TCONS_00049956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049956
Unique NameTCONS_00049956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049956 ID=TCONS_00049956|Name=TCONS_00049956|organism=Clytia hemisphaerica|type=transcript|length=1817bp
aaaaaaattagtgttataaaagaaagttgatattataaaaagaaCTATGG
AGTATAAGAGGCAGAGAACTATGGCTACTCGGATTCTTGAACCAAATGGC
ATAACAACtataaaacaagaaaaattataCGAAAAAGAAATACTAACCGA
CAAGAAACCTCTCTCGTTATGCCGAGTTTGCGGCGACAAATCGTCGGGCA
AACATTATGGCGTCTATACGTGCGACGGTTGTCGTGGTTTTTTCAAACGT
GCCGTACGACGAAATTTGGACTTCCGTTGCAAAGAGAAAGGACAGTGTCA
GGTTGATGTGGCAAGACGGAATCAGTGTCAAGCATGCAGGTGGAAGAAAT
GTTTAGAAGTCAAAATGAACAGAGATGCTGTTCAACACGAACGCCCGCCA
CGCACCGCCCATACTCAAATCAACACatccaacaacaacaataacTTGAG
TCCAACTATGACTCCCCATACAGGTGATACCACCAATCTTCATCACAACA
TTATGGGAGCATATCCAGACCCAAGTTTTATGGCTAACACGGGCGGTCAA
AATAATAACGCCCATCAAAGAAACAACAACAATTTCAATAGTTATAATAA
TAATCAGAATCAACAATTCCACCCTAACATGTATCCACCCTCACACCCTA
GCAATTTCTCACCACCTTATACTCCAGACGATGAAAACCCAGACCGGAAA
AATGGATTCTTAAACATTACGTCACTAATGCAAAACAATAGCAATAACAA
TAGCACAGATTTGATTGACACTCTTCACAATATGCCAGATGATGGTCTGG
ATAATATCAACCATGAATCATTGATTCCAAACATCAACGAATTTCCAACA
CAAAGTATTGTAAATCCTGAAAAAATCTACGAGTCTTCAGTCCGTATTTT
ATACGCATCAGTCAGCTGGGCAAGAAGTATTCCAACTTTTATAGAACTCC
CTTTTACAGACCAAGCTTTATTATTAGAAGAATGTTGGAGTGAACTATTT
ATTCTTTGTATGATTCAATGCTCCGTACCAATGGATCTCAGCGTTCTTCT
TTCCGCCGCGGGTGCACACGCGGAAAAGGAGACATCTTCAAACGTACCAG
GAAGTGTTCAGGACTTAGGTACGCTACAACACATTGTGCAACGATTCCAG
AATCTGGCAATCGACGCAACAGAATTTGCATGTCTCAAAGCTACAGTTCT
TTTCAAACCTGATCTTCCCGGGATACGTAACACACAATACGTTGAACATT
TACAAGACTACGCGCAAAGCATGTTGGGTGAATATGTACGAACTGCTCAT
CCCAACAATCCTGCACGGTTTGGAAAATTGTTGTTGCTGTTGCCATCGTT
ACGCTCCGTTACACCCAAATCGATTGAGAACTTGTTTTTCCGTAGTGGTA
TTGATCAACTCCCTATCTATAAAATGCTGTGCAACATGTTCAAAGCGAAT
TGaattaaaatcaaatgttttgaaGTTGAAATGAATCAGTTGGATTTATG
CCGTGAAAGAGCTTTACATCCAACTCTGTCTTACAGCAAAGAATATGCTG
AATTCGAGAATTTCAAACGTAATGAGAAATTCTCACTCCGAGGGGACAAA
TAAAAAGCAAAATCTAGCaaatttttctatcttttttttttaaacaatta
gatcatttttcattcttttataAACTCATATAAAtccgaattttttttta
cgGACAGTCATTTTTCGTTGTCTTTTTTTCATGTAAATATCTTTTCTATA
TTTCACAAAACTGATAGAGCATTTTTATCGTAATTGATTTTAAAGTATAA
TACAGGTCTaaatttat
Run BLAST on NCBI

protein sequence of Nuclear receptor

>TCONS_00049956-protein ID=TCONS_00049956-protein|Name=Nuclear receptor|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MEYKRQRTMATRILEPNGITTIKQEKLYEKEILTDKKPLSLCRVCGDKSS
