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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004881 ID=TCONS_00004881|Name=TCONS_00004881|organism=Clytia hemisphaerica|type=transcript|length=816bp
AAGTACCTCTTATTGAGATGCTTGTAATGATCTGTCGCTTTTGATTTCTA
GTACATattctctatttttttttcttatcttttagcgaaaataaataaca
aagaataaataaataaagagATAATTGAACAACATATCAAGGAAGATGAG
AGTTTTGAACATCATTTGTTTACTTTGCTTGGTCACATTGATCAAAGTTA
CCGAAGGAAGACCAAAAATGAGCAAATGCGTCGTTACGAAGATCAGGTGG
AGTGGAATCGAATGTCAAGAGATCGATAAAAGCATTGATGAAAAAAAACT
TATGGCAATTTTGGCACGAAACTACAAGAGCAAATTTACATCTCTGCTGA
AAGGCTATAACGGTAAAGGTCCCATGCGAGCTGATGTAAAAAAGAGATTA
CTAAAAGAATTGGCGAAAGCGAGAAATCTTTTATGGGCAGTCTGATCTTT
GGAATGCAACAGAACTTGTAGTGAAATAACATTATTGATAAATCAAAGAC
AGGAAAGATGTTTTAAGTTTCAGCATTCAAGTGCCAACGGACAAAGTTGG
TGATAATAAGCGTTCACAAATGCAAGAAGTCTATTATATTGTgaagaaaa
ttatatttaaaagtGTTATTGCTGCAAATATGTATGTCACTTACCATTGA
TAAAAATGCTCTTACTTCGTGAATTCGTGTTATTTTCCCCAATCTCCAAG
TCGTTGGAATATAATgtttgacttttatttttaaacaaatgcTGTCATTG
AGATATGCACAGATTTTAACTTAtatatttttgttgttgttattgtttaT
TATGCTAATATTTACA Run BLAST on NCBI protein sequence of TCONS_00004881-protein >TCONS_00004881-protein ID=TCONS_00004881-protein|Name=TCONS_00004881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MRVLNIICLLCLVTLIKVTEGRPKMSKCVVTKIRWSGIECQEIDKSIDEK
KLMAILARNYKSKFTSLLKGYNGKGPMRADVKKRLLKELAKARNLLWAV Run BLAST on NCBI transcript from alignment at sc0000049:816727..818296+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004881 ID=TCONS_00004881|Name=TCONS_00004881|organism=Clytia hemisphaerica|type=transcript|length=1570bp|location=Sequence derived from alignment at sc0000049:816727..818296+ (Clytia hemisphaerica)
AAGTACCTCTTATTGAGATGCTTGTAATGATCTGTCGCTTTTGATTTCTA
GTACATattctctatttttttttcttatcttttagcgaaaataaataaca
aagaataaataaataaagagATAATTGAACAACATATCAAGGAAGATGAG
AGTTTTGAACATCATTTGTTTACTTTGCTTGGTCACATTGATCAAAGTTA
CCGAAGGAAGACCAAAAATGAGCAAATGCGTCGTTACGAAGATCAGGTGG
AGTGGAATCGAATGTCAAGAGATCGATAAAAGCATTGATGAAAAAAGTAA
GTGTTTCATCCAAACTTTTAAGATGGAGATAATGTCAAAAATAAGTTTCC
GATATTGAGCATCAGTTATATTTAGTTGTCAGCACTTAATTTGTGGTAAC
TAAAAATATCGTCAACATGTTTTTCATTATGTAAGGCATGCATAGCTTCA
AAGGACCACAATTGCTGCTTGAGGTTAATCAACAGTAATTATACTAAATA
TCCAAAGCTCATTATCGAAACCTAATCAAAAACATGCttataattaaatt
aaattattaGCCATAActtaatttctcttttttatatatTGATTATTAAT
ACAAATTTAAGAGCTTAAGTTCTTTATAGTTATAGTAactaaacaacaaa
atcaatcaatgatgatcaatttaaaaatttaattgtgCATTACTTTAttc
gaaaataaataaaaacaacactAAGAGGTTACTCATCTGGACGATCTTAG
CATAAAAACATTCTATTATCTTTCGCGAATGTCAATTAGTATAAATGATG
ATTATAttagttgttttttgttttcacgaACAAAATGATCTGATTGAGCT
CTAAATGCTGGCAACATAGGAAATGAACCGCCTCATTATAATGACATGAA
