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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053499 ID=TCONS_00053499|Name=TCONS_00053499|organism=Clytia hemisphaerica|type=transcript|length=3389bpRun BLAST on NCBI protein sequence of TCONS_00053499-protein >TCONS_00053499-protein ID=TCONS_00053499-protein|Name=TCONS_00053499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=808bp MVAVIHKPEQLILNLQTMALCEHRNVRINTTTITDAESIVMMEHPQQTPQRun BLAST on NCBI transcript from alignment at scaffold_232:7895..42036+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053499 ID=TCONS_00053499|Name=TCONS_00053499|organism=Clytia hemisphaerica|type=transcript|length=34142bp|location=Sequence derived from alignment at scaffold_232:7895..42036+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_232:7895..42036+ >TCONS_00053499 ID=TCONS_00053499|Name=TCONS_00053499|organism=Clytia hemisphaerica|type=CDS|length=24270bp|location=Sequence derived from alignment at scaffold_232:7895..42036+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053499 vs. Swiss-Prot (Human)
Match: CPEB1 (Cytoplasmic polyadenylation element-binding protein 1 OS=Homo sapiens GN=CPEB1 PE=1 SV=1) HSP 1 Score: 423.32 bits (1087), Expect = 2.871e-134 Identity = 199/292 (68.15%), Postives = 231/292 (79.11%), Query Frame = 3
Query: 1800 FEEGRDMSRRDNDIHDPTYTWSGHLPPKIYKNPIYSNKVFLGGVPWDITEAGLQQAFRPFGALSIEWPGKDGKHSRHPPKG-----YVYLLFESEKSVKNLLANCTHD-FSNGG--DWYYKISSRRMRCKEVQAIPWVLSDSNFVRTSSQRLDSSRTVFVGGLHGMINAEALCQIMNDLFDGVVYSGIDTDKHKYPIGSGRVTFNNNRSFMKAVQASFIEIRSPKFTKKVQIDPYLEDAMCSQCQFNPGPFFCRSVECFKYFCHSCWSWHHSIDNLRMHRPLTRHSKNSDSS 2651
E + R+ +++ T TWSG LPP+ YKNPIYS KVFLGGVPWDITEAGL FR FG+LS+EWPGKDGKH R PPKG YVYL+FE EKSV++LL C+HD S G ++Y+K+SSRRMRCKEVQ IPWVL+DSNFVR+ SQRLD SRTVFVG LHGM+NAEAL I+NDLF GVVY+GIDTDKHKYPIGSGRVTFNN RS++KAV A+F+EI++ KFTKKVQIDPYLED++C C PGPFFCR CFKYFC SCW W HS++ LR H PL R+ KN DSS
Sbjct: 275 IEREARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGNMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS 566 The following BLAST results are available for this feature:
BLAST of TCONS_00053499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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