GKHYGVYTCDGCRGFFKRAVRRNLDFRCKEKGQCQVDVARRNQCQACRWK
KCLEVKMNRDAVQHERPPRTAHTQINTSNNNNNLSPTMTPHTGDTTNLHH
NIMGAYPDPSFMANTGGQNNNAHQRNNNNFNSYNNNQNQQFHPNMYPPSH
PSNFSPPYTPDDENPDRKNGFLNITSLMQNNSNNNSTDLIDTLHNMPDDG
LDNINHESLIPNINEFPTQSIVNPEKIYESSVRILYASVSWARSIPTFIE
LPFTDQALLLEECWSELFILCMIQCSVPMDLSVLLSAAGAHAEKETSSNV
PGSVQDLGTLQHIVQRFQNLAIDATEFACLKATVLFKPDLPGIRNTQYVE
HLQDYAQSMLGEYVRTAHPNNPARFGKLLLLLPSLRSVTPKSIENLFFRS
GIDQLPIYKMLCNMFKAN
Run BLAST on NCBI

transcript from alignment at scaffold_167:1270071..1275264+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049956 ID=TCONS_00049956|Name=TCONS_00049956|organism=Clytia hemisphaerica|type=transcript|length=5194bp|location=Sequence derived from alignment at scaffold_167:1270071..1275264+ (Clytia hemisphaerica)
aaaaaaattagtgttataaaagaaagttgatattataaaaagaagttatt
attaaaaagccttttggcgcgccataaatttcatcataaatattcttata
aagtacatttttataaaaaagcgtgtatataaaGCCATGTGTCCACTCCG
GATAATTTTCAACGGATCGGTACGGTTCGGAACGGTTTCTATTGTTCTGG
GGATTATCTTCAACCCATTTGCTTCATATTTGTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTGGTCCA
AACGGATAGAaaaaaagttggattttttcaactttttttgcgaTCCGTGC
CGGATCGAAACGGTTCTATTGATTTCAAACAATAGAACATCTGTATAGAA
GATTACActaattaaattttctttgtataaatattgtaaacagaaagaat
CTGGTTCAGAAAGTTTGAAGTGGATATTGCAAAACGGTCCGGATCGGTTT
TCCAAAATATTCCGATCCAAACCGATCCGTTGAAAATTATCCGGAGTGGA
CACAAGGCTTAATAGAGCTGATTATCTTTGATAATTACTGTATTTCTTTA
ATTGGTCGAtcagaaaatttaacaaaaaagacaaaacagCAAAGAGACCC
CCACAAAATATTTGACcgatcaaatttttcagattttttgcctATTGTTA
AGCAAGGGATTTCTCATGAATGAAAATAGCTCATTGAATTTAAGCTCTCT
GGTTCAAATCGTTCAAAATAGAAGGCCcgttttctttcttctttcttctt
ccttttcttttcaCATTCAAATGACGTTCTTTCATTGACACGTGTCGAAA
GTTTAGAAAAGATGAgtataaaaataaattctctCACAAAATTCATTGGT
ACGTATaagaatatttgaatattttttgaggtTTGAGGGGCTGATGATTG
ATCGGtgaaattaaaatattcttataataaagACTCGAATGTGCAAAAAT
ATGCTTTTTATTTAGTAGAGTGTGCAAAGTGAGTGAGTCTTTTAAACAAA
AGGCTTTTGTTTGTAAttcgttttaaattttttgtaagCATGCAACGTTA
ATTTTCTTAAACTACGGttcattttacaagcaaaatcTTTCAAGGAAAGA
TTTTACAGAAACTTTCAACTTTTAACcaataaaattaaaatgtcATCGGG
ACTTATCCAATTTTCATTAAAACGTTGATAGGAGATCGATTTCAGACATa
ttaaatcaaatttaattcCAACTCACTTTTCTTATAATTAAAGAGAGTAA
TATTTATAATTAAACTCTCACGGAAAGCTATCATGCTTAAAGTGTGATTG
TTCTACTTTAGGCAATAGATGGATGTTAATTGTACGTCTCAGTGCGCAAG
CGTGTTGAAAGTTTGCAGAAAAAACTTTGCCAACTTGTTTTCTGTATGTT
TACCTGCCAAACAAAACAGGTCGAAAATAAACCGTCTTTTATTAAATCTA
