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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050331 ID=TCONS_00050331|Name=TCONS_00050331|organism=Clytia hemisphaerica|type=transcript|length=2561bp
CATGCATGTCTCTCGCCCTTTGTCTTTTATTCTAtaggttgaaataaaaa
aataagaaatgaaaattatagACAAAGTCAGTacataaaataataaataa
ttactCAATTTCTGATGGTATGGATGGTGGAAAAAATTGGGAATGGCTAA
CAGAGAATTCCTTCAGAAAATTGACCAATTCACTTCAGAAGACTTTTGTG
CTGAGTCTATAAACTGTCTTCAATCTCtcaaaaatgaatcaaaaactGAT
GTCAAATGTCGTATGGAATTGTTTGTTATGTACCTTCAAGAGAAATTGGT
CAGTGCCTTACAATCATACGAACCAACAAGATGCTTTTGTATTGACCGCT
GGTTGAAGGATGACACTGGTGGTGGAATTAGTTGCGTTTTACAAGACGGT
GTCAGCTGCATAATTCACCCAAAGAATCCTTTTGTTCCATCAATGCATTT
TAACTTCAGATACTTCGAGACATCAAACAATGAAGATGAAATTGGCCATT
TTTGGTTTGGCGGTGGAATTGATATGACACCAACCTATTTGGATCAGCAG
gATGCTGAGCATTTTCACCAAACAATAAAAACAGCCTGTGATAAACATGA
CAAAGATTATTATCCTCGATACAAGAAATTATGTGATGACAGTCTCTTCC
TAGAAATCTGTGATGAATACCGAGGTATTGGTGGGTTCATGTTTAATGAA
TTGAAGGATGGAAATCTTGaagatttgtttgattttgttgtgacGTGTGG
ACACGCTGTTCTACCCTCTTACATACCTATTGTTAATAAACATTTAAATG
ATCCTTATGATGAAGAGAATATCTTTTGGCAACGACAAAGGAGGGGAAGA
TATGTTTTATTCAACCTTTTGTATGACCGAGGTACACGTTTTGGTTTACT
GACACCTGGCATAAGAGTGGAAAACGTTTTAATTTCTATGCCATTGAATG
CTGCTTGGGATATTCGTTATGTACCTACACCTGGTTCAAAAGAGGACGAT
ATGTTACAGTTTTTGAAAAGGAAACCAAAAGACTGGGCATGATTCTTgtc
tttattgattttcttcaaaCATTTAAGTTTAACCTTTAAAATTTGCATGA
AACTTGAATTAAAGGCTACTCGGGTTAATCAGGGTTCTTAGTCCTAGAAA
CATAAATTCTTTTTAATGTCGTTTATCCTTTGTAAACCTGGGGACCTAAT
CTTATGTCGATTTTAGGGGTTAATAGCTGGTTTAAAAGATTTAAAGatgt
aaaaagattttaaggTGTTAATAGTTTTTCTGTTTGTTATGTATAGATTT
AGTTTTATTTGTAATGTATAGATTTAGATTTATTTCATTTCTATGAATTT
GTTGTATGTTTagtgttttttttgaaaattgattaaaagtAAGATATGGG
GACGTGACTTAAAAAGGGCCTGAGTTGGATAGAATAGCGTGGTGGGAGGG
GGAGGTGCCTTCAGCCAAAAAGAGGAAATCTGTTCCAAATCTGCTCGCGC
AATACTCTAAAACATATTTCTCTTGCTATGGGGAAGGGATGGGTTGgtgt
attattttttaatattattccattttttttttgggaataacttttgaacc
aatgaagtaaaattaaaaagtaatacacgAAATTTTAAGTATATCTTTCC
TCTTAATTTCCgaagcaatttttgaaaaacctttCTACTACCTGCAATAT
CAAAttaaagagggtaacttatttctggCACGACCAGCAGACtattcata
attttaaaaaccataatataattttaacttgttttttttttatcattggT
ACGAAAGGACCAACAAGATTGTAAATTGCATAAATTTATCAGATGATATT
CAGATTCGATAATTTTAATCACTCTGGGCAGCTTAACGAACACCCGATCT
GTGGTCAAGGTCCACCGCGTTCACAACCTATGAACGTAGAAGACTTTACA
AATTCTTCTTGGGTTCAGTTggattttaaaactttattaagATTTTTTAT
TGATACACTTAactatagattttttttaaacagatatCTTATAGGTAACG
TATTAGCATCATCGTCTCAAAACCTCAATTCTGTacatttgtttacattt
tccaTTATTaggatttttaaaaacaataatttttagctttttcacttttt
