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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050395 ID=TCONS_00050395|Name=TCONS_00050395|organism=Clytia hemisphaerica|type=transcript|length=2628bp
acattagaccaagttacgatactgtgagtggtcctaaatccgacagccct
gcctaaatccaacCCCCCAAATAAAcagctatgaaaaaaaattctatgtt
tacaaacattccctctccaagttgaacaataaactatattgcaagaactc
tcgaaacaaaacatctaacaagatgactaaaatgtcaagatgtcaatgtG
ACaaaaaaagtgcgagttgtaaaaataattacctctattattctggatca
gttgctcgtGTTtgaaacgttaacaattttgtaataaaaaattatgtttt
gtataagaagcaattaatgtttttGTTCAATAGGtgcagtgtatcaaatc
tctcagtttagttgacactttggtatcttcattgcgtcacagcaaaatgt
ttgtttttattttagtttgtatctttgaaagaccccatcagatttaggca
gggctgtcggatttaagACCACTCACGGTAATTGTTGCATTTTTATGCCT
TAAAAAGTGTCATTGAATTCATAGAATGCCAGTTTTAATCaaattcaaga
agtatttctcaCGTCacttttaagccatttttggtGAAAATCCTGAAATT
TTGATCATCCAActtgcaaaagtttatgctcatgtcgaaatttcaaactt
atttttcaaattcaaaacctATATATATGCCACCATTTGAAAGCCCTTAT
CATAAGagaaaaaatgaggggtcatttacctggcaaaaagttttagtttt
tgagataTATAAATTTGAAGTTCCAATTTTACAGCTCCTTCGGTAACAAG
GCTCCCCAgctaaatttcgattttttggcACTCAGTTATGATTTTGCTCA
ACCAAATCTCGGCAAGGGTTTTACCTTGCGCGGCCTTGACAATCAGTCAA
CCAGCTTCAAACTTTTGTTTACTACGAATGAAGTGAAAAAGGTATTGAAA
AACAGTTTTCACatttgaaagaagaagcttTTGGCTTTCAAAAACATCCA
CACGTTTAGTTATAAcctttaaagtttcaaaaaaaaatctcatttgacCT
GAATCTAAAGGAAAACCCGAGCAAAGCGTTGATTAGGAAAAGCAGGAATC
ATGTGGCGAAAGCATGGTGAAAAATTATGCCGGTAGACGAAAGACCTCAT
TTTTggcatccttctttagagagaggaataataggaaggttggaatCACT
GATGGACTCCTCAACTGATTGTTTAGCAAAAAGAATAAGTTTCAATCAGT
AATTCTGATCTTCCTACCATTcatatctttaaagaaggattttgaaatta
gaagagggatgtcgacattagacaaaCCTACAGTAGTTTCTATGGTAAGA
TATTTAACCCCAAACTTTGTTTTACTAAAATTGTGAATTTGTTACCGTGT
GAGGCGCAACCCTTTGGTCGGCCTACTCATGGTAAATTTCCTTGAATTCA
CAAAAGTAAATGTCataaatttcatgaatttttgacctcacaaaagtttc
tgctcgcaaaagtttgtacgcctaaagttcCAAAAAATGTCAAGCAGGGA
AAAGGTAGCAAATGAGAAGGAaattatttcttaattttcagGTTGAGAAT
AAAACTTTTCCACATTTTGAAAGTGCAAGAAATAGAATTTCAAAGAGTTT
GTACATTTAAAAGCAGGGAGGAAATTTTCAAGTTGACAACGAAAGTTTTT
CTACATTTTAaatacaaatataaaaaaattacggTTGACCATTAAAACGT
TTTTAATAATATTtagaaaagaatataaaaaattctaagttGATGACAAA
TGTTTGCTACATTACAAAAACACATAGGTATGTGGAAATCAATTCAAGTG
GACGACAGGCATTCAATATACTTGAAAAGCATGTGAGGAAAGAAACTTTC
AAGTTGGTGACAATAAaagtttccacattttaaacgtaCTTAGAAGATGA