GCCAATCAGATTAAAGAATCTTCTATAAGAAAAGGAAATAAGCCAATCAG
ATGGCAGCTGCGTGAATAAAAAAAGCGGGAATATTTTCGATTGAGCAAAA
GACTTATGAAGAAATTGTGATTCAAAGAAGAACGAGATAGAAAGAGCAAA
GAGTAAAGagttaaaaaatcaaagattaaatattttttttctgttcaGCT
ATGGAGTATAAGAGGCAGAGAACTATGGCTACTCGGATTCTTGAACCAAA
TGGCATAACAACtataaaacaagaaaaattataCGAAAAAGGTTTGTggg
gtgaaaaaaaaattttgataaattattcAAATAATACTTGATCACTTTGA
TAAatattgatatatttttttctttgatgtaTTATTTATTTATGCCGCCC
CTTTCAAAGTCTTTAAAGATGTTTGTTTGCTCAAGCCTCTTTAAAGTTTT
AAACCCAGAACCAAAAAAGCTTTTAACGAACAACTTTCCATCTTTTGATG
CACAGGTTTAAGCAAGAAGCCAGTTCATTTTTTAGATAGTTCCATAACAA
ATCATTTTCTGAAAGCATaataaaattctttctttttacaGAAATACTAA
CCGACAAGAAACCTCTCTCGTTATGCCGAGTTTGCGGCGACAAATCGTCG
GGCAAACATTATGGCGTCTATACGTGCGACGGTTGTCGTGGTTTTTTCAA
ACGTGCCGTACGACGAAATTTGGACTTCCGTTGCAAAGAGAAAGGACAGT
GTCAGGTTGATGTGGCAAGACGGAATCAGTGTCAAGCATGCAGGTGGAAG
AAATGTTTAGAAGTCAAAATGAACAGAGATGGTAAGAtgtctttcaaaaa
aattattaaattcttaacattttagccaccgaagccttatattcttatat
agtttgttcttataaaaaaacgtgtatgaagTCTTTGAGCTCCTGGGATG
TTCTCCAGatgttttaaaattgttcttaattttgtcattttcaattttct
ggGTATACAGTATTTTTATGCAATTTCCCAAGGAATTGGGTACGTTTTAG
AATCCACGTACTTAATATGTTTAaaactttttcttaatattctggcttgt
cttatgttcttataaaaaacgtgtaatatatGACACTTTTGTTATACCCG
GGCGATATCTCATCCTCTAAACACGAAGATTTCTTGAACGTcgacgtgtt
tttttttttgttaggaCAATATTactgcttcttttgaaaacacagtttaa
atacacatttttttaaaagaaaaaactatgtaagaacataaggcttccaa
AGGcctcaaaaactttggatgttcttataaaaaaaacacgtgtACAACAT
CCAGCTTCAGATTGTACTAAGATTGTAATTAAAAACAGGGCAGAAtatat
ttcaaagttttaatcCCAAATGATGAATaagaatgaaattttgtttggtG
GTAGCTtttcagaaataaaaattaacGTAAATCTTTTCATTTCAGCTGTT
CAACACGAACGCCCGCCACGCACCGCCCATACTCAAATCAACACatccaa
caacaacaataacTTGAGTCCAACTATGACTCCCCATACAGGTGATACCA
CCAATCTTCATCACAACATTATGGGAGCATATCCAGACCCAAGTTTTATG
GCTAACACGGGCGGTCAAAATAATAACGCCCATCAAAGAAACAACAACAA
TTTCAATAGTTATAATAATAATCAGAATCAACAATTCCACCCTAACATGT
ATCCACCCTCACACCCTAGCAATTTCTCACCACCTTATACTCCAGACGAT
GAAAACCCAGACCGGAAAAATGGATTCTTAAACATTACGTCACTAATGCA
AAACAATAGCAATAACAATAGCACAGATTTGATTGACACTCTTCACAATA
TGCCAGATGATGGTCTGGATAATATCAACCATGAATCATTGATTCCAAAC
ATCAACGAATTTCCAACACAAAGTATTGTAAATCCTGAAAAAATCTACGA
GTCTTCAGTCCGTATTTTATACGCATCAGTCAGCTGGGCAAGAAGTATTC
CAACTTTTATAGAACTCCCTTTTACAGACCAAGCTTTATTATTAGAAGAA
TGTTGGAGTGAACTATTTATTCTTTGTATGATTCAATGCTCCGTACCAAT
GGATCTCAGCGTTCTTCTTTCCGCCGCGGGTGCACACGCGGAAAAGGAGA
CATCTTCAAACGTACCAGGAAGTGTTCAGGACTTAGGTACGCTACAACAC