ttctttaatttttaaattattttaagtaTTGTAcattttttctagttttt
ctAACCCCAAAGTAAAGCAGATTTACCCTAAACATGTTAGCTTTGTTGGT
TCGGTAAGAACTTAACAGGCCGATGATTTATGGAAAATCTGCCAACTTTT
TTCACGGTTGCCTTTAGTGCGGAAAGCTTCTGGCGCGTTTCCTGTTGCTG
TAAGTAAAAGGCTAATAATTCTTGGCTCAATTTAGCATTATTGAGCAGTA
TCATTCAATTCAGAGCCATTTTAACCATAAAGAGAAATTGTTTAAACAAA
TTATCAAGGCTTGTATTGATACACCAATGTGTgcatatttcattttcatt
tttagattttataattagctttaatttttctttttaaattcatgTTAATT
CAATATATCAG Run BLAST on NCBI transcript from alignment at scaffold_169:461950..467399+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050331 ID=TCONS_00050331|Name=TCONS_00050331|organism=Clytia hemisphaerica|type=transcript|length=5450bp|location=Sequence derived from alignment at scaffold_169:461950..467399+ (Clytia hemisphaerica)
CATGCATGTCTCTCGCCCTTTGTCTTTTATTCTAtaggttgaaataaaaa
aataagaaatgaaaattatagACAAAGTCAGTacataaaataataaataa
ttactCAATTTCTGATGGTATGGATGGTGGAAAAAATTGGGAATGGCTAA
CAGAGAATTCCTTCAGAAAATTGACCAATTCACTTCAGAAGACTTTTGTG
CTGAGTCTATAAACTGTCTTCAATCTCtcaaaaatgaatcaaaaactGAT
GTCAAATGTCGTATGGAATTGTTTGTTATGTACCTTCAAGAGAAATTGGT
CAGTGCCTTACAATCATACGAACCAACAAGATGCTTTTGTATTGACCGCT
GGTTGAAGGATGACACTGGTGGTGGAATTAGTTGCGTTTTACAAGACGGT
AAAGTCTTTTACAGTTTTTTATCTCTGTcattacttgacctcgggcaata
tttctcagtacagccctcactaaccggtcaaaTCGAGTNCCAGAGTTTAC
TCTCAGAATTACTCTGTATAGCACAACTGTGGTGTGTGTGATTATACAAA
TATTTTATTGATGTTGTTCTTGCAAATGAGAAGAGGTCCTCCACATAGTA
TGTTTGCAAAACTTTTTCGGATATAGCCTTTTCTAATTCAGAACACTGGC
GTTGGGCAAAAATTCTGGGTTCTATAGTACAGTGAGCACTTTTACGTCGG
CAAAAGCCAAATTTACGTCAGAATTAGAACGGCTGAGNTAAAAGTTTCAA
GGATGAAAAAATCTAGGGAGAGCAAGTCAAGTGTATTTTTGCTCCTCATT
AAATAGAATTCATAGAATTGAATCTTCCGCTCTGACATTGATcatacttt
ctttttttctccatctaggagatgtttttgaaaaagctgGTGTTAATATA
TCTATTTTGAGTGCCAATTTGCAAGAAAATCATCGGAAAATCTTTGAAAG
CAGAGGGAGTATGGTAAAATCTGATCAAACAAAATTCTCAGCGAGAGGTT
CGattgttatcatttttaaagTTGTCCCGTAATTTACACTTtacttcttc
atctttattATTCCACacgctgactcagcaaaaaaatgATTAATTTCAAT
ACGATTTGGATTGAGTTAAAGGACATACCATTTGCTCACTTACTTTGCTT
AGACACATtcttaacaaaggaaaaaacaattttctctTCTTGCTGCGCCA
CACGATCACTAATTTTGAGAAATGTTATTGTTAACTATGCTTTGtcagta
ttcatgatatgcaccattacaatgtcttctaggggatccaacagctgatt
gtttgaaagtgacgtattgactgactTTACGTCACCTACAACCAATCATC
TATTGGATCCGTGATGTAATTTCAGAatacattgcaatggtgcatatcat
aaaaaGAGCAGACAGGGTCACCTTTTTCTATGTcataaatctttaaattt
taaccTTCATTGCAAGATAATCTCTTCGTTGTGTTTTATCTAATTTAGGT
GTCAGCTGCATAATTCACCCAAAGAATCCTTTTGTTCCATCAATGCATTT
TAACTTCAGATACTTCGAGACATCAAACAATGAAGATGAAATTGGCCATT
TTTGGTTTGGCGGTGGAATTGATATGACACCAACCTATTTGGATCAGCAG
