTTCATGGA AATGTATTTTGATGATACAAGTGAGCTCCGTTTTGTTGGTACTTTTGTGT CAATTTCATTTATGCCTCCTCTTAAGGCTGCTGGCATTCACTAACGgttt cgtgctccttatagtaTATAccacctggggttttgtagagg

Coding sequence (CDS) from alignment at scaffold_182:113207..117197+

>TCONS_00050657 ID=TCONS_00050657|Name=TCONS_00050657|organism=Clytia hemisphaerica|type=CDS|length=3663bp|location=Sequence derived from alignment at scaffold_182:113207..117197+ (Clytia hemisphaerica)
ATGTTGAGGTTTCTTGGGAAAGTGGAGAATGTAGTACGTTTCCAAAAGTT
CTGTGGACTTTCTTGGGATGAGAATGCTGCATCTGGTGTGGATTGGAAGC
AGAAAAAGGAATCAAAAGATTCAAAACGATTTTCTTCGACAAGTAGTGAC
GAAGGGAAGGATAGTGCATACAATAGCCATAATTCTTCAGAAGATAGCTC
TTCTGACCACGAGTTACCAACAGATTTTAAGAACACACAACCTGTTAAAT
ACACATACAATTCATTTCTTCATAACATTTTCTTCTTTGGAGCTGAGCTt
ggaaatgaaatattttatatcaCTTTTCTACCGTTTGTTTATTGGAATGT
TGATGACTACATAGCAAGACGTCTTATCATGCTATGGGTATTTAATATGT
ATGCTGGCCAAGGTTTGAAAGATGTCTTGTGCTGGCCTAGACCACGCTCA
CCACCTGTTTTACGATTAGAAACAAATTATGCGGCAGAATATGGAATGCC
ATCAACACACGCTATTGCTGGCTCCATTATACCCTTTGGTTTAGTCTATT
TTAGTTATGGAAGGTTTGAGTATCCATTGTTATTtggtttgttgtttttt
gttgcaTGGACAAGTTTGGTTTGTTTGAGCAGGATTTACCTTGGCATGCA
TACCTTTCAGGACATTGTTGCTGGACTTTCAATGGCGGCATTTGTAACAG
CCTTGTGGCTTCCGTATCTTGATGGCACACTTGAAATCTTTCTCTCGTCT
GCAAATGCATGGATTTTTATAATGCTTGTTCCCATTTTGATGATTTATGC
TTTCCCTACAAAATCTATGGTCACACGAAACGATACTGCTACAATTATTG
CTGTTGGTTGTGGATGTATGTTAGCTTCGTGGAATGAATACTATATAGAT
CAAATACCGTTACCAAACCCTTATGGAGAACCTGTCAAACTAATGTTTGG
TACAGGATTTATCGCTTGGATCTTGTTCAGTGCAACACGTTTTATAATGG
GCGTTGCTATATTGATTTCAATCAAAATTATAATCAAAGCTACAATGAAA
ACTATTGCCAACTTCTTTGAATCTCCAGAAATTTCAAATAAGAAGACAAC
AGAGAGAGGAGCAAACCAAATGTTTACACTTCCCTATATTTTTACTTGCT
ATGGTGCCATTGGGTATGCTGCAGCTTATATTGCACCTAAAGCTTTTGAA
TTCGTTGGActtattcattaaATGTTGAGGTTTCTTGGGAAAGTGGAGAA
TGTAGTACGTTTCCAAAAGTTCTGTGGACTTTCTTGGGATGAGAATGCTG
CATCTGGTGTGGATTGGAAGCAGAAAAAGGAATCAAAAGATTCAAAACGA
TTTTCTTCGACAAGTAGTGACGAAGGGAAGGATAGTGCATACAATAGCCA
TAATTCTTCAGAAGATAGCTCTTCTGACCACGAGTTACCAACAGATTTTA
AGAACACACAACCTGTTAAATACACATACAATTCATTTCTTCATAACATT
TTCTTCTTTGGAGCTGAGCTtggaaatgaaatattttatatcaCTTTTCT
ACCGTTTGTTTATTGGAATGTTGATGACTACATAGCAAGACGTCTTATCA
TGCTATGGGTATTTAATATGTATGCTGGCCAAGGTTTGAAAGATGTCTTG
TGCTGGCCTAGACCACGCTCACCACCTGTTTTACGATTAGAAACAAATTA
TGCGGCAGAATATGGAATGCCATCAACACACGCTATTGCTGGCTCCATTA
TACCCTTTGGTTTAGTCTATTTTAGTTATGGAAGGTTTGAGTATCCATTG
TTATTtggtttgttgttttttgttgcaTGGACAAGTTTGGTTTGTTTGAG
CAGGATTTACCTTGGCATGCATACCTTTCAGGACATTGTTGCTGGACTTT
CAATGGCGGCATTTGTAACAGCCTTGTGGCTTCCGTATCTTGATGGCACA
CTTGAAATCTTTCTCTCGTCTGCAAATGCATGGATTTTTATAATGCTTGT
TCCCATTTTGATGATTTATGCTTTCCCTACAAAATCTATGGTCACACGAA