ATTGTGCAACGATTCCAGAATCTGGCAATCGACGCAACAGAATTTGCATG
TCTCAAAGCTACAGTTCTTTTCAAACCTGGTAAGCTATTTGACAACACTT
TCATTTCGAACTCCAAAATAATCCCTTCCTGATAACAGATGTGTAGTTTT
CTTACGCGGCACGCTGAAAGCTCTGAAGATTGCTGAAAGCTAACCGTATA
TTTTATCCCAcgcctttagagcttcagcttCATGCACAATTTTTACCTGG
CTGAATTCTTTAACCCCTAGTACGGACCCATACTTGTTTCGTGTCTTGAA
GCCCATCCAATTTTTATCCTTCAATTTTTAAAGGTCTTACAATTATTCTT
CAAGCATAACAAAGATCAAGGCTATGTTGTCCATAACGAGAGCAATAATA
TAGAGAAAAATGATGACAAAATTGCTTTTTCTCCAACCGAGCGCCTAAGT
CTGATCTACACGTTCATTTTAgaccaaattcaactttttttttttttttt
ttttttttttttttttggaNNNNNNNNNNNNNNNNNAAGACATTACTGTC
TTTTCACCTAACCCCTTGAAgcgaagtttgtttatttacagACTAAGTAg
tgaaaaaaagtataaatgtaATATAGtttatataataataaagaGAGAAA
GAAGTAGAAGATAAAATTATTAACAAAGAGACACTTATTAGATGGCCCCA
TTTACACCAACCTATATTTGCTTCAACTTTCGTTTAAGATCTTCCCGGGA
TACGTAACACACAATACGTTGAACATTTACAAGACTACGCGCAAAGCATG
TTGGGTGAATATGTACGAACTGCTCATCCCAACAATCCTGCACGGTTTGG
AAAATTGTTGTTGCTGTTGCCATCGTTACGCTCCGTTACACCCAAATCGA
TTGAGAACTTGTTTTTCCGTAGTGGTATTGATCAACTCCCTATCTATAAA
ATGCTGTGCAACATGTTCAAAGCGAATTGaattaaaatcaaatgttttga
aGTTGAAATGAATCAGTTGGATTTATGCCGTGAAAGAGCTTTACATCCAA
CTCTGTCTTACAGCAAAGAATATGCTGAATTCGAGAATTTCAAACGTAAT
GAGAAATTCTCACTCCGAGGGGACAAATAAAAAGCAAAATCTAGCaaatt
tttctatcttttttttttaaacaattagatcatttttcattcttttataA
ACTCATATAAAtccgaatttttttttacgGACAGTCATTTTTCGTTGTCT
TTTTTTCATGTAAATATCTTTTCTATATTTCACAAAACTGATAGAGCATT
TTTATCGTAATTGATTTTAAAGTATAATACAGGTCTaaatttat

Coding sequence (CDS) from alignment at scaffold_167:1270071..1275264+

>TCONS_00049956 ID=TCONS_00049956|Name=TCONS_00049956|organism=Clytia hemisphaerica|type=CDS|length=5628bp|location=Sequence derived from alignment at scaffold_167:1270071..1275264+ (Clytia hemisphaerica)
ATGGAGTATAAGAGGCAGAGAACTATGGCTACTCGGATTCTTGAACCAAA
TGGCATAACAACtataaaacaagaaaaattataCGAAAAAGAAATACTAA
CCGACAAGAAACCTCTCTCGTTATGCCGAGTTTGCGGCGACAAATCGTCG
GGCAAACATTATGGCGTCTATACGTGCGACGGTTGTCGTGGTTTTTTCAA
ACGTGCCGTACGACGAAATTTGGACTTCCGTTGCAAAGAGAAAGGACAGT
GTCAGGTTGATGTGGCAAGACGGAATCAGTGTCAAGCATGCAGGTGGAAG
AAATGTTTAGAAGTCAAAATGAACAGAGATGCTGTTCAACACGAACGCCC
GCCACGCACCGCCCATACTCAAATCAACACatccaacaacaacaataacT
TGAGTCCAACTATGACTCCCCATACAGGTGATACCACCAATCTTCATCAC
AACATTATGGGAGCATATCCAGACCCAAGTTTTATGGCTAACACGGGCGG
TCAAAATAATAACGCCCATCAAAGAAACAACAACAATTTCAATAGTTATA
ATAATAATCAGAATCAACAATTCCACCCTAACATGTATCCACCCTCACAC
CCTAGCAATTTCTCACCACCTTATACTCCAGACGATGAAAACCCAGACCG