GTTGTTATGCAGCCAAATACAAataattatatatatatatttaattcttt
tttttattcaattggagTAAAATATGAAGCATTAAGATTGTAACCATACT
GTGTCAATCAAACAGAATTGACCATCAAAGAAATGAAACAAATTCTAATT
ACTTGGTCCAGAGTTTACTCTCAGAATTACTCTGTATAGCACAACTGTGG
TGTGTGTGATTATACAAATATTTTATTGATGTTGTTCTTGCAAATGAGAA
GAGGTCCTCCACATAGTATGTTTGCAAAACTTTTTCGGATATAGCCTTTT
CTAATTCAGAACACTGGCGTTGGGCAAAAATTCTGGGTTCTATAGTACAG
TGAGCACTTTTACGTCGGCAAAAGCCAAATTTACGTCAGAATTAGAACGG
CTGAGACACTCGACACCCCCTCCCCTTGTATGCAGAGAACACTAGATATG
CCTTCATCTAAATAATAGACACGCTTTTGCTAATCAACCTCCCCCCTTTC
ACTGCAAACGTACTATGGATAGCCTCGAATGATAACTcaataatattata
ttgttagATAACTctactttagacagcccacttttcGCCCAGCCTATTCt
gattgtgaattaaagttggcATAAAGTGGACTGACTAAAGttaatgcatt
gccctcttttgacgtcaatgcaatgacttctttcaatcttttccaagcaT
AGATTTTAACTACCAACTTTTTGTCTACTCTAAGAATTAAAATAGGAATG
GCAAAAAGTGAAAAGTCTAAACCAGAGcttaaaattttataaacttgtag
ttcatcttcttctttttttattgtaggATGCTGAGCATTTTCACCAAACA
ATAAAAACAGCCTGTGATAAACATGACAAAGATTATTATCCTCGATACAA
GAAATTATGTGATGACAGTCTCTTCCTAGAAATCTGTGGTAACTTTTCAG
TTCGAATTCAATTtggatttttggtcattttaaaCTCTTCTTTAGAACAT
TTATGTAGTCTAAActtctcaaaaaaattctaatcaTGCAATTGAATACT
CATGTAATAACTCTCATAATAATCTTATCGTTATTCATGATATccgttgc
aatgtcttctaacgTTAATTCACAGACCCAACAACTccttggttgtaagt
gacgtaaaatctgACAATACATAatttgcaaccaatcagctgttgggttc
gtgatgtaatgtcagaagacatcacaatggcgcatatcatgaattcttaT
TATTCTGGTGACCGTAGcataaaggtagagcatccagctacggtgcgcaa
ggttgtgggctCCCAGTCGGGTTTCCCAAAAtgatacttgatgcctctct
actTGATGCTCACCAACTAAAGAGACGAATCAAGAGTAAGttgagaaatc
cagggaaagaagtggcgccctctcctaccatcaggtagacagctatacga
aaagggagccttcgggtcgccctcgactgcggttgCAAACTTACTACAAC
TGATTTCTCATACAGATGAATACCGAGGTATTGGTGGGTTCATGTTTAAT
GAATTGAAGGATGGAAATCTTGaagatttgtttgattttgttgtgacGTG
TGGACACGCTGTTCTACCCTCTTACATACCTATTGTTAATAAACATTTAA
ATGATCCTTATGATGAAGAGAATATCTTTTGGCAACGACAAAGGAGGGGA
AGGTATATGTTTGTTGGTGGTATTAATTTATAATattcattttttcatca
attttaactacatttctttatttttgtttaataatAGCTACATATTGGTC
ATTTTGGCCTATACATGTTATCTAACATCAAATTAGAAACTATTCATTTC
ATTTTCTCGCATGTCTGAAAACAAGCTCCAGTTTAGACGGCTGACCTTCG
GCCCTGCCAATTCTGATTTTGGAGTAGGCAGAAAGTGGGCAAAAAGTTGG
CAGTTAGTGGATGGGCAGAAAGGTTGACAGACGTAATAAATCTTCTTAAA
ACTGCCTACGAAAtgtaaactttttaaaatttattcctTCCTTTCTGTAA
CTGCctgtttttgtaattttttcttccaTCTTTTTCAGATATGTTTTATT
CAACCTTTTGTATGACCGAGGTACACGTTTTGGTTTACTGACACCTGGCA
TAAGAGTGGAAAACGTTTTAATTTCTATGCCATTGAATGCTGCTTGGGAT
ATTCGTTATGTACCTACACCTGGTTCAAAAGAGGACGATATGTTACAGTT
TTTGAAAAGGAAACCAAAAGACTGGGCATGATTCTTgtctttattgattt
tcttcaaaCATTTAAGTTTAACCTTTAAAATTTGCATGAAACTTGAATTA