ACGATACTGCTACAATTATTGCTGTTGGTTGTGGATGTATGTTAGCTTCG
TGGAATGAATACTATATAGATCAAATACCGTTACCAAACCCTTATGGAGA
ACCTGTCAAACTAATGTTTGGTACAGGATTTATCGCTTGGATCTTGTTCA
GTGCAACACGTTTTATAATGGGCGTTGCTATATTGATTTCAATCAAAATT
ATAATCAAAGCTACAATGAAAACTATTGCCAACTTCTTTGAATCTCCAGA
AATTTCAAATAAGAAGACAACAGAGAGAGGAGCAAACCAAATGTTTACAC
TTCCCTATATTTTTACTTGCTATGGTGCCATTGGGTATGCTGCAGCTTAT
ATTGCACCTAAAGCTTTTGAATTCGTTGGActtattcattaaATGTTGAG
GTTTCTTGGGAAAGTGGAGAATGTAGTACGTTTCCAAAAGTTCTGTGGAC
TTTCTTGGGATGAGAATGCTGCATCTGGTGTGGATTGGAAGCAGAAAAAG
GAATCAAAAGATTCAAAACGATTTTCTTCGACAAGTAGTGACGAAGGGAA
GGATAGTGCATACAATAGCCATAATTCTTCAGAAGATAGCTCTTCTGACC
ACGAGTTACCAACAGATTTTAAGAACACACAACCTGTTAAATACACATAC
AATTCATTTCTTCATAACATTTTCTTCTTTGGAGCTGAGCTtggaaatga
aatattttatatcaCTTTTCTACCGTTTGTTTATTGGAATGTTGATGACT
ACATAGCAAGACGTCTTATCATGCTATGGGTATTTAATATGTATGCTGGC
CAAGGTTTGAAAGATGTCTTGTGCTGGCCTAGACCACGCTCACCACCTGT
TTTACGATTAGAAACAAATTATGCGGCAGAATATGGAATGCCATCAACAC
ACGCTATTGCTGGCTCCATTATACCCTTTGGTTTAGTCTATTTTAGTTAT
GGAAGGTTTGAGTATCCATTGTTATTtggtttgttgttttttgttgcaTG
GACAAGTTTGGTTTGTTTGAGCAGGATTTACCTTGGCATGCATACCTTTC
AGGACATTGTTGCTGGACTTTCAATGGCGGCATTTGTAACAGCCTTGTGG
CTTCCGTATCTTGATGGCACACTTGAAATCTTTCTCTCGTCTGCAAATGC
ATGGATTTTTATAATGCTTGTTCCCATTTTGATGATTTATGCTTTCCCTA
CAAAATCTATGGTCACACGAAACGATACTGCTACAATTATTGCTGTTGGT
TGTGGATGTATGTTAGCTTCGTGGAATGAATACTATATAGATCAAATACC
GTTACCAAACCCTTATGGAGAACCTGTCAAACTAATGTTTGGTACAGGAT
TTATCGCTTGGATCTTGTTCAGTGCAACACGTTTTATAATGGGCGTTGCT
ATATTGATTTCAATCAAAATTATAATCAAAGCTACAATGAAAACTATTGC
CAACTTCTTTGAATCTCCAGAAATTTCAAATAAGAAGACAACAGAGAGAG
GAGCAAACCAAATGTTTACACTTCCCTATATTTTTACTTGCTATGGTGCC
ATTGGGTATGCTGCAGCTTATATTGCACCTAAAGCTTTTGAATTCGTTGG
Acttattcattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032096XLOC_032096Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050657-proteinTCONS_00050657-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050657-exon-scaffold_182-1491911889:113207..113988TCONS_00050657-exon-scaffold_182-1491911889:113207..113988Clytia hemisphaericaexon
TCONS_00050657-exon-scaffold_182-1510915933:113207..113988TCONS_00050657-exon-scaffold_182-1510915933:113207..113988Clytia hemisphaericaexon
TCONS_00050657-exon-scaffold_182-1575043694:113207..113988TCONS_00050657-exon-scaffold_182-1575043694:113207..113988Clytia hemisphaericaexon
TCONS_00050657-exon-scaffold_182-1491911889:115684..115773TCONS_00050657-exon-scaffold_182-1491911889:115684..115773Clytia hemisphaericaexon
TCONS_00050657-exon-scaffold_182-1510915933:115684..115773TCONS_00050657-exon-scaffold_182-1510915933:115684..115773Clytia hemisphaericaexon