GAAAAATGGATTCTTAAACATTACGTCACTAATGCAAAACAATAGCAATA
ACAATAGCACAGATTTGATTGACACTCTTCACAATATGCCAGATGATGGT
CTGGATAATATCAACCATGAATCATTGATTCCAAACATCAACGAATTTCC
AACACAAAGTATTGTAAATCCTGAAAAAATCTACGAGTCTTCAGTCCGTA
TTTTATACGCATCAGTCAGCTGGGCAAGAAGTATTCCAACTTTTATAGAA
CTCCCTTTTACAGACCAAGCTTTATTATTAGAAGAATGTTGGAGTGAACT
ATTTATTCTTTGTATGATTCAATGCTCCGTACCAATGGATCTCAGCGTTC
TTCTTTCCGCCGCGGGTGCACACGCGGAAAAGGAGACATCTTCAAACGTA
CCAGGAAGTGTTCAGGACTTAGGTACGCTACAACACATTGTGCAACGATT
CCAGAATCTGGCAATCGACGCAACAGAATTTGCATGTCTCAAAGCTACAG
TTCTTTTCAAACCTGATCTTCCCGGGATACGTAACACACAATACGTTGAA
CATTTACAAGACTACGCGCAAAGCATGTTGGGTGAATATGTACGAACTGC
TCATCCCAACAATCCTGCACGGTTTGGAAAATTGTTGTTGCTGTTGCCAT
CGTTACGCTCCGTTACACCCAAATCGATTGAGAACTTGTTTTTCCGTAGT
GGTATTGATCAACTCCCTATCTATAAAATGCTGTGCAACATGTTCAAAGC
GAATTGaATGGAGTATAAGAGGCAGAGAACTATGGCTACTCGGATTCTTG
AACCAAATGGCATAACAACtataaaacaagaaaaattataCGAAAAAGAA
ATACTAACCGACAAGAAACCTCTCTCGTTATGCCGAGTTTGCGGCGACAA
ATCGTCGGGCAAACATTATGGCGTCTATACGTGCGACGGTTGTCGTGGTT
TTTTCAAACGTGCCGTACGACGAAATTTGGACTTCCGTTGCAAAGAGAAA
GGACAGTGTCAGGTTGATGTGGCAAGACGGAATCAGTGTCAAGCATGCAG
GTGGAAGAAATGTTTAGAAGTCAAAATGAACAGAGATGCTGTTCAACACG
AACGCCCGCCACGCACCGCCCATACTCAAATCAACACatccaacaacaac
aataacTTGAGTCCAACTATGACTCCCCATACAGGTGATACCACCAATCT
TCATCACAACATTATGGGAGCATATCCAGACCCAAGTTTTATGGCTAACA
CGGGCGGTCAAAATAATAACGCCCATCAAAGAAACAACAACAATTTCAAT
AGTTATAATAATAATCAGAATCAACAATTCCACCCTAACATGTATCCACC
CTCACACCCTAGCAATTTCTCACCACCTTATACTCCAGACGATGAAAACC
CAGACCGGAAAAATGGATTCTTAAACATTACGTCACTAATGCAAAACAAT
AGCAATAACAATAGCACAGATTTGATTGACACTCTTCACAATATGCCAGA
TGATGGTCTGGATAATATCAACCATGAATCATTGATTCCAAACATCAACG
AATTTCCAACACAAAGTATTGTAAATCCTGAAAAAATCTACGAGTCTTCA
GTCCGTATTTTATACGCATCAGTCAGCTGGGCAAGAAGTATTCCAACTTT
TATAGAACTCCCTTTTACAGACCAAGCTTTATTATTAGAAGAATGTTGGA
GTGAACTATTTATTCTTTGTATGATTCAATGCTCCGTACCAATGGATCTC
AGCGTTCTTCTTTCCGCCGCGGGTGCACACGCGGAAAAGGAGACATCTTC
AAACGTACCAGGAAGTGTTCAGGACTTAGGTACGCTACAACACATTGTGC
AACGATTCCAGAATCTGGCAATCGACGCAACAGAATTTGCATGTCTCAAA
GCTACAGTTCTTTTCAAACCTGATCTTCCCGGGATACGTAACACACAATA
CGTTGAACATTTACAAGACTACGCGCAAAGCATGTTGGGTGAATATGTAC
GAACTGCTCATCCCAACAATCCTGCACGGTTTGGAAAATTGTTGTTGCTG
TTGCCATCGTTACGCTCCGTTACACCCAAATCGATTGAGAACTTGTTTTT
CCGTAGTGGTATTGATCAACTCCCTATCTATAAAATGCTGTGCAACATGT
TCAAAGCGAATTGaATGGAGTATAAGAGGCAGAGAACTATGGCTACTCGG
ATTCTTGAACCAAATGGCATAACAACtataaaacaagaaaaattataCGA