TATGCAGTTCACAATTATTTACCACATTTCATAAGCATAGGGAAATAAAT
TTTCCTAGTGGGTGATAaaatttttccatattttataATGCCATATATAt
taagtgtattaattttggtgttagtgcagtctaaatgtgccaaaagtcat
taacatgagactttgcacaattgtagtttaggggtcaaaaatggatttaa
atctcagacccaaaaaaaTGGCAccttttgtgtattttacagaccagaat
aggttCCCAggctaaaattaattttttttgttccaaagtatgtcatgtta
catacTGTTGGAAAGAATTTTTCATCCTTGTTTAGAAAaacccatatctg
aaaatgaagccaaaaaaagttattgcaGAACGTTGTTTGcaaaattatat
attattaGGGTTAGTAATAATAgtgataaatttaatttttgtgggtattt
aatttggcgaatggcaGATTTTGTATTATTTGGCAGATGGGGAAATTTGT
AAATCAAAAGATATTTGGTGTTACttgatttttgttaaatttgggaGGTA
TTTAATTCTGTTTAATTTGGTAGGTagtcaatttcaaaatttttggctGG
TAAtcaatttggcggattttaCAAATCTCCCAAATTTAGTACGCCAAAAT
TAATATAATACACTTGAGGCAgccattg Run BLAST on NCBI transcript from alignment at scaffold_17:97304..99931- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050395 ID=TCONS_00050395|Name=TCONS_00050395|organism=Clytia hemisphaerica|type=transcript|length=2628bp|location=Sequence derived from alignment at scaffold_17:97304..99931- (Clytia hemisphaerica)
ACATTAGACCAAGTTACGATACTGTGAGTGGTCCTAAATCCGACAGCCCT
GCCTAAATCCAACCCCCCAAATAAACAGCTATGAAAAAAAATTCTATGTT
TACAAACATTCCCTCTCCAAGTTGAACAATAAACTATATTGCAAGAACTC
TCGAAACAAAACATCTAACAAGATGACTAAAATGTCAAGATGTCAATGTG
ACAAAAAAAGTGCGAGTTGTAAAAATAATTACCTCTATTATTCTGGATCA
GTTGCTCGTGTTTGAAACGTTAACAATTTTGTAATAAAAAATTATGTTTT
GTATAAGAAGCAATTAATGTTTTTGTTCAATAGGTGCAGTGTATCAAATC
TCTCAGTTTAGTTGACACTTTGGTATCTTCATTGCGTCACAGCAAAATGT
TTGTTTTTATTTTAGTTTGTATCTTTGAAAGACCCCATCAGATTTAGGCA
GGGCTGTCGGATTTAAGACCACTCACGGTAATTGTTGCATTTTTATGCCT
TAAAAAGTGTCATTGAATTCATAGAATGCCAGTTTTAATCAAATTCAAGA
AGTATTTCTCACGTCACTTTTAAGCCATTTTTGGTGAAAATCCTGAAATT
TTGATCATCCAACTTGCAAAAGTTTATGCTCATGTCGAAATTTCAAACTT
ATTTTTCAAATTCAAAACCTATATATATGCCACCATTTGAAAGCCCTTAT
CATAAGAGAAAAAATGAGGGGTCATTTACCTGGCAAAAAGTTTTAGTTTT
TGAGATATATAAATTTGAAGTTCCAATTTTACAGCTCCTTCGGTAACAAG
GCTCCCCAGCTAAATTTCGATTTTTTGGCACTCAGTTATGATTTTGCTCA
ACCAAATCTCGGCAAGGGTTTTACCTTGCGCGGCCTTGACAATCAGTCAA
CCAGCTTCAAACTTTTGTTTACTACGAATGAAGTGAAAAAGGTATTGAAA
AACAGTTTTCACATTTGAAAGAAGAAGCTTTTGGCTTTCAAAAACATCCA
CACGTTTAGTTATAACCTTTAAAGTTTCAAAAAAAAATCTCATTTGACCT
GAATCTAAAGGAAAACCCGAGCAAAGCGTTGATTAGGAAAAGCAGGAATC
