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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053908 ID=TCONS_00053908|Name=TCONS_00053908|organism=Clytia hemisphaerica|type=transcript|length=1373bp
aggttttacGAACGTTTGCAGGTAATTGCCAAAGAAAATGATGAGAAGAA
CGCAAAAAGGAGATTCGCCTATCCGTGGTTGTCACCTAAAGTCGTTCCCA
ACTCTATCAGTATTTAAGGTGCAATAATCATAATTGGAGATTTGAATATG
CAATTATACGTCATCATATATTTTAAAACCCGTCTGGTATATATTGTTAT
GTTATGTGAATattgtactttaatgggatgaACTTTCgaggggattaaat
ttcacggttgggcctatccgcgaaattcaaaaatttcgtgGGGACTTAAT
TTCACGGTTGGCACTATTGGGttgcaatattttcacgattttgtgacttt
tactgccaaatcatgcatgttggttgttgaaatatacATTATTTgtgcct
ctttgatgcaagtaaccattcaaaaagtatttatttgacatattttgagt
tttgtttagaaatatttcgcggatgaggccctacCAAATCTCCTTTGGGA
CTTTTTTTTTGGATGACACCCCAATCCACCAAAtccgcaaaagtttatcc
cattaacgTACGAACGTGAGAAAGATGTTATAATGACGTTATGTTGGAAC
TGGGAAACAATTATTAATACACcgttttatttaaatattttaactGCTTT
TTTGTTAATTATTTTACTTTAATTGTTTAATTTCTTCCTTCACATACATT
ATTATTTTAAGATTCAAGCATGGATCTTGCTACAAAAGAACTAAACGCAG
TCGACCGATGATTTAAGGCAAGTCCTGGACATCTTACATGATGCAAAGCC
ATCACTCGTTTCCCATTGAATTGCCCAAAGTCACCagaacacacacacac
acacacactttTCCAAATAACAATTTGATGTATTTAAACCCATTGGATTG
GAAACCTGCAATTATACCCTTTCTTATACCCTTTCAGAACATTTTAGTTG
TTAGTTTAATTTTAATATTCTATCGGGTAATATACATGATAACAATATTG
GGAGTaaagagaaaaataatcaaCCCGATGTGGAGTTTACTTCATATTTG
ACAAAAACCAAGTGAAAATAGCGAAATGTTAttgttttttagattttaaa
gtCCACTGAAAAATTGAAGACTTGTAAGAATATCCAGAATCAATAGCAAA
CAATACTAAGCTTCAGTGTACAAAATTTTAAATCCcatctggcacacaac
gttgtttcaacgtccatctaacgttatatggacgttgggaatgttagata
aacgttgaaagaacgttgtgtgccggctgggtagCATTAGATCtcaataa
aaaaacatgtatgaagTCAGTGCCAAAATAATctgcagtggagacaaaaa
aaggttctaacttttgataggat Run BLAST on NCBI transcript from alignment at scaffold_236:1389..2761- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053908 ID=TCONS_00053908|Name=TCONS_00053908|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at scaffold_236:1389..2761- (Clytia hemisphaerica)
AGGTTTTACGAACGTTTGCAGGTAATTGCCAAAGAAAATGATGAGAAGAA
CGCAAAAAGGAGATTCGCCTATCCGTGGTTGTCACCTAAAGTCGTTCCCA
ACTCTATCAGTATTTAAGGTGCAATAATCATAATTGGAGATTTGAATATG
CAATTATACGTCATCATATATTTTAAAACCCGTCTGGTATATATTGTTAT
GTTATGTGAATATTGTACTTTAATGGGATGAACTTTCGAGGGGATTAAAT
TTCACGGTTGGGCCTATCCGCGAAATTCAAAAATTTCGTGGGGACTTAAT
TTCACGGTTGGCACTATTGGGTTGCAATATTTTCACGATTTTGTGACTTT
TACTGCCAAATCATGCATGTTGGTTGTTGAAATATACATTATTTGTGCCT
CTTTGATGCAAGTAACCATTCAAAAAGTATTTATTTGACATATTTTGAGT
TTTGTTTAGAAATATTTCGCGGATGAGGCCCTACCAAATCTCCTTTGGGA
CTTTTTTTTTGGATGACACCCCAATCCACCAAATCCGCAAAAGTTTATCC
CATTAACGTACGAACGTGAGAAAGATGTTATAATGACGTTATGTTGGAAC
TGGGAAACAATTATTAATACACCGTTTTATTTAAATATTTTAACTGCTTT
TTTGTTAATTATTTTACTTTAATTGTTTAATTTCTTCCTTCACATACATT
ATTATTTTAAGATTCAAGCATGGATCTTGCTACAAAAGAACTAAACGCAG
TCGACCGATGATTTAAGGCAAGTCCTGGACATCTTACATGATGCAAAGCC
ATCACTCGTTTCCCATTGAATTGCCCAAAGTCACCAGAACACACACACAC
ACACACACTTTTCCAAATAACAATTTGATGTATTTAAACCCATTGGATTG
GAAACCTGCAATTATACCCTTTCTTATACCCTTTCAGAACATTTTAGTTG
TTAGTTTAATTTTAATATTCTATCGGGTAATATACATGATAACAATATTG
GGAGTAAAGAGAAAAATAATCAACCCGATGTGGAGTTTACTTCATATTTG
ACAAAAACCAAGTGAAAATAGCGAAATGTTATTGTTTTTTAGATTTTAAA
GTCCACTGAAAAATTGAAGACTTGTAAGAATATCCAGAATCAATAGCAAA
CAATACTAAGCTTCAGTGTACAAAATTTTAAATCCCATCTGGCACACAAC
GTTGTTTCAACGTCCATCTAACGTTATATGGACGTTGGGAATGTTAGATA
AACGTTGAAAGAACGTTGTGTGCCGGCTGGGTAGCATTAGATCTCAATAA
AAAAACATGTATGAAGTCAGTGCCAAAATAATCTGCAGTGGAGACAAAAA
AAGGTTCTAACTTTTGATAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053908-exon-scaffold_236-1575043694:1389..2761 | TCONS_00053908-exon-scaffold_236-1575043694:1389..2761 | Clytia hemisphaerica | exon |
| TCONS_00053908-exon-scaffold_236-1510915933:1389..2761 | TCONS_00053908-exon-scaffold_236-1510915933:1389..2761 | Clytia hemisphaerica | exon |
| TCONS_00053908-exon-scaffold_236-1491911889:1389..2761 | TCONS_00053908-exon-scaffold_236-1491911889:1389..2761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_236 | supercontig | scaffold_236:1389..2761 - |
Blast
The following BLAST results are available for this feature:
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