AAAAGAAATACTAACCGACAAGAAACCTCTCTCGTTATGCCGAGTTTGCG
GCGACAAATCGTCGGGCAAACATTATGGCGTCTATACGTGCGACGGTTGT
CGTGGTTTTTTCAAACGTGCCGTACGACGAAATTTGGACTTCCGTTGCAA
AGAGAAAGGACAGTGTCAGGTTGATGTGGCAAGACGGAATCAGTGTCAAG
CATGCAGGTGGAAGAAATGTTTAGAAGTCAAAATGAACAGAGATGCTGTT
CAACACGAACGCCCGCCACGCACCGCCCATACTCAAATCAACACatccaa
caacaacaataacTTGAGTCCAACTATGACTCCCCATACAGGTGATACCA
CCAATCTTCATCACAACATTATGGGAGCATATCCAGACCCAAGTTTTATG
GCTAACACGGGCGGTCAAAATAATAACGCCCATCAAAGAAACAACAACAA
TTTCAATAGTTATAATAATAATCAGAATCAACAATTCCACCCTAACATGT
ATCCACCCTCACACCCTAGCAATTTCTCACCACCTTATACTCCAGACGAT
GAAAACCCAGACCGGAAAAATGGATTCTTAAACATTACGTCACTAATGCA
AAACAATAGCAATAACAATAGCACAGATTTGATTGACACTCTTCACAATA
TGCCAGATGATGGTCTGGATAATATCAACCATGAATCATTGATTCCAAAC
ATCAACGAATTTCCAACACAAAGTATTGTAAATCCTGAAAAAATCTACGA
GTCTTCAGTCCGTATTTTATACGCATCAGTCAGCTGGGCAAGAAGTATTC
CAACTTTTATAGAACTCCCTTTTACAGACCAAGCTTTATTATTAGAAGAA
TGTTGGAGTGAACTATTTATTCTTTGTATGATTCAATGCTCCGTACCAAT
GGATCTCAGCGTTCTTCTTTCCGCCGCGGGTGCACACGCGGAAAAGGAGA
CATCTTCAAACGTACCAGGAAGTGTTCAGGACTTAGGTACGCTACAACAC
ATTGTGCAACGATTCCAGAATCTGGCAATCGACGCAACAGAATTTGCATG
TCTCAAAGCTACAGTTCTTTTCAAACCTGATCTTCCCGGGATACGTAACA
CACAATACGTTGAACATTTACAAGACTACGCGCAAAGCATGTTGGGTGAA
TATGTACGAACTGCTCATCCCAACAATCCTGCACGGTTTGGAAAATTGTT
GTTGCTGTTGCCATCGTTACGCTCCGTTACACCCAAATCGATTGAGAACT
TGTTTTTCCGTAGTGGTATTGATCAACTCCCTATCTATAAAATGCTGTGC
AACATGTTCAAAGCGAATTGaATGGAGTATAAGAGGCAGAGAACTATGGC
TACTCGGATTCTTGAACCAAATGGCATAACAACtataaaacaagaaaaat
tataCGAAAAAGAAATACTAACCGACAAGAAACCTCTCTCGTTATGCCGA
GTTTGCGGCGACAAATCGTCGGGCAAACATTATGGCGTCTATACGTGCGA
CGGTTGTCGTGGTTTTTTCAAACGTGCCGTACGACGAAATTTGGACTTCC
GTTGCAAAGAGAAAGGACAGTGTCAGGTTGATGTGGCAAGACGGAATCAG
TGTCAAGCATGCAGGTGGAAGAAATGTTTAGAAGTCAAAATGAACAGAGA
TGCTGTTCAACACGAACGCCCGCCACGCACCGCCCATACTCAAATCAACA
CatccaacaacaacaataacTTGAGTCCAACTATGACTCCCCATACAGGT
GATACCACCAATCTTCATCACAACATTATGGGAGCATATCCAGACCCAAG
TTTTATGGCTAACACGGGCGGTCAAAATAATAACGCCCATCAAAGAAACA
ACAACAATTTCAATAGTTATAATAATAATCAGAATCAACAATTCCACCCT
AACATGTATCCACCCTCACACCCTAGCAATTTCTCACCACCTTATACTCC
AGACGATGAAAACCCAGACCGGAAAAATGGATTCTTAAACATTACGTCAC
TAATGCAAAACAATAGCAATAACAATAGCACAGATTTGATTGACACTCTT
CACAATATGCCAGATGATGGTCTGGATAATATCAACCATGAATCATTGAT
TCCAAACATCAACGAATTTCCAACACAAAGTATTGTAAATCCTGAAAAAA
TCTACGAGTCTTCAGTCCGTATTTTATACGCATCAGTCAGCTGGGCAAGA
AGTATTCCAACTTTTATAGAACTCCCTTTTACAGACCAAGCTTTATTATT