TCONS_00050657-exon-scaffold_182-1575043694:115684..115773TCONS_00050657-exon-scaffold_182-1575043694:115684..115773Clytia hemisphaericaexon
TCONS_00050657-exon-scaffold_182-1491911889:116165..117197TCONS_00050657-exon-scaffold_182-1491911889:116165..117197Clytia hemisphaericaexon
TCONS_00050657-exon-scaffold_182-1510915933:116165..117197TCONS_00050657-exon-scaffold_182-1510915933:116165..117197Clytia hemisphaericaexon
TCONS_00050657-exon-scaffold_182-1575043694:116165..117197TCONS_00050657-exon-scaffold_182-1575043694:116165..117197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:113207..117197 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.289 41.3076 26.9061 29.5907 30.2691 20.3969 34.9353 35.2238 28.3276 59.6085 44.7813 43.592 40.568 35.0364 20.0148 22.8556 12.0916 20.8437 34.6894 36.9515 28.8815 32.7917 24.1526 24.226 20.4379 21.1468 100.793 103.835 67.0765 54.9514
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000326P_Acid_Pase_2/haloperoxidase
Blast
BLAST of TCONS_00050657 vs. Swiss-Prot (Human)
Match: SGPP2 (Sphingosine-1-phosphate phosphatase 2 OS=Homo sapiens GN=SGPP2 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 9.053e-57
Identity = 117/316 (37.03%), Postives = 174/316 (55.06%), Query Frame = 3
Query:  210 KMLRFLGKVENVVRFQKFCGL--SWDENA-ASGVDWKQKKEXXXXXXXXXXXXXEGKDSAYXXXXXXXXXXXXXXLPTDFKNTQPVKYTYNSFLHNIFFFGAELGNEIFYITFLPFVYWNVDDYIARRLIMLWVFNMYAGQGLKDVLCWPRPRSPPVLRLETNYAAEYGMPSTHAIAGSIIPFGLVYFSYGRFEYPLLFGLLFFVAWTSLVCLSRIYLGMHTFQDIVAGLSMAAFVTALWLP---YLDGTLEIFLSSANAW--IFIMLVPILMIYAFPTKSMV--TRNDTATIIAVGCGCMLASWNEYYIDQIPLP 1127
            ++LR L   + V RFQ+ CGL  + DE    +G D  ++            ++ +G ++         +       P  +     VK   N F + +F F A LG E+FYITFLPF +WN+D Y++RRLI++WV  MY GQ  KDVL WPRP SPPV++LE    AEYGMPSTHA+A + I F L+  +  R++YP + GL+  V +++LVCLSR+Y GMHT  D++ G+ + A +  L  P   ++D      L SA+    + +++VP  + Y +P       TR DT TI+A G G  +  W  ++   +  P
Sbjct:    3 ELLRSLQDSQLVARFQRRCGLFPAPDEGPRENGADPTERAARVPGVEHLPAANGKGGEAP-------ANGLRRAAAPEAYVQKYVVK---NYFYYYLFQFSAALGQEVFYITFLPFTHWNIDPYLSRRLIIIWVLVMYIGQVAKDVLKWPRPSSPPVVKLEKRLIAEYGMPSTHAMAATAIAFTLLISTMDRYQYPFVLGLVMAVVFSTLVCLSRLYTGMHTVLDVLGGVLITALLIVLTYPAWTFIDC-----LDSASPLFPVCVIVVPFFLCYNYPVSDYYSPTRADTTTILAAGAGVTIGFWINHFFQLVSKP 303          
The following BLAST results are available for this feature:
BLAST of TCONS_00050657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SGPP29.053e-5737.03Sphingosine-1-phosphate phosphatase 2 OS=Homo sapi... [more]
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