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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004882 ID=TCONS_00004882|Name=TCONS_00004882|organism=Clytia hemisphaerica|type=transcript|length=1323bp
NNTCAACAAAAGAAAGCCAACAGCAGTTCACGTGAATAGATTGAAATCAT
TCAAAGATCCTAACTTCCGAGTGATGGAAGATGAAGATAAAAGTAGTGAC
GAATCCGAGGATATTGAAGGCTCAGAAGACATAGGAGGGGAACCAGAAAA
GGATAAAGACGATTCAAGGGAAAACAGTTCCAATCAAGAGAACCAAAACG
GTGGAACCGAAGAACACGAACAAGGAAACAGTAGTCAAAATCCGGACCAA
GATGGTACAAACGGAAGAATTAGCCAATCTCTCGATCCAAACGATGACGA
GAAAGGAGAACAAGAGGAAGAAAAGATGTATATGGTCGAGAGAAtactga
aaatgaagatgaaaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGAACAAGAGGAAGAAAAGATGTATA
TGGTCGAGAGAAtactgaaaatgaagatgaaaagaagCAAGAGATACTTC
TTAATCAAATGGCAGGATTTTCCCGACGAGGAGAATACATGGGAACCAGA
AGAGCATCTAGACACAATTTTGGTCGAGCAATACCTCGAATCTCAAACGC
AAATGAATGCAATAGCAGTTACAAGGAATCGAATTAGAGGACCGAGACCC
TACATGAGATGGTCAATAATCATGTTATTAGCAATACTGCCCATAGTATT
CGGATCCAGACTAGGTAACCTGTACGACTGCACAGCAACAACACCGATGG
GAGTATACGAATTTCCAACAATTCCAGATTGTACCCATTCAATGAACAAA
GATTCGANAATGCAAGTTCACAGATGTTTGAAGATCTCGAATTACCGGTT
AATAACAAGCCGCAGAATAGGAAATTCGTGCTATCATGACATTCCAGTGC
TAAGGTGCTTTACCTTATCACGAAAAGATAAAATTCTTGCGACTAATTGA
CCGCCACGTAGTTGAAAAGTCCCACAAGATCTATTGCTCTGAAAGACCAC
CAGTCACTTATCTCCGAAACGAGGAAGGATCATACGACGTAATTGACAAG
GAAGGAAACATAACCAAGGTGATCCCAAAGAAACAATTCAAAGGAAGGAA
CTTCGTGAAACTACCTAAGATAAGAGGATGGGATCCGAGGATGATACGAA
AACCACCACAACATTTGGCACCCTACTCTATGCTGAATATATTCTCAGAG
ATACATGACGCAATGGAAGAGGTGAAGCAATTTCAAATGCAACATGGGAA
TGGAGACTTATTAACTGGCATTGGAGTCGGTTTAGGAGGAATCCTTGAAG
GTGCTGCAAGTGGGACTAGTCAN Run BLAST on NCBI protein sequence of TCONS_00004882-protein >TCONS_00004882-protein ID=TCONS_00004882-protein|Name=TCONS_00004882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
XNKRKPTAVHVNRLKSFKDPNFRVMEDEDKSSDESEDIEGSEDIGGEPEK
DKDDSRENSSNQENQNGGTEEHEQGNSSQNPDQDGTNGRISQSLDPNDDE
KGEQEEEKMYMVERILKMKMKRXXXXXXXXXXXXXXXXXXXXTRGRKDVY
GRENTENEDEKKQEILLNQMAGFSRRGEYMGTRRASRHNFGRAIPRISNA
NECNSSYKESN Run BLAST on NCBI transcript from alignment at sc0000049:833633..835031+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004882 ID=TCONS_00004882|Name=TCONS_00004882|organism=Clytia hemisphaerica|type=transcript|length=1399bp|location=Sequence derived from alignment at sc0000049:833633..835031+ (Clytia hemisphaerica)
NNTCAACAAAAGAAAGCCAACAGCAGTTCACGTGAATAGATTGAAATCAT
TCAAAGATCCTAACTTCCGAGTGATGGAAGATGAAGATAAAAGTAGTGAC
GAATCCGAGGATATTGAAGGCTCAGAAGACATAGGAGGGGAACCAGAAAA
GGATAAAGACGATTCAAGGGAAAACAGTTCCAATCAAGAGAACCAAAACG
GTGGAACCGAAGAACACGAACAAGGAAACAGTAGTCAAAATCCGGACCAA
GATGGTACAAACGGAAGAATTAGCCAATCTCTCGATCCAAACGATGACGA
GAAAGGAGAACAAGAGGAAGAAAAGATGTATATGGTCGAGAGAAtactga
aaatgaagatgaaaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGAACAAGAGGAAGAAAAGATGTATA
TGGTCGAGAGAAtactgaaaatgaagatgaaaagaagCAAGAGATACTTC
TTAATCAAATGGCAGGATTTTCCCGACGAGGAGAATACATGGGAACCAGA
