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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050441 ID=TCONS_00050441|Name=TCONS_00050441|organism=Clytia hemisphaerica|type=transcript|length=1742bp
ACCaccatcaatctttgataatatACCGTCCAGTTCCATTCCAACACCTC
TTCCACCTCCAAGACCAACAAAACGCACGTCTTTCGAAACCAGCAGCCAG
CAGGAGGATGAGATGGAAGAGTTTAGAAATCGCGACAAACTAAAATTTGA
GGACATCGCCAACTCCAATCGATTGACATTACTCGGTTTGCCTATCGTCG
CATTTCAAGTCAATGGTGAACAGTGGATTCAATCTGGTGAATATATATCA
GGAATACCATCATTTTCGCTGAAAATATCGAAAGATTTGAGATTCATTGC
GTACAAAATGGGTGTTCAATGTACCATAAAATCCCTTTCGAAAAATCGTA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA
AAATATCGAAAGATTTGAGATTCATTGCGTACAAAATGGGTGTTCAATGT
ACCATAAAATCCCTTTCGAAAAATCGTATCACTCATCTCGATTCATGGTC
GTGTCTTGAGGAAGCACTTTGCTTTTTGGAAAATAGTGAATTCACTCGGC
ATCAAAccattttacaagaacaaatagAATCTATGAAACCACCTCAAGTC
GGAAAAAAAACTCTATTCTCCGCAAGTACTGATGCGAGCATTCGGCTACT
TTTCTCAATCTCGTTCACTCTACTCAAGGCTCCGATCCGATTTCAAACTC
CCCTCAATCAAGACGCTAACCAACATCTCGTCCAAAGTCAACAACACATC
CGACAGGACATTTATCAACGAAATCATCAAAGCTGTAAAACCTGACCAGA
GAAAGTGTATAGTCATGGCAGACGAAGTTTATGTAAAACAGTGCCTGCTC
TATCATGGCGGAACCGTCTTTGGTCAGGCAGAAAACAACCCATCCAGTTT
AGCAACTTCCGTACTCGGAATTATGGTGAAATGCTTATTCGGTGGTCCAa
cgtttttattcaaaatgattccagtgaaagctatgactgcTGCTTTTTTT
TCGATCAAATTCAGCAAACTATTGCTCTGTTGCGTGGCGCTGGTGCcgaa
atcaaatcaataatcgTCGATGGAAATCGAACGAACCAGAATTTCTTCAA
GCAGTTTGATACGGTCACAGACAAACCCTGGTTGACAATTGATGGTATTT
TCCTTCTGTTCGATTTTGTTCACCTGATTAAAAGTATTCGAAATAATTGG
TTAACAGAGAAGACTGGCCAACTCACATTCAAAGAAGATGATGATACATT
CATTGCCAAGTGGTCTGACCTTATCCGATTACACGAAGTTGAAAACATGT
CAAACTTCTGCGGAGTTCGTGGCTtatcaaagtttgaaaattccGACTGA
TACGATTTGTCAAAGGACGATGTTTTCATACATAATGTTCAATTATATCC
GACATCTCGTCTGCCGAACATCACTGTCTGATGTCTTGATGTCTATCGCT
CACTCATACGCTTTTGACTCTATCACTAAAAATAATGCTATGATATTATC
GAACATCTTTCTGAACAATTTCTGCAAATCGCAGACGCCTCGCTCCTCGA
AGGAGGCGAGCCAGAAAGTTCtaaagctaaaagaaaaatgaaacatcttT
TTCTATCATCACACTCTGAGTGCATCNAGCCAGAAAAATGtaaagctaaa
agaaaaatgaaacatcttTTTCTATCATCACACTCTGAGTGCATCCAGTT
CTTTCAATTTTCTatagtttatttttttaaataaagtgttCA Run BLAST on NCBI protein sequence of TCONS_00050441-protein >TCONS_00050441-protein ID=TCONS_00050441-protein|Name=TCONS_00050441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MYHKIPFEKSYXXXXXXXXXXXXXXXXKISKDLRFIAYKMGVQCTIKSLS
KNRITHLDSWSCLEEALCFLENSEFTRHQTILQEQIESMKPPQVGKKTLF
SASTDASIRLLFSISFTLLKAPIRFQTPLNQDANQHLVQSQQHIRQDIYQ
RNHQSCKT Run BLAST on NCBI transcript from alignment at scaffold_171:148461..150202 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050441 ID=TCONS_00050441|Name=TCONS_00050441|organism=Clytia hemisphaerica|type=transcript|length=1742bp|location=Sequence derived from alignment at scaffold_171:148461..150202 (Clytia hemisphaerica)
TGaacactttatttaaaaaaataaactatAGAAAATTGAAAGAACTGGAT
GCACTCAGAGTGTGATGATAGAAAaagatgtttcatttttcttttagctt
taCATTTTTCTGGCTNGATGCACTCAGAGTGTGATGATAGAAAaagatgt
ttcatttttcttttagctttaGAACTTTCTGGCTCGCCTCCTTCGAGGAG
CGAGGCGTCTGCGATTTGCAGAAATTGTTCAGAAAGATGTTCGATAATAT