AGAAGAATGTTGGAGTGAACTATTTATTCTTTGTATGATTCAATGCTCCG
TACCAATGGATCTCAGCGTTCTTCTTTCCGCCGCGGGTGCACACGCGGAA
AAGGAGACATCTTCAAACGTACCAGGAAGTGTTCAGGACTTAGGTACGCT
ACAACACATTGTGCAACGATTCCAGAATCTGGCAATCGACGCAACAGAAT
TTGCATGTCTCAAAGCTACAGTTCTTTTCAAACCTGATCTTCCCGGGATA
CGTAACACACAATACGTTGAACATTTACAAGACTACGCGCAAAGCATGTT
GGGTGAATATGTACGAACTGCTCATCCCAACAATCCTGCACGGTTTGGAA
AATTGTTGTTGCTGTTGCCATCGTTACGCTCCGTTACACCCAAATCGATT
GAGAACTTGTTTTTCCGTAGTGGTATTGATCAACTCCCTATCTATAAAAT
GCTGTGCAACATGTTCAAAGCGAATTGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031658XLOC_031658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049956-exon-scaffold_167-1491911889:1270071..1270114TCONS_00049956-exon-scaffold_167-1491911889:1270071..1270114Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1510915933:1270071..1270114TCONS_00049956-exon-scaffold_167-1510915933:1270071..1270114Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1575043694:1270071..1270114TCONS_00049956-exon-scaffold_167-1575043694:1270071..1270114Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1491911889:1271869..1271961TCONS_00049956-exon-scaffold_167-1491911889:1271869..1271961Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1510915933:1271869..1271961TCONS_00049956-exon-scaffold_167-1510915933:1271869..1271961Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1575043694:1271869..1271961TCONS_00049956-exon-scaffold_167-1575043694:1271869..1271961Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1491911889:1272262..1272501TCONS_00049956-exon-scaffold_167-1491911889:1272262..1272501Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1510915933:1272262..1272501TCONS_00049956-exon-scaffold_167-1510915933:1272262..1272501Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1575043694:1272262..1272501TCONS_00049956-exon-scaffold_167-1575043694:1272262..1272501Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1491911889:1273166..1273999TCONS_00049956-exon-scaffold_167-1491911889:1273166..1273999Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1510915933:1273166..1273999TCONS_00049956-exon-scaffold_167-1510915933:1273166..1273999Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1575043694:1273166..1273999TCONS_00049956-exon-scaffold_167-1575043694:1273166..1273999Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1491911889:1274659..1275264TCONS_00049956-exon-scaffold_167-1491911889:1274659..1275264Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1510915933:1274659..1275264TCONS_00049956-exon-scaffold_167-1510915933:1274659..1275264Clytia hemisphaericaexon