ATGTGGCGAAAGCATGGTGAAAAATTATGCCGGTAGACGAAAGACCTCAT
TTTTGGCATCCTTCTTTAGAGAGAGGAATAATAGGAAGGTTGGAATCACT
GATGGACTCCTCAACTGATTGTTTAGCAAAAAGAATAAGTTTCAATCAGT
AATTCTGATCTTCCTACCATTCATATCTTTAAAGAAGGATTTTGAAATTA
GAAGAGGGATGTCGACATTAGACAAACCTACAGTAGTTTCTATGGTAAGA
TATTTAACCCCAAACTTTGTTTTACTAAAATTGTGAATTTGTTACCGTGT
GAGGCGCAACCCTTTGGTCGGCCTACTCATGGTAAATTTCCTTGAATTCA
CAAAAGTAAATGTCATAAATTTCATGAATTTTTGACCTCACAAAAGTTTC
TGCTCGCAAAAGTTTGTACGCCTAAAGTTCCAAAAAATGTCAAGCAGGGA
AAAGGTAGCAAATGAGAAGGAAATTATTTCTTAATTTTCAGGTTGAGAAT
AAAACTTTTCCACATTTTGAAAGTGCAAGAAATAGAATTTCAAAGAGTTT
GTACATTTAAAAGCAGGGAGGAAATTTTCAAGTTGACAACGAAAGTTTTT
CTACATTTTAAATACAAATATAAAAAAATTACGGTTGACCATTAAAACGT
TTTTAATAATATTTAGAAAAGAATATAAAAAATTCTAAGTTGATGACAAA
TGTTTGCTACATTACAAAAACACATAGGTATGTGGAAATCAATTCAAGTG
GACGACAGGCATTCAATATACTTGAAAAGCATGTGAGGAAAGAAACTTTC
AAGTTGGTGACAATAAAAGTTTCCACATTTTAAACGTACTTAGAAGATGA
TATGCAGTTCACAATTATTTACCACATTTCATAAGCATAGGGAAATAAAT
TTTCCTAGTGGGTGATAAAATTTTTCCATATTTTATAATGCCATATATAT
TAAGTGTATTAATTTTGGTGTTAGTGCAGTCTAAATGTGCCAAAAGTCAT
TAACATGAGACTTTGCACAATTGTAGTTTAGGGGTCAAAAATGGATTTAA
ATCTCAGACCCAAAAAAATGGCACCTTTTGTGTATTTTACAGACCAGAAT
AGGTTCCCAGGCTAAAATTAATTTTTTTTGTTCCAAAGTATGTCATGTTA
CATACTGTTGGAAAGAATTTTTCATCCTTGTTTAGAAAAACCCATATCTG
AAAATGAAGCCAAAAAAAGTTATTGCAGAACGTTGTTTGCAAAATTATAT
ATTATTAGGGTTAGTAATAATAGTGATAAATTTAATTTTTGTGGGTATTT
AATTTGGCGAATGGCAGATTTTGTATTATTTGGCAGATGGGGAAATTTGT
AAATCAAAAGATATTTGGTGTTACTTGATTTTTGTTAAATTTGGGAGGTA
TTTAATTCTGTTTAATTTGGTAGGTAGTCAATTTCAAAATTTTTGGCTGG
TAATCAATTTGGCGGATTTTACAAATCTCCCAAATTTAGTACGCCAAAAT
TAATATAATACACTTGAGGCAGCCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050395-exon-scaffold_17-1575043694:97304..99931 | TCONS_00050395-exon-scaffold_17-1575043694:97304..99931 | Clytia hemisphaerica | exon |
| TCONS_00050395-exon-scaffold_17-1510915933:97304..99931 | TCONS_00050395-exon-scaffold_17-1510915933:97304..99931 | Clytia hemisphaerica | exon |
| TCONS_00050395-exon-scaffold_17-1491911889:97304..99931 | TCONS_00050395-exon-scaffold_17-1491911889:97304..99931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:97304..99931 - |
Blast
The following BLAST results are available for this feature:
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