CATAGCATTATTTTTAGTGATAGAGTCAAAAGCGTATGAGTGAGCGATAG
ACATCAAGACATCAGACAGTGATGTTCGGCAGACGAGATGTCGGATATAA
TTGAACATTATGTATGAAAACATCGTCCTTTGACAAATCGTATCAGTCgg
aattttcaaactttgataAGCCACGAACTCCGCAGAAGTTTGACATGTTT
TCAACTTCGTGTAATCGGATAAGGTCAGACCACTTGGCAATGAATGTATC
ATCATCTTCTTTGAATGTGAGTTGGCCAGTCTTCTCTGTTAACCAATTAT
TTCGAATACTTTTAATCAGGTGAACAAAATCGAACAGAAGGAAAATACCA
TCAATTGTCAACCAGGGTTTGTCTGTGACCGTATCAAACTGCTTGAAGAA
ATTCTGGTTCGTTCGATTTCCATCGAcgattattgatttgatttcgGCAC
CAGCGCCACGCAACAGAGCAATAGTTTGCTGAATTTGATCGAAAAAAAAG
CAgcagtcatagctttcactggaatcattttgaataaaaacgtTGGACCA
CCGAATAAGCATTTCACCATAATTCCGAGTACGGAAGTTGCTAAACTGGA
TGGGTTGTTTTCTGCCTGACCAAAGACGGTTCCGCCATGATAGAGCAGGC
ACTGTTTTACATAAACTTCGTCTGCCATGACTATACACTTTCTCTGGTCA
GGTTTTACAGCTTTGATGATTTCGTTGATAAATGTCCTGTCGGATGTGTT
GTTGACTTTGGACGAGATGTTGGTTAGCGTCTTGATTGAGGGGAGTTTGA
AATCGGATCGGAGCCTTGAGTAGAGTGAACGAGATTGAGAAAAGTAGCCG
AATGCTCGCATCAGTACTTGCGGAGAATAGAGTTTTTTTTCCGACTTGAG
GTGGTTTCATAGATTctatttgttcttgtaaaatggTTTGATGCCGAGTG
AATTCACTATTTTCCAAAAAGCAAAGTGCTTCCTCAAGACACGACCATGA
ATCGAGATGAGTGATACGATTTTTCGAAAGGGATTTTATGGTACATTGAA
CACCCATTTTGTACGCAATGAATCTCAAATCTTTCGATATTTTCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGATTT
TTCGAAAGGGATTTTATGGTACATTGAACACCCATTTTGTACGCAATGAA
TCTCAAATCTTTCGATATTTTCAGCGAAAATGATGGTATTCCTGATATAT
ATTCACCAGATTGAATCCACTGTTCACCATTGACTTGAAATGCGACGATA
GGCAAACCGAGTAATGTCAATCGATTGGAGTTGGCGATGTCCTCAAATTT
TAGTTTGTCGCGATTTCTAAACTCTTCCATCTCATCCTCCTGCTGGCTGC
TGGTTTCGAAAGACGTGCGTTTTGTTGGTCTTGGAGGTGGAAGAGGTGTT
GGAATGGAACTGGACGGTatattatcaaagattgatggtGGT Coding sequence (CDS) from alignment at scaffold_171:148461..150202 >TCONS_00050441 ID=TCONS_00050441|Name=TCONS_00050441|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_171:148461..150202 (Clytia hemisphaerica)
TCAGGTTTTACAGCTTTGATGATTTCGTTGATAAATGTCCTGTCGGATGT
GTTGTTGACTTTGGACGAGATGTTGGTTAGCGTCTTGATTGAGGGGAGTT
TGAAATCGGATCGGAGCCTTGAGTAGAGTGAACGAGATTGAGAAAAGTAG
CCGAATGCTCGCATCAGTACTTGCGGAGAATAGAGTTTTTTTTCCGACTT
GAGGTGGTTTCATAGATTctatttgttcttgtaaaatggTTTGATGCCGA
GTGAATTCACTATTTTCCAAAAAGCAAAGTGCTTCCTCAAGACACGACCA
TGAATCGAGATGAGTGATACGATTTTTCGAAAGGGATTTTATGGTACATT
GAACACCCATTTTGTACGCAATGAATCTCAAATCTTTCGATATTTTCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGA
TTTTTCGAAAGGGATTTTATGGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050441-exon-scaffold_171-1491911889:148461..150202 | TCONS_00050441-exon-scaffold_171-1491911889:148461..150202 | Clytia hemisphaerica | exon |
| TCONS_00050441-exon-scaffold_171-1510915933:148461..150202 | TCONS_00050441-exon-scaffold_171-1510915933:148461..150202 | Clytia hemisphaerica | exon |
| TCONS_00050441-exon-scaffold_171-1575043694:148461..150202 | TCONS_00050441-exon-scaffold_171-1575043694:148461..150202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:148461..150202 . |
Blast
The following BLAST results are available for this feature:
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