TCONS_00050483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050483
Unique NameTCONS_00050483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050483 ID=TCONS_00050483|Name=TCONS_00050483|organism=Clytia hemisphaerica|type=transcript|length=255bp
CTAGCTTGTCTTTTTTTCCCTCACAAAAAAACCTAGGTCAATGTAATTGA
ATATTGAGATAAACAGTAAAAGTAGAcccttttaaaaattgaaaaaaaaa
attatttggtgtCTATCCCGTAGACAAGAAAAATGGTgcgaaaataaaaa
tctaaaacaaataaataagaatTAGTGTTGTTCGGGAGGAGGAAACTCAG
TGATAAAATCTCAAATTCGTCACTCTGAAAACTCCTTAAAATGAGAATAT
TTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_173:32176..32430

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050483 ID=TCONS_00050483|Name=TCONS_00050483|organism=Clytia hemisphaerica|type=transcript|length=255bp|location=Sequence derived from alignment at scaffold_173:32176..32430 (Clytia hemisphaerica)
CAAAAATATTCTCATTTTAAGGAGTTTTCAGAGTGACGAATTTGAGATTT
TATCACTGAGTTTCCTCCTCCCGAACAACACTAattcttatttatttgtt
ttagatttttattttcgcACCATTTTTCTTGTCTACGGGATAGacaccaa
ataattttttttttcaatttttaaaagggTCTACTTTTACTGTTTATCTC
AATATTCAATTACATTGACCTAGGTTTTTTTGTGAGGGAAAAAAAGACAA
GCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031968XLOC_031968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050483-exon-scaffold_173-1491911889:32176..32430TCONS_00050483-exon-scaffold_173-1491911889:32176..32430Clytia hemisphaericaexon
TCONS_00050483-exon-scaffold_173-1510915933:32176..32430TCONS_00050483-exon-scaffold_173-1510915933:32176..32430Clytia hemisphaericaexon
TCONS_00050483-exon-scaffold_173-1575043694:32176..32430TCONS_00050483-exon-scaffold_173-1575043694:32176..32430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_173supercontigscaffold_173:32176..32430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41767	2.7649	1.60516	0.785198	12.4267	6.04294	14.5811	26.4481	16.725	19.9767	10.7722	15.5786	14.1427	19.0936	12.4775	13.8222	21.2848	22.3616	9.04209	13.4043	74.7022	64.1829	42.2623	34.7281	10.6546	12.2259	116.634	77.7971	36.1906	29.6583
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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