AAGGCTACTCGGGTTAATCAGGGTTCTTAGTCCTAGAAACATAAATTCTT
TTTAATGTCGTTTATCCTTTGTAAACCTGGGGACCTAATCTTATGTCGAT
TTTAGGGGTTAATAGCTGGTTTAAAAGATTTAAAGatgtaaaaagatttt
aaggTGTTAATAGTTTTTCTGTTTGTTATGTATAGATTTAGTTTTATTTG
TAATGTATAGATTTAGATTTATTTCATTTCTATGAATTTGTTGTATGTTT
agtgttttttttgaaaattgattaaaagtAAGATATGGGGACGTGACTTA
AAAAGGGCCTGAGTTGGATAGAATAGCGTGGTGGGAGGGGGAGGTGCCTT
CAGCCAAAAAGAGGAAATCTGTTCCAAATCTGCTCGCGCAATACTCTAAA
ACATATTTCTCTTGCTATGGGGAAGGGATGGGTTGgtgtattatttttta
atattattccattttttttttgggaataacttttgaaccaatgaagtaaa
attaaaaagtaatacacgAAATTTTAAGTATATCTTTCCTCTTAATTTCC
gaagcaatttttgaaaaacctttCTACTACCTGCAATATCAAAttaaaga
gggtaacttatttctggCACGACCAGCAGACtattcataattttaaaaac
cataatataattttaacttgttttttttttatcattggTACGAAAGGACC
AACAAGATTGTAAATTGCATAAATTTATCAGATGATATTCAGATTCGATA
ATTTTAATCACTCTGGGCAGCTTAACGAACACCCGATCTGTGGTCAAGGT
CCACCGCGTTCACAACCTATGAACGTAGAAGACTTTACAAATTCTTCTTG
GGTTCAGTTggattttaaaactttattaagATTTTTTATTGATACACTTA
actatagattttttttaaacagatatCTTATAGGTAACGTATTAGCATCA
TCGTCTCAAAACCTCAATTCTGTacatttgtttacattttccaTTATTag
gatttttaaaaacaataatttttagctttttcactttttttctttaattt
ttaaattattttaagtaTTGTAcattttttctagtttttctAACCCCAAA
GTAAAGCAGATTTACCCTAAACATGTTAGCTTTGTTGGTTCGGTAAGAAC
TTAACAGGCCGATGATTTATGGAAAATCTGCCAACTTTTTTCACGGTTGC
CTTTAGTGCGGAAAGCTTCTGGCGCGTTTCCTGTTGCTGTAAGTAAAAGG
CTAATAATTCTTGGCTCAATTTAGCATTATTGAGCAGTATCATTCAATTC
AGAGCCATTTTAACCATAAAGAGAAATTGTTTAAACAAATTATCAAGGCT
TGTATTGATACACCAATGTGTgcatatttcattttcatttttagatttta
taattagctttaatttttctttttaaattcatgTTAATTCAATATATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050331-exon-scaffold_169-1491911889:461950..462347 | TCONS_00050331-exon-scaffold_169-1491911889:461950..462347 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1510915933:461950..462347 | TCONS_00050331-exon-scaffold_169-1510915933:461950..462347 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1575043694:461950..462347 | TCONS_00050331-exon-scaffold_169-1575043694:461950..462347 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1491911889:463448..463599 | TCONS_00050331-exon-scaffold_169-1491911889:463448..463599 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1510915933:463448..463599 | TCONS_00050331-exon-scaffold_169-1510915933:463448..463599 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1575043694:463448..463599 | TCONS_00050331-exon-scaffold_169-1575043694:463448..463599 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1491911889:464426..464537 | TCONS_00050331-exon-scaffold_169-1491911889:464426..464537 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1510915933:464426..464537 | TCONS_00050331-exon-scaffold_169-1510915933:464426..464537 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1575043694:464426..464537 | TCONS_00050331-exon-scaffold_169-1575043694:464426..464537 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1491911889:465115..465301 | TCONS_00050331-exon-scaffold_169-1491911889:465115..465301 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1510915933:465115..465301 | TCONS_00050331-exon-scaffold_169-1510915933:465115..465301 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1575043694:465115..465301 | TCONS_00050331-exon-scaffold_169-1575043694:465115..465301 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1491911889:465688..467399 | TCONS_00050331-exon-scaffold_169-1491911889:465688..467399 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1510915933:465688..467399 | TCONS_00050331-exon-scaffold_169-1510915933:465688..467399 | Clytia hemisphaerica | exon |
| TCONS_00050331-exon-scaffold_169-1575043694:465688..467399 | TCONS_00050331-exon-scaffold_169-1575043694:465688..467399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:461950..467399 + |
Blast
BLAST of TCONS_00050331 vs. Swiss-Prot (Human)
Match: HEM6 (Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3) HSP 1 Score: 281.952 bits (720), Expect = 6.482e-85 Identity = 141/327 (43.12%), Postives = 192/327 (58.72%), Query Frame = 2
Query: 191 DFCAESINCLQSLKNESKTDVKCRMELFVMYLQEKLVSALQSYEPTRCFCIDRWLKDDTGGGISCVLQDG---------------------------------------------VSCIIHPKNPFVPSMHFNFRYFETSNNEDEIGHFWFGGGIDMTPTYLDQQDAEHFHQTIKTACDKHDKDYYPRYKKLCDDSLFLEICDEYRGIGGFMFNELKDGNLEDLFDFVVTCGHAVLPSYIPIVNKHLNDPYDEENIFWQRQRRGRYVLFNLLYDRGTRFGLLTPGIRVENVLISMPLNAAWDIRYVPTPGSKEDDMLQFLKRKPKDW 1036
F A + L L+ D+K +MEL ++ Q ++ AL + F +DRW + + GGGISCVLQDG VS +IHPKNP P++HFN+RYFE D +WFGGG D+TPTYL+Q+DA HFH+T+K ACD+H D YP++KK CDD F+ E RGIGG F++L + E++F FV +C AV+PSYIP+V KH +D + + WQ+ RRGRYV FNLLYDRGT+FGL TPG R+E++L+S+PL A W+ + P+ SKE ++L+ L R P+DW
Sbjct: 129 SFMAPPVTDLGELRRRP-GDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEV-EEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVL-RHPRDW 452
The following BLAST results are available for this feature:
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