TCONS_00049956-exon-scaffold_167-1575043694:1274659..1275264TCONS_00049956-exon-scaffold_167-1575043694:1274659..1275264Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Nuclear receptorTCONS_00049956-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1270071..1275264 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.397139	0.408788	0.199849	0.0733205	22.3152	18.3156	23.9975	27.5914	14.4276	10.3172	15.066	11.9168	10.4036	9.50893	9.99755	23.1115	15.5525	14.6845	0.422167	0.147256	10.474	9.42694	4.88238	5.58874	5.18775	7.80114	1.75468	0.290583	0.17142	0.0748498
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00049956 vs. Swiss-Prot (Human)
Match: NR2E3 (Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.225e-52
Identity = 101/222 (45.50%), Postives = 141/222 (63.51%), Query Frame = 2 
Query:  785 PDDGLDNINHESLIPNINEFPTQSI--VNPEKIYESSVRILYASVSWARSIPTFIELPFTDQALLLEECWSELFILCMIQCSVPMDLSVLLSAAGAHAEKETSSNVPGSVQDLGTLQHIVQRFQNLAIDATEFACLKATVLFKPDLPGIRNTQYVEHLQDYAQSMLGEYVRTAHPNNPARFGKXXXXXPSLRSVTPKSIENLFFRSGIDQLPIYKMLCNMFK 1444
            P+D  +NI+  S  P     P  S      + I+E+S R+L+ +V WA+++P F  LPF DQ +LLEE WSELF+L  IQ S+P+D   LL+   A A       +  +  +   LQ  + RF+ LA+D TEFAC+KA VLFKP+  G+++ ++VE LQD +Q ML ++ +  HP+ P RFGKLLLLLPSLR +T + IE LFFR  I   P+ K+LC+MFK
Sbjct:  188 PEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFK 409

HSP 2 Score: 126.716 bits (317), Expect = 1.780e-31
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 2 
Query:  146 TDKKPLSLCRVCGDKSSGKHYGVYTCDGCRGFFKRAVRRNLDFRCK-EKGQCQVDVARRNQCQACRWKKCLEVKMNRDAVQHERPPR-TAHTQINT 427
            T   P   CRVCGD SSGKHYG+Y C+GC GFFKR+VRR L +RC+   G C VD A RNQCQACR KKCL+  MN+DAVQ+ER PR TA   +++
Sbjct:   39 TGVSPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVHLDS 134
The following BLAST results are available for this feature:
BLAST of TCONS_00049956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2E33.225e-5245.50Photoreceptor-specific nuclear receptor OS=Homo sa... [more]
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