|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050472 ID=TCONS_00050472|Name=TCONS_00050472|organism=Clytia hemisphaerica|type=transcript|length=1944bpRun BLAST on NCBI transcript from alignment at scaffold_173:6307..32102+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050472 ID=TCONS_00050472|Name=TCONS_00050472|organism=Clytia hemisphaerica|type=transcript|length=25796bp|location=Sequence derived from alignment at scaffold_173:6307..32102+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050472 vs. Swiss-Prot (Human)
Match: KAPCA (cAMP-dependent protein kinase catalytic subunit alpha OS=Homo sapiens GN=PRKACA PE=1 SV=2) HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0 Identity = 272/336 (80.95%), Postives = 308/336 (91.67%), Query Frame = 2
Query: 383 LKGFLNQCQTDFKAKWEIPAKNTASLEEFDRLKTLGTGSFGRVMLCCHRESKKYYAMKILDKQKVVRLKQVEHTLNEKRILQAVDFPFLVNLDFHFKDNSNLYMVLEFVPGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHHLDLIYRDLKPENLLIDQQGYIKITDFGFAKKVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKMRCPSHFSQDLKEILKSLLQVDLTKRFGNLKNGVADIKNHRWFSSIDLIAVYQRTVEAPFVPRCKGPGDPSNFDDYEEEALRISSTEKCAKEFADF 1390
+K FL + + DF KWE PA+NTA L++F+R+KTLGTGSFGRVML H+E+ +YAMKILDKQKVV+LKQ+EHTLNEKRILQAV+FPFLV L+F FKDNSNLYMV+E+VPGGEMFSHLRRIGRFSEPH+RFYAAQIVL FEYLH LDLIYRDLKPENLLIDQQGYI++TDFGFAK+VKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK+R PSHFS DLK++L++LLQVDLTKRFGNLKNGV DIKNH+WF++ D IA+YQR VEAPF+P+ KGPGD SNFDDYEEE +R+S EKC KEF++F
Sbjct: 16 VKEFLAKAKEDFLKKWESPAQNTAHLDQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFSEF 351 The following BLAST results are available for this feature:
BLAST of TCONS_00050472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.