TCONS_00050580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050580
Unique NameTCONS_00050580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050580 ID=TCONS_00050580|Name=TCONS_00050580|organism=Clytia hemisphaerica|type=transcript|length=406bp
AATTCTTTTCGCCGTCGTACCGCGAACATGATGTAATGAACTTCCTTCAT
ACCCAATAGAATTACATGATTTTTCTTCCCTGTACCTGATTCAATCAACT
AAACATCCACGTGTGTCGAATCAGCTGATTTTTGATTATTGGCAGCCGTG
CATTTTGCATTTTTATCTGGTCCCAAAATGTGTTCTTTCCAGACATTCAT
TTGTCGTCTCGCCTTTCTATTCACCACAAGAAAGGAGATGGCGTCAATGC
CTGAATTAAGGAAAACCCAGATCAGTGACATAATATGCCAAAATATGAGT
GTCGTATTGGATGAATTGATAAAGGCTTGGATCATATCTATCAACAGATA
CGGTGGATAGAATGTAATGACCAGCACCAGATAGATGGAAGCTAACTTGC
TGATTG
Run BLAST on NCBI

protein sequence of TCONS_00050580-protein

>TCONS_00050580-protein ID=TCONS_00050580-protein|Name=TCONS_00050580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
ISKLASIYLVLVITFYPPYLLIDMIQAFINSSNTTLIFWHIMSLIWVFLN
SGIDAISFLVVNRKARRQMNVWKEHILGPDKNAKCTAANNQKSADSTHVD
V
Run BLAST on NCBI

transcript from alignment at scaffold_179:208426..208831

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050580 ID=TCONS_00050580|Name=TCONS_00050580|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at scaffold_179:208426..208831 (Clytia hemisphaerica)
CAATCAGCAAGTTAGCTTCCATCTATCTGGTGCTGGTCATTACATTCTAT
CCACCGTATCTGTTGATAGATATGATCCAAGCCTTTATCAATTCATCCAA
TACGACACTCATATTTTGGCATATTATGTCACTGATCTGGGTTTTCCTTA
ATTCAGGCATTGACGCCATCTCCTTTCTTGTGGTGAATAGAAAGGCGAGA
CGACAAATGAATGTCTGGAAAGAACACATTTTGGGACCAGATAAAAATGC
AAAATGCACGGCTGCCAATAATCAAAAATCAGCTGATTCGACACACGTGG
ATGTTTAGTTGATTGAATCAGGTACAGGGAAGAAAAATCATGTAATTCTA
TTGGGTATGAAGGAAGTTCATTACATCATGTTCGCGGTACGACGGCGAAA
AGAATT

Coding sequence (CDS) from alignment at scaffold_179:208426..208831

>TCONS_00050580 ID=TCONS_00050580|Name=TCONS_00050580|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_179:208426..208831 (Clytia hemisphaerica)
ATCAGCAAGTTAGCTTCCATCTATCTGGTGCTGGTCATTACATTCTATCC
ACCGTATCTGTTGATAGATATGATCCAAGCCTTTATCAATTCATCCAATA
CGACACTCATATTTTGGCATATTATGTCACTGATCTGGGTTTTCCTTAAT
TCAGGCATTGACGCCATCTCCTTTCTTGTGGTGAATAGAAAGGCGAGACG
ACAAATGAATGTCTGGAAAGAACACATTTTGGGACCAGATAAAAATGCAA
AATGCACGGCTGCCAATAATCAAAAATCAGCTGATTCGACACACGTGGAT
GTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032034XLOC_032034Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050580-proteinTCONS_00050580-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050580-exon-scaffold_179-1491911889:208426..208831TCONS_00050580-exon-scaffold_179-1491911889:208426..208831Clytia hemisphaericaexon
TCONS_00050580-exon-scaffold_179-1510915933:208426..208831TCONS_00050580-exon-scaffold_179-1510915933:208426..208831Clytia hemisphaericaexon
TCONS_00050580-exon-scaffold_179-1575043694:208426..208831TCONS_00050580-exon-scaffold_179-1575043694:208426..208831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:208426..208831 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36018	0.175616	0.203907	0.199491	0.242862	0	19.9119	17.5575	12.7477	15.4141	8.39295	12.5936	1.91636	1.36823	0	0	0	0.138568	2.48872	6.00984	0.696485	0.764372	0.412975	0.375455	0.966774	0.862822	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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