AGAGCATCTAGACACAATTTTGGTCGAGCAATACCTCGAATCTCAAACGC
AAATGAATGCAATAGCAGTTACAAGGAATCGAATTAGAGGACCGAGACCC
TACATGAGATGGTCAATAATCATGTTATTAGCAATACTGCCCATAGTATT
CGGATCCAGACTAGGTAACCTGTACGACTGCACAGCAACAACACCGATGG
GAGTATACGAATTTCCAACAATTCCAGATTGTACCCATTCAATGAACAAA
GATTCGANAATGCAAGTTCACAGATGTTTGAAGATCTCGAATTACCGGTT
AATAACAAGCCGCAGAATAGGAAATTCGTGCTATCATGACATTCCAGTGC
TAAGGTGCTTTACCTTATCACGAAAAGATAAAATTCTTGCGACTAATTGA
CCGCCACGTAGTTGAAAAGTCCCACAAGATCTATTGCTCTGAAAGACCAC
CAGTCACTTATCTCCGAAACGAGGAAGGATCATACGACGTAATTGACAAG
GAAGGAAACATAACCAAGGTGATCCCAAAGAAACAATTCAAAGGAAGGAA
CTTCGTGAAACTACCTAAGATAAGAGGATGGGATCCGAGGATGATACGAA
AACCACCACAACATTTGGCACCCTACTCTATGCTGAATATATTCTCAGAN
AGGATGGGATCCGAGGATGGTACGAAAACCACCACAACATTTGGCACCCT
ACTCTATGCTGAATATATTCTCAGAGATACATGACGCAATGGAAGAGGTG
AAGCAATTTCAAATGCAACATGGGAATGGAGACTTATTAACTGGCATTGG
AGTCGGTTTAGGAGGAATCCTTGAAGGTGCTGCAAGTGGGACTAGTCAN Coding sequence (CDS) from alignment at sc0000049:833633..835031+ >TCONS_00004882 ID=TCONS_00004882|Name=TCONS_00004882|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000049:833633..835031+ (Clytia hemisphaerica)
NTCAACAAAAGAAAGCCAACAGCAGTTCACGTGAATAGATTGAAATCATT
CAAAGATCCTAACTTCCGAGTGATGGAAGATGAAGATAAAAGTAGTGACG
AATCCGAGGATATTGAAGGCTCAGAAGACATAGGAGGGGAACCAGAAAAG
GATAAAGACGATTCAAGGGAAAACAGTTCCAATCAAGAGAACCAAAACGG
TGGAACCGAAGAACACGAACAAGGAAACAGTAGTCAAAATCCGGACCAAG
ATGGTACAAACGGAAGAATTAGCCAATCTCTCGATCCAAACGATGACGAG
AAAGGAGAACAAGAGGAAGAAAAGATGTATATGGTCGAGAGAAtactgaa
aatgaagatgaaaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGAACAAGAGGAAGAAAAGATGTATAT
GGTCGAGAGAAtactgaaaatgaagatgaaaagaagCAAGAGATACTTCT
TAATCAAATGGCAGGATTTTCCCGACGAGGAGAATACATGGGAACCAGAA
GAGCATCTAGACACAATTTTGGTCGAGCAATACCTCGAATCTCAAACGCA
AATGAATGCAATAGCAGTTACAAGGAATCGAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004882-exon-sc0000049-1491911889:833633..834794 | TCONS_00004882-exon-sc0000049-1491911889:833633..834794 | Clytia hemisphaerica | exon |
| TCONS_00004882-exon-sc0000049-1510915933:833633..834794 | TCONS_00004882-exon-sc0000049-1510915933:833633..834794 | Clytia hemisphaerica | exon |
| TCONS_00004882-exon-sc0000049-1575043694:833633..834794 | TCONS_00004882-exon-sc0000049-1575043694:833633..834794 | Clytia hemisphaerica | exon |
| TCONS_00004882-exon-sc0000049-1491911889:834871..835031 | TCONS_00004882-exon-sc0000049-1491911889:834871..835031 | Clytia hemisphaerica | exon |
| TCONS_00004882-exon-sc0000049-1510915933:834871..835031 | TCONS_00004882-exon-sc0000049-1510915933:834871..835031 | Clytia hemisphaerica | exon |
| TCONS_00004882-exon-sc0000049-1575043694:834871..835031 | TCONS_00004882-exon-sc0000049-1575043694:834871..835031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:833633..835031 + |
Blast
The following BLAST results are available for this feature:
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