gctaaaaatagtcaaaaaacttAATTGGTAAAACAAAGCTAATCATTCTT
GTTTGTCGCAAATAAATGCAATGAACGTGTTTCGAATAACTTGAAACAAT
ATTAAagtacaaaaataaatatcttacATATAATTTCTCTTTCCTTTCAG
AACTTATGGCAATTTTGGCACGAAACTACAAGAGCAAATTTACATCTCTG
CTGAAAGGCTATAACGGTAAAGGTCCCATGCGAGCTGATGTAAAAAAGAG
ATTACTAAAAGAATTGGCGAAAGCGAGAAATCTTTTATGGGCAGTCTGAT
CTTTGGAATGCAACAGAACTTGTAGTGAAATAACATTATTGATAAATCAA
AGACAGGAAAGATGTTTTAAGTTTCAGCATTCAAGTGCCAACGGACAAAG
TTGGTGATAATAAGCGTTCACAAATGCAAGAAGTCTATTATATTGTgaag
aaaattatatttaaaagtGTTATTGCTGCAAATATGTATGTCACTTACCA
TTGATAAAAATGCTCTTACTTCGTGAATTCGTGTTATTTTCCCCAATCTC
CAAGTCGTTGGAATATAATgtttgacttttatttttaaacaaatgcTGTC
ATTGAGATATGCACAGATTTTAACTTAtatatttttgttgttgttattgt
ttaTTATGCTAATATTTACA Coding sequence (CDS) from alignment at sc0000049:816727..818296+ >TCONS_00004881 ID=TCONS_00004881|Name=TCONS_00004881|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000049:816727..818296+ (Clytia hemisphaerica)
ATGAGAGTTTTGAACATCATTTGTTTACTTTGCTTGGTCACATTGATCAA
AGTTACCGAAGGAAGACCAAAAATGAGCAAATGCGTCGTTACGAAGATCA
GGTGGAGTGGAATCGAATGTCAAGAGATCGATAAAAGCATTGATGAAAAA
AAACTTATGGCAATTTTGGCACGAAACTACAAGAGCAAATTTACATCTCT
GCTGAAAGGCTATAACGGTAAAGGTCCCATGCGAGCTGATGTAAAAAAGA
GATTACTAAAAGAATTGGCGAAAGCGAGAAATCTTTTATGGGCAGTCTGA
ATGAGAGTTTTGAACATCATTTGTTTACTTTGCTTGGTCACATTGATCAA
AGTTACCGAAGGAAGACCAAAAATGAGCAAATGCGTCGTTACGAAGATCA
GGTGGAGTGGAATCGAATGTCAAGAGATCGATAAAAGCATTGATGAAAAA
AAACTTATGGCAATTTTGGCACGAAACTACAAGAGCAAATTTACATCTCT
GCTGAAAGGCTATAACGGTAAAGGTCCCATGCGAGCTGATGTAAAAAAGA
GATTACTAAAAGAATTGGCGAAAGCGAGAAATCTTTTATGGGCAGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004881-exon-sc0000049-1491911889:816727..817022 | TCONS_00004881-exon-sc0000049-1491911889:816727..817022 | Clytia hemisphaerica | exon |
| TCONS_00004881-exon-sc0000049-1510915933:816727..817022 | TCONS_00004881-exon-sc0000049-1510915933:816727..817022 | Clytia hemisphaerica | exon |
| TCONS_00004881-exon-sc0000049-1575043694:816727..817022 | TCONS_00004881-exon-sc0000049-1575043694:816727..817022 | Clytia hemisphaerica | exon |
| TCONS_00004881-exon-sc0000049-1491911889:817777..818296 | TCONS_00004881-exon-sc0000049-1491911889:817777..818296 | Clytia hemisphaerica | exon |
| TCONS_00004881-exon-sc0000049-1510915933:817777..818296 | TCONS_00004881-exon-sc0000049-1510915933:817777..818296 | Clytia hemisphaerica | exon |
| TCONS_00004881-exon-sc0000049-1575043694:817777..818296 | TCONS_00004881-exon-sc0000049-1575043694:817777..818296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:816727..818296 + |
Blast
The following BLAST results are available for this feature:
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