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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050307 ID=TCONS_00050307|Name=TCONS_00050307|organism=Clytia hemisphaerica|type=transcript|length=391bp
tttaatatattttGCTATATAGACCTATTCTCGTGAATATAATAAGAAAT
TAAAAAGAAGTGCTATATACAAATATATGTAAATTAGTTTTCTTGGGGTA
TAAATAAGGTGTCAATAGTTGTCAAAATGAGACAATTTAAGGAACTATTC
GCTTCAGTCATCGCCTTGTCATCCTCTACCGGAGCTAGCAAAATCTATTT
TGATTTCACAAATAATGGCAAAAAATCTTCTTCCTACTGTGAGGTAGCTT
TGAAGAATCAGCAACCTTCTCAAAAGcaaagaacaattttccatGATTTC
GATTCGGTTCAAGTGTCACTACTACTGGGTACTACATAGAATTCGGGCTT
TTCATTCTATGGCTACAAGAAATAAATTTATTGAAACCCAA Run BLAST on NCBI transcript from alignment at scaffold_169:176574..178246+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050307 ID=TCONS_00050307|Name=TCONS_00050307|organism=Clytia hemisphaerica|type=transcript|length=1673bp|location=Sequence derived from alignment at scaffold_169:176574..178246+ (Clytia hemisphaerica)
tttaatatattttGCTATATAGACCTATTCTCGTGAATATAATAAGAAAT
TAAAAAGAAGTGCTATATACAAATATATGTAAATTAGTTTTCTTGGGGTA
TAAATAAGGTATGAAATTGTTTGTTTCTAATAATTTACCTaatcaaaata
attgataatatgAGAAAATAACGGAAAAGACTGCTTTAAAAAAGCTAAGT
TTTGAGGTATATTAGTCCTGAGTTGTCGAGAGTAATTAGGATATGTATAA
GACCATGCTTTATAGTTTTAAAACATTTGGGCCAATAGTTTAAATAAGTT
ACAATATTGTATAGATgtctgatttttttaatatcaCAGGAATAATTTTC
AGCTGGatagaaacatcaaaataatcaaaaaacgtTCACAGCCTAATATC
CAGGTTAGActatttgagatttttgttaCATTTGATATCCAGCAGAAGTC
TAATATTCCTGGAGCAGTCTTGGGATTTCAGAAgttcttattatttttgt
tcaccataccattttattttatagGTGTCAATAGTTGTCAAAATGAGACA
ATTTAAGGAACTATTCGCTTCAGTCATCGCCTTGTCATCCTCTACCGGAG
CTAGCAAAATCTATTTTGATTTCACAAATAATGGCAAAAAATCTTCTTCC
TACTGTGAGGTAAACGAAAGATACCTTTTCTTCATTCTCTATGATTGTAC
CCTAAGTAGATCATTTAGTTTGGTAGGATTAAAATAGGGTTCGGAGTATG
GACTATTTAGAATTATTGAAAGattcgaaattcgaattagTTAATGTTTA
CATATCGTctacttttgtattttttctcaAGTTGAGCTACATGTAACTTC
CCTCTTCTCTGCCAAAACCCCTTCTTAGTTTGGGTAATTCATTGTTATTA
TtttgcacccctgtctcacagccttggtggaactttttcctacaATTGGG
ATAAAAATTAAAAGCCCAATGGagatagaaattcttttgttccaaGCACA
AAAAATCCAGTTTGGATGGTTTTGGAGAGCAATCTTTTCCATTATCTTTC
GAACGGGGATAAAGATCAAGGTCGATTCCTCAgtgggacttggtattttt
cACATTTCATTTCGGTCATATTTTTCATTGGGGCAAGGGTCCCACGGGGT
CTGTGACATGGGGTGTTATTTTACATGCCTGTATGAATGTGAAAGATATT
ATTTATTGTATGTAAGCTCTTGCTTTCTCTTGGaaacattttgtaaattt
gatacaTCAAAGCTTTGCAAAATGAGTATAATaagtttttgttaatttta
gccaatttttccagttggtccggggggggggggggggccctaaNTTTGCA
AAATGAGTATAATaagtttttgttaattttagccaatttttccagttggt
ccggggggggggtaggtcCCTAATGACGGTTCAGATAATTTTACATTGGA
CTATCAAATCAGAATTAAGGAATCTAGAACCAAACTCTGAATAAAAAATC
ATCTGTAATTTTCTCTATTTTCCAGGTAGCTTTGAAGAATCAGCAACCTT
CTCAAAAGcaaagaacaattttccatGATTTCGATTCGGTTCAAGTGTCA
CTACTACTGGGTACTACATAGAATTCGGGCTTTTCATTCTATGGCTACAA
GAAATAAATTTATTGAAACCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050307-exon-scaffold_169-1491911889:176574..176681 | TCONS_00050307-exon-scaffold_169-1491911889:176574..176681 | Clytia hemisphaerica | exon |
| TCONS_00050307-exon-scaffold_169-1510915933:176574..176681 | TCONS_00050307-exon-scaffold_169-1510915933:176574..176681 | Clytia hemisphaerica | exon |
| TCONS_00050307-exon-scaffold_169-1575043694:176574..176681 | TCONS_00050307-exon-scaffold_169-1575043694:176574..176681 | Clytia hemisphaerica | exon |
| TCONS_00050307-exon-scaffold_169-1491911889:177098..177232 | TCONS_00050307-exon-scaffold_169-1491911889:177098..177232 | Clytia hemisphaerica | exon |
| TCONS_00050307-exon-scaffold_169-1510915933:177098..177232 | TCONS_00050307-exon-scaffold_169-1510915933:177098..177232 | Clytia hemisphaerica | exon |
| TCONS_00050307-exon-scaffold_169-1575043694:177098..177232 | TCONS_00050307-exon-scaffold_169-1575043694:177098..177232 | Clytia hemisphaerica | exon |
| TCONS_00050307-exon-scaffold_169-1491911889:178099..178246 | TCONS_00050307-exon-scaffold_169-1491911889:178099..178246 | Clytia hemisphaerica | exon |
| TCONS_00050307-exon-scaffold_169-1510915933:178099..178246 | TCONS_00050307-exon-scaffold_169-1510915933:178099..178246 | Clytia hemisphaerica | exon |
| TCONS_00050307-exon-scaffold_169-1575043694:178099..178246 | TCONS_00050307-exon-scaffold_169-1575043694:178099..178246 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:176574..178246 + |
Blast
The following BLAST results are available for this feature:
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