TCONS_00050577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050577
Unique NameTCONS_00050577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050577 ID=TCONS_00050577|Name=TCONS_00050577|organism=Clytia hemisphaerica|type=transcript|length=468bp
CAGCGTGCTTCGTACAAAACTGTTCAGAATTTTATACGCGTTTTAAGATT
TATCCTTATGTCATATTTTGGAGCAAGTTGCCCATATCAGTGAATTTACT
GATCGCTAACTGTATTCGATGGTTGATCTGTGGATCTCCTGTGTTAGGTT
GATCGAAAGATATATGTGCCAAGATAGATAAAATTCTCAATATTTTTGAT
AACAGTGTTCCTTAAGTTGAGAATTGACTTTGGGTATTCACCTTCCGATT
GGTTTAAGATCATGGATTCAGTTTTTTGCGTGTTTATGTTCAGTCCGAAT
TTCGTGAATGTTTCGTTCAAGAGATTCGCCGATTTTCGAAGATCAGATTC
AGTGAGAAGGAATAGAATGAGATCGTCTGCAGGGTAGTGACTTAGTACCA
AATGTGGGTTGATTATTCTGTCTCATTTCCATTCTTTCAACtacatttta
tcaaaatttcgaggcagc
Run BLAST on NCBI

transcript from alignment at scaffold_179:180645..181112

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050577 ID=TCONS_00050577|Name=TCONS_00050577|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at scaffold_179:180645..181112 (Clytia hemisphaerica)
gctgcctcgaaattttgataaaatgtaGTTGAAAGAATGGAAATGAGACA
GAATAATCAACCCACATTTGGTACTAAGTCACTACCCTGCAGACGATCTC
ATTCTATTCCTTCTCACTGAATCTGATCTTCGAAAATCGGCGAATCTCTT
GAACGAAACATTCACGAAATTCGGACTGAACATAAACACGCAAAAAACTG
AATCCATGATCTTAAACCAATCGGAAGGTGAATACCCAAAGTCAATTCTC
AACTTAAGGAACACTGTTATCAAAAATATTGAGAATTTTATCTATCTTGG
CACATATATCTTTCGATCAACCTAACACAGGAGATCCACAGATCAACCAT
CGAATACAGTTAGCGATCAGTAAATTCACTGATATGGGCAACTTGCTCCA
AAATATGACATAAGGATAAATCTTAAAACGCGTATAAAATTCTGAACAGT
TTTGTACGAAGCACGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032031XLOC_032031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050577-exon-scaffold_179-1491911889:180645..181112TCONS_00050577-exon-scaffold_179-1491911889:180645..181112Clytia hemisphaericaexon
TCONS_00050577-exon-scaffold_179-1510915933:180645..181112TCONS_00050577-exon-scaffold_179-1510915933:180645..181112Clytia hemisphaericaexon
TCONS_00050577-exon-scaffold_179-1575043694:180645..181112TCONS_00050577-exon-scaffold_179-1575043694:180645..181112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:180645..181112 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.539688	0.468043	0.549883	0.45521	0.184725	0	0	0.494613	0.923441	1.71575	1.38779	0.912277	0.0911009	0	0	0	0	0	0	0.152373	0	0.321968	0.157058	0.285577	0.329264	0.787534	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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